BAC Information

Click to search

BAC

Clone NameB6Ng01-008F13
Chromosome19 (Build37)
Map Location 36,633,908 - 36,712,526
singlet/doubletdoublet
Overlap geneHectd2
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
Downstream geneLOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008F13.bB6Ng01-008F13.g
ACCDH844631DH844632
length5471,028
definitionDH844631|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F13, 5' end.DH844632|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,633,908 - 36,634,459)(36,711,968 - 36,712,526)
sequence
ctcgaatagaggaacaacataatgaagttgttggtagtgtgtagttaaac
tggaggaagtaggaggaagaaagtgaaggaaggagggttgtggttcatgc
ttgagatggtgagcacacccactggagtgttgaccacaggattaactgta
cagagtagaagaacccacacagtgtggaacctcggcgacagtaatgaaag
atagaaggattaatacaggggaaaaaagacagttccagaaagagtttctc
aggaggaagaagaagaggaagaagagaaggaagaggatggaaggaaaaag
aaggcagaaaaaggaggaagaggaggaagaggaggaagaagaggaagagg
aagcatattaaaataaaacaatccagccagtaacattttaaaaaaatgtt
gtgtgtgtgtgtgtttacctaaactctgcacagcttagcattttgaacag
tcttatatatgtaaccttttgtgcattttgtctatcatattctaaatgag
gtgatgtagggagagaatgaaaaaattaatagtgaatgtatcttaca
gaattcacatctggttctgcaagcctgctcaaaggcctctggttggggaa
aagcttggaagttgtattgctaaacggacatgatatgcttgtcaagttgt
cttctgagcatttatattgatgcccagagattagcgctgctgtctggttt
gattagtgtagtggttattcctggttgtcaacttgactaatacaattagc
aaatgttaatacagactcacaactcacctaagtcctgagaataagaggct
ggtcagtgctcagccctagcagaggcatctatgtcacccctctgaggctc
agggaacagcaaagaagaaggcacagaaagaatataaagtccaaaggaga
cagaatgcagtgaaagtcagacacgtggttgcactcttgacctttcaaca
caccatgactaactacgcaggattgactctgtctgtgtgggtgtggcgtc
ccatgcccttgcccttagcacctcagaggcatgtgcaggcagatctctga
gtttgaggctaccctggtctcgataatgaatttcaggtcatccatgactg
catatcgagatcctgtctcaaccaatcaattcagtgggtcaatgattaaa
cctatcggcattctgacttgaatgggggaagggcttgtaggccccactcc
tcctgaggagctgtaggtatttaataattgctggtatccgggagggtgcg
gccattttcttcagtggtctgggaaagtcgccccatgctccagcagatag
tctctcccccatgtttctgtaacaaaccttgattaagtttaccaggacac
cagaaccaaaccaaagcaagacacgaaagtctgtagaagtggagtagtta
ggaaggcgatcagagggagtcagaggggacaagagagggtatagagcatg
aatttgatcaaaatacatgaaaatacatggaatgaacacgctatggtgaa
cccatgcttacataaaagggtaaaattttcaatagagaaggaaaaagaaa
tccagtcttgagtccggggggtggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36633908_36634459
seq2: B6Ng01-008F13.b_47_599

seq1  GAATTCCTCGAATAGAGGAACAACATAATGAAGTTGTTGGTAGTGTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGAATAGAGGAACAACATAATGAAGTTGTTGGTAGTGTGTAG  50

seq1  TTAAACTGGAGGAAGTAGGAGGAAGAAAGTGAAGGAAGGAGGGTTGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGGAGGAAGTAGGAGGAAGAAAGTGAAGGAAGGAGGGTTGTGGT  100

seq1  TCATGCTTGAGATGGTGAGCACACCCACTGGAGTGTTGACCACAGGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTGAGATGGTGAGCACACCCACTGGAGTGTTGACCACAGGATTA  150

seq1  ACTGTACAGAGTAGAAGAACCCACACAGTGTGGAACCTCGGCGACAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACAGAGTAGAAGAACCCACACAGTGTGGAACCTCGGCGACAGTAA  200

seq1  TGAAAGATAGAAGGATTAATACAGGGGAAAAAAGACAGTTCCAGAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATAGAAGGATTAATACAGGGGAAAAAAGACAGTTCCAGAAAGAG  250

seq1  TTTCTCAGGAGGAAGAAGAAGAGGAAGAAGAGAAGGAAGAGGATGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGAGGAAGAAGAAGAGGAAGAAGAGAAGGAAGAGGATGGAAGG  300

seq1  AAAAAGAAGGCAGAAAAAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGCAGAAAAAGGAGGAAGAGGAGGAAGAGGAGGAAGAAGAGG  350

seq1  AAGAGGAAGCATATTAAAATAAAACAATCCAGCCAGTAACATTTTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGCATATTAAAATAAAACAATCCAGCCAGTAACATTTTAAAAA  400

seq1  AATGTTGTGTGTGTGTGTGTTTACCTAAACTCTGCACAGCTTAGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTGTGTGTGTGTGTTTACCTAAACTCTGCACAGCTTAGCATTTT  450

seq1  GAACAGTCTTATATATGTAACCTTTTGTGCATTTTGTCTATCATATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCTTATATATGTAACCTTTTGTGCATTTTGTCTATCATATTCTA  500

seq1  AATGAGGTGATGTAGGGAGAGAATGAAAAAA-TAATAGTGAATGTATCTT  549
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATGAGGTGATGTAGGGAGAGAATGAAAAAATTAATAGTGAATGTATCTT  550

seq1  ACA  552
      |||
seq2  ACA  553

seq1: chr19_36711968_36712526
seq2: B6Ng01-008F13.g_539_1093 (reverse)

seq1  ACCTCCACCCCCAGAACCTCAAGACCTGATTTCTTTTTCCTTCTCTATTT  50
      |||||||||||| | | ||||||||  |||||||||||||||||||| ||
seq2  ACCTCCACCCCCCGGA-CTCAAGACTGGATTTCTTTTTCCTTCTCTA-TT  48

seq1  GAAAATTTTACCCTTTTATTGTTAAGCATGGGTTTCACCATAGCGTGTTC  100
      |||||||||||||||||||   |||||||||| |||||||||||||||||
seq2  GAAAATTTTACCCTTTTAT--GTAAGCATGGG-TTCACCATAGCGTGTTC  95

seq1  A-TCCATGTA-TATAATGTATTTTGATCAAATTCATGCTCTATTACCCTC  148
      | |||||||| | | ||||||||||||||||||||||||||| |||||||
seq2  ATTCCATGTATTTTCATGTATTTTGATCAAATTCATGCTCTA-TACCCTC  144

seq1  TCTTGTCCCCTCTGACTCCCTCTGATCGCCTTCCTAACTACTCCACTTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCCCTCTGACTCCCTCTGATCGCCTTCCTAACTACTCCACTTCT  194

seq1  ACAGACTTTCGTGTCTTGCTTTGGTTTGGTTCTGGTGTCCTGGTAAACTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTTCGTGTCTTGCTTTGGTTTGGTTCTGGTGTCCTGGTAAACTT  244

seq1  AATCAAGGTTTGTTACAGAAACATGGGGGAGAGACTATCTGCTGGAGCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGTTTGTTACAGAAACATGGGGGAGAGACTATCTGCTGGAGCAT  294

seq1  GGGGCGACTTTCCCAGACCACTGAAGAAAATGGCCGCACCCTCCCGGATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGACTTTCCCAGACCACTGAAGAAAATGGCCGCACCCTCCCGGATA  344

seq1  CCAGCAATTATTAAATACCTACAGCTCCTCAGGAGGAGTGGGGCCTACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATTATTAAATACCTACAGCTCCTCAGGAGGAGTGGGGCCTACAA  394

seq1  GCCCTTCCCCCATTCAAGTCAGAATGCCGATAGGTTTAATCATTGACCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCCCCATTCAAGTCAGAATGCCGATAGGTTTAATCATTGACCCA  444

seq1  CTGAATTGATTGGTTGAGACAGGATCTCGATATGCAGTCATGGATGACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGATTGGTTGAGACAGGATCTCGATATGCAGTCATGGATGACCT  494

seq1  GAAATTCATTATCGAGACCAGGGTAGCCTCAAACTCAGAGATCTGCCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATTATCGAGACCAGGGTAGCCTCAAACTCAGAGATCTGCCTGC  544

seq1  ACATGCCTCTG  559
      |||||||||||
seq2  ACATGCCTCTG  555