BAC Information

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BAC

Clone NameB6Ng01-008E20
Chromosome19 (Build37)
Map Location 17,535,734 - 17,661,965
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008E20.bB6Ng01-008E20.g
ACCDH844603DH844604
length1,019979
definitionDH844603|Mus musculus domesticus DNA, BAC clone: B6Ng01-008E20, 5' end.DH844604|Mus musculus domesticus DNA, BAC clone: B6Ng01-008E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,535,734 - 17,536,765)(17,661,321 - 17,661,965)
sequence
gaattcaaatcgttttatcttccctacctagtaacgccttattttataaa
gacctgcctcatgccactcccccacattcaccaaactcgatggtccaggg
aggccaagcacttgcctgcttcttttattttctttccacaaattgtttta
aaattagccaactgtgaaagacggtgaggttggaccccagccaatgggga
gagatgcagtactcctgccttagcatagacacctatcagatttgctgctt
ggtgtgcttgttagatcagttttggtcatagcgcaccccttttgtgaaaa
agaaagccttggctgttttctttctctttgttcgtgtgttcccttgtata
gagagaatgttttgttttgttttgttttgttttttcaatctggatgcttc
caggtacctttgcaagttttctcgtggatgcagtcctggcacctctctgg
acagtgcttgcagactccttccacggccacgtgcttttcagggcaagttt
tccagcacaccccatggtctaggacgaagtctccttcacaagagttacag
ctggtggcatttccttcgcatgttttgcaaggggaactacagtgttcaca
aacaccatcttttgcataaaagcccctatggaaagaagggaaattgcaat
tatatcagctaccaacaaagagattgagaccaaaagaaatggttgctgtt
cttataatcaaaatgaaccttcaagactcactgagggaagattgtaaaaa
aatgtctagaaaaaatggaatgaaaggggtaggtatctcctagggaactg
ggattatttaaggcatttaatttgttaaaactttgtcctgatttatcccc
aattgtcattgtcctttctctctgttagatttatattttacagtagaaat
attttcacacacacactcacaacacacaaatagatatttcaaacaggtct
gactctggaacaactttggcatctactattaaagggtctggtactatgca
tctagaatcatcactaaga
gaattcaaaacacagtgacaagttgtatttttctaaatcaggtttctaac
attagtcctgaaggagaaggatgcagttcttgttgtttttctggaaatac
actttttctgcagagaagatctgcatagccactggtttacttggcaaaca
aaaagtgaactaggagagaagaatctaaccatgcaccttctaggtcttgt
atggcttgaatcacaaagcatgttggctttgtgtctggcttctttgtgtc
aagcggtgtttgagaaatttgtctgagcgtgtaccatactttttttatct
accagtttatggggtaaactgtaaagaggactcagaagttcagagcactt
gctctccaatcagaaagactagaattaggatcccagaaaccacacatcaa
gcctaatatcccagcaatgcctataaccccagctccaaagtatgtagaga
caggaggatcagtaggctttctgacttccagtgtagctgtaaaaaattca
agtgcaggcacaggagggtaccctgcttcaaaaggaataggcagagagta
atggaagctagcacaaacttctgccctccatgtacatgcactctcataca
aacatgcacacacacttacacagaccacaaatgaagaaataaatctgcca
attggtggtcattgaaattgacacactttttaaagaattttctaaaattt
ctgtatatgcatgtgttcctgtatgtatgagtttatgtgcgccacaggca
ggtagatgtctctagaagccagatgaggatctctgggaactaaagttaaa
agcatatggtgctagggacctaacctggctccagctgttttacaggtttt
tgacaattatgaatattcctatggagctctttctgtgggcttatgttttc
agttcagtttgataaatgtctagaaaaaaggtgttgaaatttaatgtata
gtgttcttgaactttattggaactctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17535734_17536765
seq2: B6Ng01-008E20.b_45_1063

seq1  GAATTCAAATCGTTTTATCTTCCCTACCTAGTAACGCCTTATTTTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCGTTTTATCTTCCCTACCTAGTAACGCCTTATTTTATAAA  50

seq1  GACCTGCCTCATGCCACTCCCCCACATTCACCAAACTCGATGGTCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCTCATGCCACTCCCCCACATTCACCAAACTCGATGGTCCAGGG  100

seq1  AGGCCAAGCACTTGCCTGCTTCTTTTATTTTCTTTCCACAAATTGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGCACTTGCCTGCTTCTTTTATTTTCTTTCCACAAATTGTTTTA  150

seq1  AAATTAGCCAACTGTGAAAGACGGTGAGGTTGGACCCCAGCCAATGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCCAACTGTGAAAGACGGTGAGGTTGGACCCCAGCCAATGGGGA  200

seq1  GAGATGCAGTACTCCTGCCTTAGCATAGACACCTATCAGATTTGCTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGTACTCCTGCCTTAGCATAGACACCTATCAGATTTGCTGCTT  250

seq1  GGTGTGCTTGTTAGATCAGTTTTGGTCATAGCGCACCCCTTTTGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTTGTTAGATCAGTTTTGGTCATAGCGCACCCCTTTTGTGAAAA  300

seq1  AGAAAGCCTTGGCTGTTTTCTTTCTCTTTGTTCGTGTGTTCCCTTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCTTGGCTGTTTTCTTTCTCTTTGTTCGTGTGTTCCCTTGTATA  350

seq1  GAGAGAATGTTTTGTTTTGTTTTGTTTTGTTTTTTCAATCTGGATGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATGTTTTGTTTTGTTTTGTTTTGTTTTTTCAATCTGGATGCTTC  400

seq1  CAGGTACCTTTGCAAGTTTTCTCGTGGATGCAGTCCTGGCACCTCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCTTTGCAAGTTTTCTCGTGGATGCAGTCCTGGCACCTCTCTGG  450

seq1  ACAGTGCTTGCAGACTCCTTCCACGGCCACGTGCTTTTCAGGGCAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTTGCAGACTCCTTCCACGGCCACGTGCTTTTCAGGGCAAGTTT  500

seq1  TCCAGCACACCCCATGGTCTAGGACGAAGTCTCCTTCACAAGAGTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACACCCCATGGTCTAGGACGAAGTCTCCTTCACAAGAGTTACAG  550

seq1  CTGGTGGCATTTCCTTCGCATGTTTTGCAAGGGGAACTACAGTGTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCATTTCCTTCGCATGTTTTGCAAGGGGAACTACAGTGTTCACA  600

seq1  AACACCATCTTTTGCATAAAAGCCCCTATGGAAAGAAGGGAAATTGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATCTTTTGCATAAAAGCCCCTATGGAAAGAAGGGAAATTGCAAT  650

seq1  TATATCAGCTACCAACAAAGAGATTGAGACCAAAAGAAATGGTTGCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGCTACCAACAAAGAGATTGAGACCAAAAGAAATGGTTGCTGTT  700

seq1  CTTATAATCAAAATGAACCTTCAAGACTCACTGAGGGAAGATTGTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATCAAAATGAACCTTCAAGACTCACTGAGGGAAGATTGTAAAAA  750

seq1  AATGTCTAGAAAAAATGGAATGAAAGGGGTAGGTATCTCCTAGGGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTAGAAAAAATGGAATGAAAGGGGTAGGTATCTCCTAGGGAACTG  800

seq1  GGATTATTTAAAGGCATTTAATTTGTTTAAAACTTTGTCCTGATTTATCC  850
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  GGATTATTT-AAGGCATTTAATTTG-TTAAAACTTTGTCCTGATTTATCC  848

seq1  CCAAATTGTCATTGTCCTTTCTCTCTGTTAGATTTATATTTTACAGTAAG  900
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CC-AATTGTCATTGTCCTTTCTCTCTGTTAGATTTATATTTTACAGT-AG  896

seq1  AAATATTTCAACACACACACTCACAAACACACAAATAGATATTTCAAAAC  950
      ||||||||  |||||||||||||| |||||||||||||||||||| ||||
seq2  AAATATTTTCACACACACACTCAC-AACACACAAATAGATATTTC-AAAC  944

seq1  AGGTCTGACTCTGGAAACAACTTTTGGCATCTACTATTTAAAGGGTCTGG  1000
      |||||||||||||| |||||| |||||||||||||| |||||||||||||
seq2  AGGTCTGACTCTGG-AACAAC-TTTGGCATCTACTA-TTAAAGGGTCTGG  991

seq1  TACTATGCAGTCTTAGGAATCAATCACTAAGA  1032
      ||||||||| |||   ||||| ||||||||||
seq2  TACTATGCA-TCT--AGAATC-ATCACTAAGA  1019

seq1: chr19_17661321_17661965
seq2: B6Ng01-008E20.g_68_712 (reverse)

seq1  GATTTATTTCTTCATTTGTGGTCTGTGTAAGTGTGTGTGCATGTTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTCTTCATTTGTGGTCTGTGTAAGTGTGTGTGCATGTTTGTAT  50

seq1  GAGAGTGCATGTACATGGAGGGCAGAAGTTTGTGCTAGCTTCCATTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCATGTACATGGAGGGCAGAAGTTTGTGCTAGCTTCCATTACTC  100

seq1  TCTGCCTATTCCTTTTGAAGCAGGGTACCCTCCTGTGCCTGCACTTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTATTCCTTTTGAAGCAGGGTACCCTCCTGTGCCTGCACTTGAAT  150

seq1  TTTTTACAGCTACACTGGAAGTCAGAAAGCCTACTGATCCTCCTGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAGCTACACTGGAAGTCAGAAAGCCTACTGATCCTCCTGTCTCT  200

seq1  ACATACTTTGGAGCTGGGGTTATAGGCATTGCTGGGATATTAGGCTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTTGGAGCTGGGGTTATAGGCATTGCTGGGATATTAGGCTTGAT  250

seq1  GTGTGGTTTCTGGGATCCTAATTCTAGTCTTTCTGATTGGAGAGCAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTTCTGGGATCCTAATTCTAGTCTTTCTGATTGGAGAGCAAGTG  300

seq1  CTCTGAACTTCTGAGTCCTCTTTACAGTTTACCCCATAAACTGGTAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACTTCTGAGTCCTCTTTACAGTTTACCCCATAAACTGGTAGATA  350

seq1  AAAAAAGTATGGTACACGCTCAGACAAATTTCTCAAACACCGCTTGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTATGGTACACGCTCAGACAAATTTCTCAAACACCGCTTGACAC  400

seq1  AAAGAAGCCAGACACAAAGCCAACATGCTTTGTGATTCAAGCCATACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCAGACACAAAGCCAACATGCTTTGTGATTCAAGCCATACAAG  450

seq1  ACCTAGAAGGTGCATGGTTAGATTCTTCTCTCCTAGTTCACTTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAGGTGCATGGTTAGATTCTTCTCTCCTAGTTCACTTTTTGTTT  500

seq1  GCCAAGTAAACCAGTGGCTATGCAGATCTTCTCTGCAGAAAAAGTGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTAAACCAGTGGCTATGCAGATCTTCTCTGCAGAAAAAGTGTATT  550

seq1  TCCAGAAAAACAACAAGAACTGCATCCTTCTCCTTCAGGACTAATGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAAACAACAAGAACTGCATCCTTCTCCTTCAGGACTAATGTTAG  600

seq1  AAACCTGATTTAGAAAAATACAACTTGTCACTGTGTTTTGAATTC  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGATTTAGAAAAATACAACTTGTCACTGTGTTTTGAATTC  645