BAC Information

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BAC

Clone NameB6Ng01-009D09
Chromosome19 (Build37)
Map Location 23,045,680 - 23,046,696
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneEG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009D09.bB6Ng01-009D09.g
ACCDH845215DH845216
length1,1331,017
definitionDH845215|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D09, 5' end.DH845216|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttaaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggctttttcccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggattgattcgca
ttcttctacacgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttttgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtctggcatggtgattccgccagaagttctttt
atccttgagaagactttttgctatcctaggttttttgttattccagacaa
atttgcaaattgctccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagcccattt
ttacaatgttgatcctgccaatccatgagcttgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagttttatcatac
agatctttcacttccttagttagagtcacgctcaagattattttatatat
ttgtgactattgaagaagggtgtgtttccctaatttcttttccagcctgt
ttattcttggtaaagagaaaggccattggactgttttgaggtttatttat
atcccaccttccttcacgaagctctcttaatccggttaggaagttctccg
ggggactatttttagggtctctaatacacgcac
gaattcttttcttgtttttattgaaacgagtaactggcctgaacttgtta
cagagtaacaggcaaatggactctttaaagaccagagcacaaagatattg
agttcatataatagggctatcgggcctgatagccccaaagctaagatact
tgtcctttcagtttttgttttctgctataatatgcagggaagggaaatgt
ttatttatttaatatgcataccacattgcccccccccccaaatcagaaac
atttacaattaaagactgactgatgttagaaatgactggcattattctta
aagatgagacaaagaggctatttcttgaggttcatccattcctttcaatg
tctgataaaaacaaaaagcctacaatttttttttcacaaactacaggcaa
tggggtaaaaaaaagcttagttaaatatctgacttttaaaattctatttc
acgttttgaagaaatgattttcacctaaaaaaaaaaatctgtcttgaggg
ctagcaatgtgacttagtgggtaaaggagcccggagccaagcctgatgac
ttaagttccatccctggattcaatgtggtagaagagaactaacttctgta
agttgtcctctgacctccacacatacaccacggcacactcatgctccctg
cagtgaataataaaaagtgtcataattttttcaaaaatccactttgattt
tttggtggtttcttgagttctttatatatttttggaaattagccctctat
cggatgtggggttagtggagatttttttcctaatctgtaggttgccaatt
tgtcttattgactatgtcctttgccttacagaagctttccagtttatgaa
gttctcatgtatcactttcttgatcttagagtgtgagcctttggagttct
gtttaggaaatttcccactacgccaatgattccaaggctcttttccacta
tcccttctcttagatgagtgtatctggttttatgtttgaggtcctgttca
tttggatttgagctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23045680_23046696
seq2: B6Ng01-009D09.g_71_1087 (reverse)

seq1  CAAAGCTCAAGTCCAAATGGATCAAGGACCTC-AACATAAAACCAGATAC  49
      |||||||||| |||||||| |   |||||||| |||||||||||||||||
seq2  CAAAGCTCAAATCCAAATGAA--CAGGACCTCAAACATAAAACCAGATAC  48

seq1  ACTCAATCTAAGAGAAGGGAAAGTGGGAAAGAGCCTTGGACTCATTGGCG  99
      |||| ||||||||||||||| ||||| ||||||||||||| |||||||||
seq2  ACTC-ATCTAAGAGAAGGGATAGTGGAAAAGAGCCTTGGAATCATTGGCG  97

seq1  TAGTGGGAAATTTCCTAAACAGAACTCCAAAGGCTCACACTCTAAGATCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGAAATTTCCTAAACAGAACTCCAAAGGCTCACACTCTAAGATCA  147

seq1  AG-AAGTGATACATGAG-ACTTCATGAAACTGGAAAGCTTCTGTAAGGCA  197
      || |||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  AGAAAGTGATACATGAGAACTTCAT-AAACTGGAAAGCTTCTGTAAGGCA  196

seq1  AAGGACATAGTCAATAAGACAAATTGGCAACCTACAGATTAGGAAAAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATAGTCAATAAGACAAATTGGCAACCTACAGATTAGGAAAAAAA  246

seq1  TCTTCACTAACCCCACATCCGATAGAGGGCTAATTTCC-AAAATATATAA  296
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTCCACTAACCCCACATCCGATAGAGGGCTAATTTCCAAAAATATATAA  296

seq1  AGAACTCAAGAAACCACCAAAAAATCAAAGTGGATTTTTGAAAAAATTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGAAACCACCAAAAAATCAAAGTGGATTTTTGAAAAAATTAT  346

seq1  GACACTTTTTATTATTCACTGCAGGGAGCATGAGTGTGCCGTGGTGTATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTTTATTATTCACTGCAGGGAGCATGAGTGTGCCGTGGTGTATG  396

seq1  TGTGGAGGTCAGAGGACAACTTACAGAAGTTAGTTCTCTTCTACCACATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTCAGAGGACAACTTACAGAAGTTAGTTCTCTTCTACCACATT  446

seq1  GAATCCAGGGATGGAACTTAAGTCATCAGGCTTGGCTCCGGGCTCCTTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGGGATGGAACTTAAGTCATCAGGCTTGGCTCCGGGCTCCTTTA  496

seq1  CCCACTAAGTCACATTGCTAGCCCTCAAGACAGATTTTTTTTTTTAGGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAAGTCACATTGCTAGCCCTCAAGACAGATTTTTTTTTTTAGGTG  546

seq1  AAAATCATTTCTTCAAAACGTGAAATAGAATTTTAAAAGTCAGATATTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTTCTTCAAAACGTGAAATAGAATTTTAAAAGTCAGATATTTA  596

seq1  ACTAAGCTTTTTTTTACCCCATTGCCTGTAGTTTGTGAAAAAAAAATTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTTTTTTTTACCCCATTGCCTGTAGTTTGTGAAAAAAAAATTGT  646

seq1  AGGCTTTTTGTTTTTATCAGACATTGAAAGGAATGGATGAACCTCAAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTTGTTTTTATCAGACATTGAAAGGAATGGATGAACCTCAAGAA  696

seq1  ATAGCCTCTTTGTCTCATCTTTAAGAATAATGCCAGTCATTTCTAACATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCTTTGTCTCATCTTTAAGAATAATGCCAGTCATTTCTAACATC  746

seq1  AGTCAGTCTTTAATTGTAAATGTTTCTGATTTGGGGGGGGGGGCAATGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCTTTAATTGTAAATGTTTCTGATTTGGGGGGGGGGGCAATGTG  796

seq1  GTATGCATATTAAATAAATAAACATTTCCCTTCCCTGCATATTATAGCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATATTAAATAAATAAACATTTCCCTTCCCTGCATATTATAGCAG  846

seq1  AAAACAAAAACTGAAAGGACAAGTATCTTAGCTTTGGGGCTATCAGGCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACTGAAAGGACAAGTATCTTAGCTTTGGGGCTATCAGGCCC  896

seq1  GATAGCCCTATTATATGAACTCAATATCTTTGTGCTCTGGTCTTTAAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCCTATTATATGAACTCAATATCTTTGTGCTCTGGTCTTTAAAGA  946

seq1  GTCCATTTGCCTGTTACTCTGTAACAAGTTCAGGCCAGTTACTCGTTTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTGCCTGTTACTCTGTAACAAGTTCAGGCCAGTTACTCGTTTCA  996

seq1  ATAAAAACAAGAAAAGAATTC  1017
      |||||||||||||||||||||
seq2  ATAAAAACAAGAAAAGAATTC  1017