BAC Information

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BAC

Clone NameB6Ng01-008G03
Chromosome19 (Build37)
Map Location 6,098,481 - 6,193,354
singlet/doubletdoublet
Overlap geneNaaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2
Upstream geneRab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550
Downstream geneLOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008G03.bB6Ng01-008G03.g
ACCDH844659DH844660
length927820
definitionDH844659|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G03, 5' end.DH844660|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,192,426 - 6,193,354)(6,098,481 - 6,099,300)
sequence
gaattcttcattatgccagcttttgttgtgaaaacctagctccttattta
aaactattggttgattaaagaggcctgcagcctgtagctgggcagaagag
aggttggcagggcttcagtgcctgggcttggtgtctagggcagggaccac
agaggaaagtggaggaagaaggaaggtaccatggggtaggtggatcctga
gggcatgaccatgagagccagcctgttggcagaacatgacaaataatgtc
agggttactgacaggaaagtagacaaaatagcacagagggttgatatctg
cccagctctaattctttaaggcttattataaatataaaggttttgtgttt
tttatttgggaactaaatcatctaaggtggggtagaaacccccaaacaat
atttactgaaacaagcttgtgactagctaacaaccacttttgctaccccc
tattctgtgtcacttgcagcttatgcaccaggcagcataaacttgacaga
agaggaagctgaagcacttctgaaggagtgtatgtccatcaactactttg
ttagcctaacttcttcaagttatagagaggaagaaaccaagattataaac
ataagatcacactactgagtccatatgcatatgcatatgcatcccaacaa
agccttgagctcactaatgtggctactgtggcccagacctgcgtctcatt
cacaacaaccttcctgcctcagtctcccagagttctggtattgcatgcat
acactgtcacattctgtactcattccatcattttttcctctgtattatct
tacaccctttctgttcagcagagaaaaatctgtggcagcattataaaaga
tatgtgcagagcaaagggggtggggcggcagagtgagtggggctggagtg
agcagaggtcctgagtcaattccaaca
gaattcccaagggtttagagaatgcatttagatttgggctgtgactgctt
tcagtgtgtgcccagcctgggagcctcactaggctccacaattcctaaag
tgagagacaaagtgtctgtctgaagacctaccttctttctttctttttgt
ttgtttgtttgtttgtttgtttgtttgtttttcgagacagggtttctctg
tgtagccctggctgtcctggaactcactttgtagaccaggctggcctcga
actcagaaatccacctgcctctgcctcccaagtactgggactaaaggtgt
gcatcacaacgcccggctcggaagtcctaccttctaaagcctggggagat
gactcaagtaatgaagcgcttgtcactcaaactgaagtacctgagctgga
atctccaaaatccacataacagtgggatgcatagcatgaggaggggtcgt
tatcccagcactcccgaggagagatgagaggtagagacaagaatcctaga
atcccttaggtcagctagcctgccgggcccatgcagtgtggaaatagcaa
agatacctggagtgagaatttttggatttggtttctttaaaaaacataga
aatattgtaagagtatgttttcattttaacccaaggtgtcgatatggggc
tgcttcagtccacagcagctgcgatttgcctcatgctctagcaggggcat
gaatttgccagctgcagactagtttctgcaattgtgtgatggcatttgga
tttctgggaacttttctgaggatatacaagtcttagggctgctgagagta
gtgtggttgggtggttggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6192426_6193354
seq2: B6Ng01-008G03.b_46_972 (reverse)

seq1  TGTTGGGAATTGAACTCAGGACCTCTGCTCACTCCAGCCCCACTCACTCT  50
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTT-GGAATTG-ACTCAGGACCTCTGCTCACTCCAGCCCCACTCACTCT  48

seq1  GCCGCCCCACCCCCCTTGCTCTGCACATATCTTTTATAATGCTGCCACAG  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCGCCCCACCCCCTTTGCTCTGCACATATCTTTTATAATGCTGCCACAG  98

seq1  ATTTTTCTCTGCTGAACAGAAAGGGTGTAAGATAATACAGAGGAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCTGCTGAACAGAAAGGGTGTAAGATAATACAGAGGAAAAAAT  148

seq1  GATGGAATGAGTACAGAATGTGACAGTGTATGCATGCAATACCAGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATGAGTACAGAATGTGACAGTGTATGCATGCAATACCAGAACTC  198

seq1  TGGGAGACTGAGGCAGGAAGGTTGTTGTGAATGAGACGCAGGTCTGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACTGAGGCAGGAAGGTTGTTGTGAATGAGACGCAGGTCTGGGCC  248

seq1  ACAGTAGCCACATTAGTGAGCTCAAGGCTTTGTTGGGATGCATATGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCCACATTAGTGAGCTCAAGGCTTTGTTGGGATGCATATGCATA  298

seq1  TGCATATGGACTCAGTAGTGTGATCTTATGTTTATAATCTTGGTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGGACTCAGTAGTGTGATCTTATGTTTATAATCTTGGTTTCTTC  348

seq1  CTCTCTATAACTTGAAGAAGTTAGGCTAACAAAGTAGTTGATGGACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATAACTTGAAGAAGTTAGGCTAACAAAGTAGTTGATGGACATAC  398

seq1  ACTCCTTCAGAAGTGCTTCAGCTTCCTCTTCTGTCAAGTTTATGCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCAGAAGTGCTTCAGCTTCCTCTTCTGTCAAGTTTATGCTGCCT  448

seq1  GGTGCATAAGCTGCAAGTGACACAGAATAGGGGGTAGCAAAAGTGGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATAAGCTGCAAGTGACACAGAATAGGGGGTAGCAAAAGTGGTTGT  498

seq1  TAGCTAGTCACAAGCTTGTTTCAGTAAATATTGTTTGGGGGTTTCTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTCACAAGCTTGTTTCAGTAAATATTGTTTGGGGGTTTCTACCC  548

seq1  CACCTTAGATGATTTAGTTCCCAAATAAAAAACACAAAACCTTTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAGATGATTTAGTTCCCAAATAAAAAACACAAAACCTTTATATTT  598

seq1  ATAATAAGCCTTAAAGAATTAGAGCTGGGCAGATATCAACCCTCTGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGCCTTAAAGAATTAGAGCTGGGCAGATATCAACCCTCTGTGCT  648

seq1  ATTTTGTCTACTTTCCTGTCAGTAACCCTGACATTATTTGTCATGTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTACTTTCCTGTCAGTAACCCTGACATTATTTGTCATGTTCTG  698

seq1  CCAACAGGCTGGCTCTCATGGTCATGCCCTCAGGATCCACCTACCCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGCTGGCTCTCATGGTCATGCCCTCAGGATCCACCTACCCCATG  748

seq1  GTACCTTCCTTCTTCCTCCACTTTCCTCTGTGGTCCCTGCCCTAGACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCCTTCTTCCTCCACTTTCCTCTGTGGTCCCTGCCCTAGACACC  798

seq1  AAGCCCAGGCACTGAAGCCCTGCCAACCTCTCTTCTGCCCAGCTACAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGGCACTGAAGCCCTGCCAACCTCTCTTCTGCCCAGCTACAGGC  848

seq1  TGCAGGCCTCTTTAATCAACCAATAGTTTTAAATAAGGAGCTAGGTTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCCTCTTTAATCAACCAATAGTTTTAAATAAGGAGCTAGGTTTTC  898

seq1  ACAACAAAAGCTGGCATAATGAAGAATTC  929
      |||||||||||||||||||||||||||||
seq2  ACAACAAAAGCTGGCATAATGAAGAATTC  927

seq1: chr19_6098481_6099300
seq2: B6Ng01-008G03.g_67_885

seq1  GAATTCCCAAGGGTTTAGAGAATGCATTTAGATTTGGGCTGTGACTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGGTTTAGAGAATGCATTTAGATTTGGGCTGTGACTGCTT  50

seq1  TCAGTGTGTGCCCAGCCTGGGAGCCTCACTAGGCTCCACAATTCCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGTGCCCAGCCTGGGAGCCTCACTAGGCTCCACAATTCCTAAAG  100

seq1  TGAGAGACAAAGTGTCTGTCTGAAGACCTACCTTCTTTCTTTCTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACAAAGTGTCTGTCTGAAGACCTACCTTCTTTCTTTCTTTTTGT  150

seq1  TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTG  200

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  250

seq1  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTACTGGGACTAAAGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTACTGGGACTAAAGGTGT  300

seq1  GCATCACAACGCCCGGCTCGGAAGTCCTACCTTCTAAAGCCTGGGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAACGCCCGGCTCGGAAGTCCTACCTTCTAAAGCCTGGGGAGAT  350

seq1  GACTCAAGTAATGAAGCGCTTGTCACTCAAACTGAAGTACCTGAGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGTAATGAAGCGCTTGTCACTCAAACTGAAGTACCTGAGCTGGA  400

seq1  ATCTCCAAAATCCACATAACAGTGGGATGCATAGCATGAGGAGGGGTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAAATCCACATAACAGTGGGATGCATAGCATGAGGAGGGGTCGT  450

seq1  TATCCCAGCACTCCCGAGGAGAGATGAGAGGTAGAGACAAGAATCCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAGCACTCCCGAGGAGAGATGAGAGGTAGAGACAAGAATCCTAGA  500

seq1  ATCCCTTAGGTCAGCTAGCCTGCCGGGCCCATGCAGTGTGGAAATAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTAGGTCAGCTAGCCTGCCGGGCCCATGCAGTGTGGAAATAGCAA  550

seq1  AGATACCTGGAGTGAGAATTTTTGGATTTGGTTTCTTTAAAAAACATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTGGAGTGAGAATTTTTGGATTTGGTTTCTTTAAAAAACATAGA  600

seq1  AATATTGTAAGAGTATGTTTTCATTTTAACCCAAGGTGTCGATATGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTAAGAGTATGTTTTCATTTTAACCCAAGGTGTCGATATGGGGC  650

seq1  TGCTTCAGTCCACAGCAGCTGCGATTTGCCTCATGCTCTAGCAGGGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGTCCACAGCAGCTGCGATTTGCCTCATGCTCTAGCAGGGGCAT  700

seq1  GAATTTGCCAGCTGCAGACTAGTTTCTGCAATTGTGTGATGGCATTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCCAGCTGCAGACTAGTTTCTGCAATTGTGTGATGGCATTTGGA  750

seq1  TTTCTGGGAACTTTTCTGAGGATATACAAGTCTTAGGGCTGCTGAGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTCTGGGAACTTTTCTGAGGATATACAAGTCTTAGGGCTGCTGAGA-GT  799

seq1  AGTGTGGTTGGTTGGTTGGT  820
      ||||||||||| ||||||||
seq2  AGTGTGGTTGGGTGGTTGGT  819