BAC Information

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BAC

Clone NameB6Ng01-012H07
Chromosome19 (Build37)
Map Location 15,594,633 - 15,715,859
singlet/doubletdoublet
Overlap genenone
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012H07.bB6Ng01-012H07.g
ACCDH847545DH847546
length1,1431,078
definitionDH847545|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H07, 5' end.DH847546|Mus musculus domesticus DNA, BAC clone: B6Ng01-012H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,594,633 - 15,595,787)(15,714,761 - 15,715,859)
sequence
gaattcacagaagctcgtgagccagataccttggcctatacggcagaaaa
caatgaaagtttccatgttataacatacacttgcatgatatttttatagt
aatgtaagaaagaatgttatgaacacgctgaataaaatatggtgtttgta
tgtgacagcaaagtagagaagtctgctataggccttgcatggtatctgat
attagtgaatttcaaaaatgatagcatctggcagtcacaaggatggatat
ttgttcaaacatagaggctacttgggagataaaatactccaagataattt
ggttctgcaacattccaactctccaccatcactaaaatttgagtcagtca
atcaagcttgtaaaatgttccatacaagtgcctttttatgagtatttcac
aatagaattaatgaatgtatactaacacagccattccagtgcagctactc
atcctatgaacctcttaagacttttcactgaagcacaagtaattgcctga
agtttgaattcacaaaggctgcaatcacatgagcaactccagcccaatta
cagaactacaagcttccctgccagttaggcactgtgatcccttcagtgac
caaggcagataggaacgcacaatggcacctggggagacccctgattcagc
caatagaactttggagcagaaatgtgtcatctgttgatgatcgcttcact
cagggaagtgaacctaagatacagctgagtttagaagacagcaagcagtg
taagccgccattttgcgccaccagatcacaatgttggcctccatagaaga
atgctctccccaaaagaaactggtaagtgcaggataaccttgaccatctt
aacccctttaattcttcttttgacttttgaccaccacgttcctactgtga
cgttcctcacagcttttgttcaagaagcttgttttatcgaaaataaggaa
tgcagtggaccattttcactgagtttctttatcagcccaaagactagaaa
cagtacttcagagatggacatgcttccaggaggcagtctgttttcatata
gaaagccatttctaccacagctaaaatgcaggatactgaaatgaagaggt
tatctcactacgtctaatgagccactagaaaggttttactttc
gaattctaagtctcctttctatcccccgaatctcagaggctgtcaaggga
tagctgttcatccatatataaggattgaaagcaatattgctaaagtctga
aagaataaggtgacatctacaaggtcaagcaaattcagaagctgacattt
gggtcataactaatatgggtcagagaataaagcattatgttgactccaaa
ggcattttcttttagaaatgggcagagaggctgagcaaccaggcatggcc
agtgtgacttgacacaaactgcacagaaaatcatctagtattcttgtcat
gtctggtacaaccactgtctctaggctcaggctccacctagggcagaaga
gggcctccttctggttgcctttggattaagatgtagaactctcagctcct
cacccaacatcacgttctgtgccctccctcttctgtgttatcattgattt
ttttttttcgagtctgatggagattgtggtggtttaaatatgcttggccc
tgggaagtgacactgttaggaggtgtggctttattggaggaggtatagca
ttgttggaggaagtatgtcactgtgggagtgggctttggaggtctccttc
tatgttcaggttccacccagggaagaaaagggtctccttctggctgcctt
tggatcaaaatgtagaactctcagctcctcctccaacattatgtctgcct
gaatgctgccatgctttctgccacaatgataatgggactgaacctctaaa
actgtaagccagcctcatctaaatgtttatctttgtaagagttgccttgg
taatggtgtctcttcacaaaaataaaacccaaactaagacagatatggag
aagaattcagatatgagctaagccagtgttcattggtgggcaacttccag
agtcataataatataacaccatgtgtaaatagtggtggtcctctgactgg
caaatgaagctaatgtaaagaagaatgcccattacagcctctgccttatc
aatgctgccttgagtagagatgactggatccctcttttaattatctagtc
tttatgagtaaactgactcaactcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15594633_15595787
seq2: B6Ng01-012H07.b_45_1187

seq1  GAATTCACAGAAGCTCGTGAGCCAGATACCTTGGCCTATACGGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAGCTCGTGAGCCAGATACCTTGGCCTATACGGCAGAAAA  50

seq1  CAATGAAAGTTTCCATGTTATAACATACACTTGCATGATATTTTTATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGTTTCCATGTTATAACATACACTTGCATGATATTTTTATAGT  100

seq1  AATGTAAGAAAGAATGTTATGAACACGCTGAATAAAATATGGTGTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGAAAGAATGTTATGAACACGCTGAATAAAATATGGTGTTTGTA  150

seq1  TGTGACAGCAAAGTAGAGAAGTCTGCTATAGGCCTTGCATGGTATCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGCAAAGTAGAGAAGTCTGCTATAGGCCTTGCATGGTATCTGAT  200

seq1  ATTAGTGAATTTCAAAAATGATAGCATCTGGCAGTCACAAGGATGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGAATTTCAAAAATGATAGCATCTGGCAGTCACAAGGATGGATAT  250

seq1  TTGTTCAAACATAGAGGCTACTTGGGAGATAAAATACTCCAAGATAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAAACATAGAGGCTACTTGGGAGATAAAATACTCCAAGATAATTT  300

seq1  GGTTCTGCAACATTCCAACTCTCCACCATCACTAAAATTTGAGTCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCAACATTCCAACTCTCCACCATCACTAAAATTTGAGTCAGTCA  350

seq1  ATCAAGCTTGTAAAATGTTCCATACAAGTGCCTTTTTATGAGTATTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTTGTAAAATGTTCCATACAAGTGCCTTTTTATGAGTATTTCAC  400

seq1  AATAGAATTAATGAATGTATACTAACACAGCCATTCCAGTGCAGCTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTAATGAATGTATACTAACACAGCCATTCCAGTGCAGCTACTC  450

seq1  ATCCTATGAACCTCTTAAGACTTTTCACTGAAGCACAAGTAATTGCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGAACCTCTTAAGACTTTTCACTGAAGCACAAGTAATTGCCTGA  500

seq1  AGTTTGAATTCACAAAGGCTGCAATCACATGAGCAACTCCAGCCCAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAATTCACAAAGGCTGCAATCACATGAGCAACTCCAGCCCAATTA  550

seq1  CAGAACTACAAGCTTCCCTGCCAGTTAGGCACTGTGATCCCTTCAGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTACAAGCTTCCCTGCCAGTTAGGCACTGTGATCCCTTCAGTGAC  600

seq1  CAAGGCAGATAGGAACGCACAATGGCACCTGGGGAGACCCCTGATTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGATAGGAACGCACAATGGCACCTGGGGAGACCCCTGATTCAGC  650

seq1  CAATAGAACTTTGGAGCAGAAATGTGTCATCTGTTGATGATCGCTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAACTTTGGAGCAGAAATGTGTCATCTGTTGATGATCGCTTCACT  700

seq1  CAGGGAAGTGAACCTAAGATACAGCTGAGTTTAGAAGACAGCAAGCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGTGAACCTAAGATACAGCTGAGTTTAGAAGACAGCAAGCAGTG  750

seq1  TAAGCCGCCATTTTGCGCCACCAGATCACAATGTTGGCCTCCATAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCGCCATTTTGCGCCACCAGATCACAATGTTGGCCTCCATAGAAGA  800

seq1  ATGCTCTCCCCAAAAGAAACTGGTAAGTGCAGGATAACCTTGACCATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCCCCAAAAGAAACTGGTAAGTGCAGGATAACCTTGACCATCTT  850

seq1  AACCCCTTTAATTCTTCTTTTGACTTTTGACCACCAAGGTTCCTACTGTG  900
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  AACCCCTTTAATTCTTCTTTTGACTTTTGACCACC-ACGTTCCTACTGTG  899

seq1  ACGTTCCTCACAGCTTTTGTTCAAGAAGCTTGTTTTATCGAAAATAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCCTCACAGCTTTTGTTCAAGAAGCTTGTTTTATCGAAAATAAGGA  949

seq1  ATGCAGTGGACCATTTTCACTGAGTTTCTTTATCAGCCCAAAGACTAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGGACCATTTTCACTGAGTTTCTTTATCAGCCCAAAGACTAGAA  999

seq1  ACAGTACTTCAAGAGATTGGACAATGCCTTCCAGGAGGCAGTCTGTTTTC  1050
      |||||||||| ||||| ||||| ||| |||||||||||||||||||||| 
seq2  ACAGTACTTC-AGAGA-TGGAC-ATG-CTTCCAGGAGGCAGTCTGTTTT-  1044

seq1  CATATAGAAAGCCATTTCTACCACAGCTAAAATGCCAGGATACTGAATAT  1100
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CATATAGAAAGCCATTTCTACCACAGCTAAAATG-CAGGATACTGAA-AT  1092

seq1  GAAAGAGGTTTATCTCACTACGTCTTTAATGAGCCACTAGAAAGGTTTTA  1150
      | |||||| |||||||||||||||  ||||||||||||||||||||||||
seq2  G-AAGAGG-TTATCTCACTACGTC--TAATGAGCCACTAGAAAGGTTTTA  1138

seq1  CTTTC  1155
      |||||
seq2  CTTTC  1143

seq1: chr19_15714761_15715859
seq2: B6Ng01-012H07.g_67_1144 (reverse)

seq1  CCCTGATGTGAGTCATGTTTTACTCATAAAGACTTAGAATAATTAGAGAG  50
      ||||||  |||||||   ||||||||||||||| ||| ||||||| |   
seq2  CCCTGAGTTGAGTCA--GTTTACTCATAAAGAC-TAG-ATAATTAAAAGA  46

seq1  GGGATCCAGTTCATTCCTTCTACCCCAAGGCAACCATTTTGATAAGGCAG  100
      ||||||||| ||||  || ||    ||||||| |    ||||||||||||
seq2  GGGATCCAG-TCATCTCTACT----CAAGGCAGC---ATTGATAAGGCAG  88

seq1  AGCTTGTAATGGGCCATTCTTCTATACATTTAGCTTCCATTTTGCCAGTT  150
      ||  ||||||||| ||||||||| |||| ||||||||   |||||||| |
seq2  AGGCTGTAATGGG-CATTCTTCTTTACA-TTAGCTTC--ATTTGCCAG-T  133

seq1  CAGAGGACCACCACCTATTTACACATGGTGTTTATTATTATTTATGACTC  200
      ||||||||||||| ||||||||||||||||||   ||||| |||||||||
seq2  CAGAGGACCACCA-CTATTTACACATGGTGTT--ATATTA-TTATGACTC  179

seq1  TGGAAGTTGCCCACCAATGAACACTGGCTTAGCTCATATCTGAATTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTGCCCACCAATGAACACTGGCTTAGCTCATATCTGAATTCTTC  229

seq1  TCCATATCTGTCTTAGTTTGGGTTTTATTTTTTGTGAAGAGACACCATTA  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCATATCTGTCTTAGTTTGGGTTTTA-TTTTTGTGAAGAGACACCATTA  278

seq1  CCAAGGCAACTCTTACAAAGATAAACATTTAGATGAGGCTGGCTTACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAACTCTTACAAAGATAAACATTTAGATGAGGCTGGCTTACAGT  328

seq1  TTTAGAGGTTCAGT-CCATTATCATTGTGGCAGAAAGCATGGCAGCATTC  399
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGTTCAGTCCCATTATCATTGTGGCAGAAAGCATGGCAGCATTC  378

seq1  AGGCAGACATAATGTTGGAGGAGGAGCTGAGAGTTCTACATTTTGATCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACATAATGTTGGAGGAGGAGCTGAGAGTTCTACATTTTGATCCA  428

seq1  AAGGCAGCCAGAAGGAGACCCTTTTCTTCCCTGGGTGGAACCTGAACATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCCAGAAGGAGACCCTTTTCTTCCCTGGGTGGAACCTGAACATA  478

seq1  GAAGGAGACCTCCAAAGCCCACTCCCACAGTGACATACTTCCTCCAACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGACCTCCAAAGCCCACTCCCACAGTGACATACTTCCTCCAACAA  528

seq1  TGCTATACCTCCTCCAATAAAGCCACACCTCCTAACAGTGTCACTTCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATACCTCCTCCAATAAAGCCACACCTCCTAACAGTGTCACTTCCCA  578

seq1  GGGCCAAGCATATTTAAACCACCACAATCTCCATCAGACTCGAAAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGCATATTTAAACCACCACAATCTCCATCAGACTCGAAAAAAAA  628

seq1  AAATCAATGATAACACAGAAGAGGGAGGGCACAGAACGTGATGTTGGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATGATAACACAGAAGAGGGAGGGCACAGAACGTGATGTTGGGTG  678

seq1  AGGAGCTGAGAGTTCTACATCTTAATCCAAAGGCAACCAGAAGGAGGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAGAGTTCTACATCTTAATCCAAAGGCAACCAGAAGGAGGCCC  728

seq1  TCTTCTGCCCTAGGTGGAGCCTGAGCCTAGAGACAGTGGTTGTACCAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCCCTAGGTGGAGCCTGAGCCTAGAGACAGTGGTTGTACCAGAC  778

seq1  ATGACAAGAATACTAGATGATTTTCTGTGCAGTTTGTGTCAAGTCACACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGAATACTAGATGATTTTCTGTGCAGTTTGTGTCAAGTCACACT  828

seq1  GGCCATGCCTGGTTGCTCAGCCTCTCTGCCCATTTCTAAAAGAAAATGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCCTGGTTGCTCAGCCTCTCTGCCCATTTCTAAAAGAAAATGCC  878

seq1  TTTGGAGTCAACATAATGCTTTATTCTCTGACCCATATTAGTTATGACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTCAACATAATGCTTTATTCTCTGACCCATATTAGTTATGACCC  928

seq1  AAATGTCAGCTTCTGAATTTGCTTGACCTTGTAGATGTCACCTTATTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAGCTTCTGAATTTGCTTGACCTTGTAGATGTCACCTTATTCTT  978

seq1  TCAGACTTTAGCAATATTGCTTTCAATCCTTATATATGGATGAACAGCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTTAGCAATATTGCTTTCAATCCTTATATATGGATGAACAGCTA  1028

seq1  TCCCTTGACAGCCTCTGAGATTCGGGGGATAGAAAGGAGACTTAGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGACAGCCTCTGAGATTCGGGGGATAGAAAGGAGACTTAGAATTC  1078