BAC Information

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BAC

Clone NameB6Ng01-012F10
Chromosome19 (Build37)
Map Location 4,437,380 - 4,575,253
singlet/doubletdoublet
Overlap geneRhod, Syt12, 2010003K11Rik
Upstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628
Downstream genePcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012F10.bB6Ng01-012F10.g
ACCDH847460DH847461
length1,0931,049
definitionDH847460|Mus musculus domesticus DNA, BAC clone: B6Ng01-012F10, 5' end.DH847461|Mus musculus domesticus DNA, BAC clone: B6Ng01-012F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,574,149 - 4,575,253)(4,437,380 - 4,438,417)
sequence
gaattcccagggtagacagagaagggctggttgggagtatcataaacaca
ccaataccaagatggactgacggggcagaacagtcacaaatcagaaaggt
tttggatttcgcagcagtttgagacactacaaaagtacaaagcataactt
caaacttgtcaaagaaaaatgactctcaacctgaaatgtttctgtccact
tagctacagatcatgtatgaaaataaaacaacaaagtaagtcagatatgg
tagtgcacacctgtctaccccagcactcaggaggctctggaggaagaagg
attaagaaactggaggcatggtgtagtggtgcaggcctttaatcccagaa
cttgggaggcagaggcaggtggatctctgtgagttagaggccagcctggt
ctacagagttagttccaggacaggacagtcagagttacatagtgagtgag
accctgtcttgaaatgtccctttcccacaaaaaaaaaaaaaaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaactggaggcagaggcat
gcttgtcccagtacttgggaatgcagaggcaatctctgtaagttctaggt
cagcctggtcacacagtgaggttctaggctacacagtaagtctccgtctt
ccagtctttctcagtctctatcttacatatccacacacacatgcacgggg
gttgggggaggataactctagagcaaaaccctgctacttaaataaataag
tttagtaagactagacctagctgggccatggtagtgcatgcctttaatcc
tagtgctgggaggcagaagcaggcagatctctgtgaatttgagcccagcc
tggtctacagagtgagttccaagccaacctggactacacagaaaaagcct
gtctcgacaaaaccaaaccaaaccaacccaaccaaacctagggctagtgc
tgtggcttgaacagaatggtctctgtatacttacttgcttgaatgctggc
acagtgagtggcactgttactgggaggggtgactatttggagtatgtgac
ttgtgaggaatgtcctctgctggtggttttgaatctccctatg
gaattccagaacagctagggctacacacacagagaaaccctgtttctaat
agtggtatttcatacttgaagtcacagcacgatagaagcagaggcaggag
gatcattgatttgacatgaatgtagactacatacaaagactttgtctcaa
aaagaaaactaactaactaaaacataaaacataattaaaagagccctctc
tcatgccagggatttcctagacaaaggaagactaaggacaaggttggtcc
acccccctggtgaccactctggtcctctgccactcactccagtgcgtcct
gtaaaacatatatggttcatgagcctcttaagtggtggcacacaccttta
atcccagcactcatgaggcagaggtcagcatggtctacagagtaagttct
agggcagccaggactatacagagaaaccttgtgaacacacacacacacac
acacacacacacacacacaaaaccccataaacagttcatggacttttctg
cctagtgtctaggatgcctgccccaggccagtgttgcagagccttcccca
ccccctccacctttaggtgcctcctctgatctcctggttcccacgttggt
tgggttcccatgggcagtacctaaagacctggaaaatatctcctatactt
aaaaacaaaaaaactgtaactggtcaaagaaggtgacgtcagctttgcaa
accacaaaaccaaaggctgtgagatgggtatggtggtgcatacacgtgat
ctgagcaatccttgggccgagagacaggaggactgagcgtacaaggcctc
cacagtaatatctctgtctcaaaaacaaaacaggaactcactaaaggtaa
aacgacaaaaatacaactcctctctctcccaaaaaaaaatccaacaacta
taaaaaccactggtattcagagtagcaagcaagactgtgccctatttgcc
aggtcagccttctctggcttcttccattcaaattaccaacttctgcccat
tcccagaaggccagaaggaacgtggggaccgaaagaaggctgcctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4574149_4575253
seq2: B6Ng01-012F10.b_49_1141 (reverse)

seq1  CATA-GGAGACTTCAAAACCCACCAGCACAGTGACACTTCCTCCAACAAA  49
      |||| ||||| ||||||| ||||||||| || |||| ||||||  || ||
seq2  CATAGGGAGA-TTCAAAA-CCACCAGCAGAG-GACA-TTCCTC--AC-AA  43

seq1  GTCACACTACTCCAAAAAGTCACACCTCCTAGTAACAGTGCCACTCACTG  99
      |||||| ||||||||| |||||| ||||| ||||||||||||||||||||
seq2  GTCACA-TACTCCAAATAGTCACCCCTCCCAGTAACAGTGCCACTCACTG  92

seq1  TGGCCAAGCATTCAAGCATGTAAGTCTACAGGGGCCATTCCTGTTCAAGC  149
      ||  | |||||||||||| |||||| ||||| | ||||| ||||||||||
seq2  TG--CCAGCATTCAAGCAAGTAAGTATACAGAGACCATT-CTGTTCAAGC  139

seq1  CACAGCACTAGCCCTAGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTTGTC  199
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  CACAGCACTAGCCCTAGGTTTGG-TTGGGTTGGTTTGGTTTGGTTTTGTC  188

seq1  GAGACAGGCTTTTTCTGTGTAGTCCAGGTTGGCTTGGAACTCACTCTGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCTTTTTCTGTGTAGTCCAGGTTGGCTTGGAACTCACTCTGTA  238

seq1  GACCAGGCTGGGCTCAAATTCACAGAGATCTGCCTGCTTCTGCCTCCCTA  299
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACCAGGCTGGGCTCAAATTCACAGAGATCTGCCTGCTTCTGCCTCCC-A  287

seq1  GCACTAGGATTAAAGGCATGCACTACCATGGCCCAGCTAGGTCTAGTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGGATTAAAGGCATGCACTACCATGGCCCAGCTAGGTCTAGTCTT  337

seq1  ACTAAACTTATTTATTTAAGTAGCAGGGTTTTGCTCTAGAGTTATCCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTTATTTATTTAAGTAGCAGGGTTTTGCTCTAGAGTTATCCTCC  387

seq1  CCCAACCCCCGTGCATGTGTGTGTGGATATGTAAGATAGAGACTGAGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCCCGTGCATGTGTGTGTGGATATGTAAGATAGAGACTGAGAAA  437

seq1  GACTGGAAGACGGAGACTTACTGTGTAGCCTAGAACCTCACTGTGTGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGACGGAGACTTACTGTGTAGCCTAGAACCTCACTGTGTGACC  487

seq1  AGGCTGACCTAGAACTTACAGAGATTGCCTCTGCATTCCCAAGTACTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACCTAGAACTTACAGAGATTGCCTCTGCATTCCCAAGTACTGGG  537

seq1  ACAAGCATGCCTCTGCCTCCAGTTTCTTTCTTTCTTTCTTTCTTTCTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATGCCTCTGCCTCCAGTTTCTTTCTTTCTTTCTTTCTTTCTTTC  587

seq1  TTTCTTTCTTTCTTTTTTTTTTTTTTTTGTGGGAAAGGGACATTTCAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTTTTTTTTTTTTTTGTGGGAAAGGGACATTTCAAGA  637

seq1  CAGGGTCTCACTCACTATGTAACTCTGACTGTCCTGTCCTGGAACTAACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCACTCACTATGTAACTCTGACTGTCCTGTCCTGGAACTAACT  687

seq1  CTGTAGACCAGGCTGGCCTCTAACTCACAGAGATCCACCTGCCTCTGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACCAGGCTGGCCTCTAACTCACAGAGATCCACCTGCCTCTGCCT  737

seq1  CCCAAGTTCTGGGATTAAAGGCCTGCACCACTACACCATGCCTCCAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTCTGGGATTAAAGGCCTGCACCACTACACCATGCCTCCAGTTT  787

seq1  CTTAATCCTTCTTCCTCCAGAGCCTCCTGAGTGCTGGGGTAGACAGGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCTTCTTCCTCCAGAGCCTCCTGAGTGCTGGGGTAGACAGGTGT  837

seq1  GCACTACCATATCTGACTTACTTTGTTGTTTTATTTTCATACATGATCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACCATATCTGACTTACTTTGTTGTTTTATTTTCATACATGATCTG  887

seq1  TAGCTAAGTGGACAGAAACATTTCAGGTTGAGAGTCATTTTTCTTTGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGTGGACAGAAACATTTCAGGTTGAGAGTCATTTTTCTTTGACA  937

seq1  AGTTTGAAGTTATGCTTTGTACTTTTGTAGTGTCTCAAACTGCTGCGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAGTTATGCTTTGTACTTTTGTAGTGTCTCAAACTGCTGCGAAA  987

seq1  TCCAAAACCTTTCTGATTTGTGACTGTTCTGCCCCGTCAGTCCATCTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACCTTTCTGATTTGTGACTGTTCTGCCCCGTCAGTCCATCTTGG  1037

seq1  TATTGGTGTGTTTATGATACTCCCAACCAGCCCTTCTCTGTCTACCCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGTGTTTATGATACTCCCAACCAGCCCTTCTCTGTCTACCCTGG  1087

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1093

seq1: chr19_4437380_4438417
seq2: B6Ng01-012F10.g_67_1115

seq1  GAATTCCAGAACAGCTAGGGCTACACACACAGAGAAACCCTGTTTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGCTAGGGCTACACACACAGAGAAACCCTGTTTCTAAT  50

seq1  AGTGGTATTTCATACTTGAAGTCACAGCACGATAGAAGCAGAGGCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATTTCATACTTGAAGTCACAGCACGATAGAAGCAGAGGCAGGAG  100

seq1  GATCATTGATTTGACATGAATGTAGACTACATACAAAGACTTTGTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTGATTTGACATGAATGTAGACTACATACAAAGACTTTGTCTCAA  150

seq1  AAAGAAAACTAACTAACTAAAACATAAAACATAATTAAAAGAGCCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACTAACTAACTAAAACATAAAACATAATTAAAAGAGCCCTCTC  200

seq1  TCATGCCAGGGATTTCCTAGACAAAGGAAGACTAAGGACAAGGTTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCAGGGATTTCCTAGACAAAGGAAGACTAAGGACAAGGTTGGTCC  250

seq1  ACCCCCCTGGTGACCACTCTGGTCCTCTGCCACTCACTCCAGTGCGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCTGGTGACCACTCTGGTCCTCTGCCACTCACTCCAGTGCGTCCT  300

seq1  GTAAAACATATATGGTTCATGAGCCTCTTAAGTGGTGGCACACACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACATATATGGTTCATGAGCCTCTTAAGTGGTGGCACACACCTTTA  350

seq1  ATCCCAGCACTCATGAGGCAGAGGTCAGCATGGTCTACAGAGTAAGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCATGAGGCAGAGGTCAGCATGGTCTACAGAGTAAGTTCT  400

seq1  AGGGCAGCCAGGACTATACAGAGAAACCTTGTGAACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCCAGGACTATACAGAGAAACCTTGTGAACACACACACACACAC  450

seq1  ACACACACACACACACACAAAACCCCATAAACAGTTCATGGACTTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAAAACCCCATAAACAGTTCATGGACTTTTCTG  500

seq1  CCTAGTGTCTAGGATGCCTGCCCCAGGCCAGTGTTGCAGAGCCTTCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGTCTAGGATGCCTGCCCCAGGCCAGTGTTGCAGAGCCTTCCCCA  550

seq1  CCCCCTCCACCTTTAGGTGCCTCCTCTGATCTCCTGGTTCCCACGTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCACCTTTAGGTGCCTCCTCTGATCTCCTGGTTCCCACGTTGGT  600

seq1  TGGGTTCCCATGGGCAGTACCTAAAGACCTGGAAAATATCTCCTATACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCCCATGGGCAGTACCTAAAGACCTGGAAAATATCTCCTATACTT  650

seq1  AAAAACAAAAAAACTGTAACTGGTCAAAGAAGGTGACGTCAGCTTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAACTGTAACTGGTCAAAGAAGGTGACGTCAGCTTTGCAA  700

seq1  ACCACAAAACCAAAGGCTGTGAGATGGGTATGGTGGTGCATACACGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAACCAAAGGCTGTGAGATGGGTATGGTGGTGCATACACGTGAT  750

seq1  CTGAGCAATCCTTGGGCCGAGAGACAGGAGGACTGAGCGTACAAGGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAATCCTTGGGCCGAGAGACAGGAGGACTGAGCGTACAAGGCCTC  800

seq1  CACAGTAATATC-CTGTCTCAAAAACAAAACAGGAAC-CACTAAA-GTAA  847
      |||||||||||| |||||||||||||||||||||||| ||||||| ||||
seq2  CACAGTAATATCTCTGTCTCAAAAACAAAACAGGAACTCACTAAAGGTAA  850

seq1  AACGACAAAAATACAACCCC---CCCCCCCAAAAAAAAACCCAACAACCA  894
      ||||||||||||||||| ||   | | |||||||||||| |||||||| |
seq2  AACGACAAAAATACAACTCCTCTCTCTCCCAAAAAAAAATCCAACAACTA  900

seq1  TAAAAACCACTGGTATTCAGAGTAGCAAGCAAGACTGTGCCCTATTTGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCACTGGTATTCAGAGTAGCAAGCAAGACTGTGCCCTATTTGCC  950

seq1  AGGTCAG-CTTCTCTGGCTCCTTCCA-TCAAATTACCCACTTCTGCACAA  992
      ||||||| ||||||||||| |||||| |||||||||| |||||||| || 
seq2  AGGTCAGCCTTCTCTGGCTTCTTCCATTCAAATTACCAACTTCTGCCCAT  1000

seq1  TCCCAG-AGGCCAGAAGG-ACGTGGGGACAGGAAAAGAAGGCT---TGCT  1037
      |||||| ||||||||||| |||||||||| |  ||||||||||   ||||
seq2  TCCCAGAAGGCCAGAAGGAACGTGGGGACCG--AAAGAAGGCTGCCTGCT  1048

seq1  G  1038
      |
seq2  G  1049