BAC Information

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BAC

Clone NameB6Ng01-012K08
Chromosome19 (Build37)
Map Location 24,886,096 - 25,016,125
singlet/doubletdoublet
Overlap genePgm5, LOC672195, Foxd4, Cbwd1
Upstream geneApba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik
Downstream geneDock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012K08.bB6Ng01-012K08.g
ACCDH847683DH847684
length1,2001,026
definitionDH847683|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K08, 5' end.DH847684|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,014,903 - 25,016,125)(24,886,096 - 24,887,140)
sequence
gaattcttctgttgtccttcctaaattttttgttattgtacaaatgtgat
ttaaattaaaatgaatttaagtatgattgtaacttttttcaccaaaatag
ttattgtagaaaatatacataaagcaaatagaaaatatcagaaaatgtaa
agttcataaagagtaaatttaaagatttggagatgtgtgcattctgtttt
tagccacataagattacttacacagaagtagggttgtgatataaattctg
tagttttttgttttttcaattttgctcatgttttttaattttatttctaa
tcctgtaaaagaacagattagaaaatagtagtccagtggttagaatttcc
tgaatttcctgaaagtagttttttaaagcaaactacttaatgttaagtga
attttatatttctttgaaaattatgataaattttataacttttttatcaa
ctagactgtccttattcccatcatagtagatactaaattttatgcatttc
tttaacatatatatacacacagacagacagacagacacacagagacacag
acacacacacttgtgaactgaaaattattctctgatctaaaactctggag
gcttatctttataggatcaataaataattctttttggatgagcttacaaa
gtaatgtatggaattcttctgtagagtgagtaggttgggagtaaactgaa
cccaagctagttattaattgaaatgttggcttaaatatgtttctatggtt
ttgtgagttcttaacattttttttctgacacttgtcctttgctcttttag
gcaagttgcattggcagacatgattctcatcaataaaacagacttggttt
cagaagaggagctaaacaacttaagaacaactatcaggtacagtgcactt
gactattgtagtttgaaagccagaagaaagaatatttgatgttttatcat
taagagatgataaatttggagaagctaggtctgtttactgaagtgcaata
gtttgtacgtactgaaatgtcacatgacccccattattatatatagctct
acatgccattaaaaataaatctatttcagtttaagtgacaggtgaatata
agtatgttaatgccttcatataatttaacatgtaaatattaaccatggca
ttgcctataggaataaagatagtctaagtgaactgcctcaaggatcataa

gaattccaggaaccagctgagcatgatcaagataagctacagtctgtatt
gtagactgaggattggcagacaaccacagcaaaccacagactcacgggta
agtgctttcatatgtgttatatgggactccttagcccagcctcacagcca
ggcccagctgcatgtttctgatggcccctgacctacctgtgacctcctca
gagtctttctgtaaccaccctttctaagccccctcctcaccaagtttatg
gtgccaagttcctatccccataccttatattccaatttgtgtgcccatgc
tttttttctttacatgttattttctgtcttgttagatggtgagttctgcc
atagcaagggaccacatctagggcatagaacgtacttagaaaatattttc
tagcgaattaatactggacacgcaggtggcactgagagcaaaaaagggag
gcaggggagtcgaaggtcactagtgtgtcactgacctgtttatacatatg
gaccctttgtggccttgtttgtagtcaaaacattatcatagctggaccct
ttgaatgtcttcaggaatgctggcctcctgtaagagtagaactctcccta
gtgaacaggcctggagcctgcatgtttgccttgccttgcacagctttcgg
cacagccccaagcacagataggagcatcataaatattactaaatgatgat
gacaccagggatgatttagtacctccacgtgggtggagacagaccttggg
ccacaaacacacttccaatgtgcattgcttcgccaatcatctgacccaga
tgttttcacacccagctcatctgtaccaagaatgagacacattcagatga
cagggtctccaaagaatgccatttcaagctgaaagtttattatctggggt
aatggaatctttgtctcgtgatactgtgagatggagttaaaggcatggaa
gactttccttgggaacaccagtttatttgtggacattaaggttggatact
cgtcagtcataggtgccttgccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25014903_25016125
seq2: B6Ng01-012K08.b_42_1241 (reverse)

seq1  TTATGATCCTTGAAGCAAGTCAACCTTAGACCTTATCTTATATTCCTATA  50
      ||||||||||||| |||  |||  |||||||  |||||| ||||||||||
seq2  TTATGATCCTTGAGGCAGTTCA--CTTAGAC--TATCTT-TATTCCTATA  45

seq1  GAGCAATACCCATGGTTTAAAATATTTTACATGTTAAAATTTATATTTGA  100
      | |||||  ||||||||   |||| |||||||||||||  |||||  |||
seq2  G-GCAAT-GCCATGGTT---AATA-TTTACATGTTAAA--TTATA--TGA  85

seq1  AGGCATTTAACATACTTATAATTTTCACTGTTCACTAAAACTGAAAATAG  150
      ||||| ||||||||||||||   |||||   ||||| |||||| ||||||
seq2  AGGCA-TTAACATACTTATA---TTCACCTGTCACTTAAACTG-AAATAG  130

seq1  ATTTATTTTTAATTGGCATGTAAGAGCTATATATAATAATGGGGGTCATG  200
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  ATTTATTTTTAA-TGGCATGT-AGAGCTATATATAATAATGGGGGTCATG  178

seq1  TGACATTTCAGTACGTACAAACTATTGCACTTCAGTAAACAGACCTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCAGTACGTACAAACTATTGCACTTCAGTAAACAGACCTAGCT  228

seq1  TCTCCAAATTTATCATCTCTTAATGGTAAAAACATCAAATATTCTTTCTT  300
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  TCTCCAAATTTATCATCTCTTAATGAT-AAAACATCAAATATTCTTTCTT  277

seq1  CTGGCTTTCAAACTACAATAGTCAAGTGCACTGTACCTGATAGTTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCAAACTACAATAGTCAAGTGCACTGTACCTGATAGTTGTTCT  327

seq1  TAAGTTGTTTAGCTCCTCTTCTGAAACCAAGTCTGTTTTATTGATGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTTTAGCTCCTCTTCTGAAACCAAGTCTGTTTTATTGATGAGAA  377

seq1  TCATGTCTGCCAATGCAACTTGCCTAAAAGAGCAAAGGACAAGTGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGCCAATGCAACTTGCCTAAAAGAGCAAAGGACAAGTGTCAGA  427

seq1  AAAAAAATGTTAAGAACTCACAAAACCATAGAAACATATTTAAGCCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTTAAGAACTCACAAAACCATAGAAACATATTTAAGCCAACA  477

seq1  TTTCAATTAATAACTAGCTTGGGTTCAGTTTACTCCCAACCTACTCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTAATAACTAGCTTGGGTTCAGTTTACTCCCAACCTACTCACTC  527

seq1  TACAGAAGAATTCCATACATTACTTTGTAAGCTCATCCAAAAAGAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGAATTCCATACATTACTTTGTAAGCTCATCCAAAAAGAATTAT  577

seq1  TTATTGATCCTATAAAGATAAGCCTCCAGAGTTTTAGATCAGAGAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATCCTATAAAGATAAGCCTCCAGAGTTTTAGATCAGAGAATAAT  627

seq1  TTTCAGTTCACAAGTGTGTGTGTCTGTGTCTCTGTGTGTCTGTCTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCACAAGTGTGTGTGTCTGTGTCTCTGTGTGTCTGTCTGTCTG  677

seq1  TCTGTGTGTATATATATGTTAAAGAAATGCATAAAATTTAGTATCTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTATATATATGTTAAAGAAATGCATAAAATTTAGTATCTACTA  727

seq1  TGATGGGAATAAGGACAGTCTAGTTGATAAAAAAGTTATAAAATTTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAATAAGGACAGTCTAGTTGATAAAAAAGTTATAAAATTTATCA  777

seq1  TAATTTTCAAAGAAATATAAAATTCACTTAACATTAAGTAGTTTGCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAAAGAAATATAAAATTCACTTAACATTAAGTAGTTTGCTTTA  827

seq1  AAAAACTACTTTCAGGAAATTCAGGAAATTCTAACCACTGGACTACTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTACTTTCAGGAAATTCAGGAAATTCTAACCACTGGACTACTATT  877

seq1  TTCTAATCTGTTCTTTTACAGGATTAGAAATAAAATTAAAAAACATGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCTGTTCTTTTACAGGATTAGAAATAAAATTAAAAAACATGAGC  927

seq1  AAAATTGAAAAAACAAAAAACTACAGAATTTATATCACAACCCTACTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAAAAAACAAAAAACTACAGAATTTATATCACAACCCTACTTCT  977

seq1  GTGTAAGTAATCTTATGTGGCTAAAAACAGAATGCACACATCTCCAAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTAATCTTATGTGGCTAAAAACAGAATGCACACATCTCCAAATC  1027

seq1  TTTAAATTTACTCTTTATGAACTTTACATTTTCTGATATTTTCTATTTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTACTCTTTATGAACTTTACATTTTCTGATATTTTCTATTTGC  1077

seq1  TTTATGTATATTTTCTACAATAACTATTTTGGTGAAAAAAGTTACAATCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATATTTTCTACAATAACTATTTTGGTGAAAAAAGTTACAATCA  1127

seq1  TACTTAAATTCATTTTAATTTAAATCACATTTGTACAATAACAAAAAATT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATTCATTTTAATTTAAATCACATTTGTACAATAACAAAAAATT  1177

seq1  TAGGAAGGACAACAGAAGAATTC  1223
      |||||||||||||||||||||||
seq2  TAGGAAGGACAACAGAAGAATTC  1200

seq1: chr19_24886096_24887140
seq2: B6Ng01-012K08.g_65_1090

seq1  GAATTCCAGGAACCAGCTGAGCATGATCAAGATAAGCTACAGTCTGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAACCAGCTGAGCATGATCAAGATAAGCTACAGTCTGTATT  50

seq1  GTAGACTGAGGATTGGCAGACAACCACAGCAAACCACAGACTCACGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTGAGGATTGGCAGACAACCACAGCAAACCACAGACTCACGGGTA  100

seq1  AGTGCTTTCATATGTGTTATATGGGACTCCTTAGCCCAGCCTCACAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCATATGTGTTATATGGGACTCCTTAGCCCAGCCTCACAGCCA  150

seq1  GGCCCAGCTGCATGTTTCTGATGGCCCCTGACCTACCTGTGACCTCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTGCATGTTTCTGATGGCCCCTGACCTACCTGTGACCTCCTCA  200

seq1  GAGTCTTTCTGTAACCACCCTTTCTAAGCCCCCTCCTCACCAAGTTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTCTGTAACCACCCTTTCTAAGCCCCCTCCTCACCAAGTTTATG  250

seq1  GTGCCAAGTTCCTATCCCCATACCTTATATTCCAATTTGTGTGCCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGTTCCTATCCCCATACCTTATATTCCAATTTGTGTGCCCATGC  300

seq1  TTTTTTTCTTTACATGTTATTTTCTGTCTTGTTAGATGGTGAGTTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTACATGTTATTTTCTGTCTTGTTAGATGGTGAGTTCTGCC  350

seq1  ATAGCAAGGGACCACATCTAGGGCATAGAACGTACTTAGAAAATATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGGGACCACATCTAGGGCATAGAACGTACTTAGAAAATATTTTC  400

seq1  TAGCGAATTAATACTGGACACGCAGGTGGCACTGAGAGCAAAAAAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAATTAATACTGGACACGCAGGTGGCACTGAGAGCAAAAAAGGGAG  450

seq1  GCAGGGGAGTCGAAGGTCACTAGTGTGTCACTGACCTGTTTATACATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGAGTCGAAGGTCACTAGTGTGTCACTGACCTGTTTATACATATG  500

seq1  GACCCTTTGTGGCCTTGTTTGTAGTCAAAACATTATCATAGCTGGACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTGTGGCCTTGTTTGTAGTCAAAACATTATCATAGCTGGACCCT  550

seq1  TTGAATGTCTTCAGGAATGCTGGCCTCCTGTAAGAGTAGAACTCTCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTCTTCAGGAATGCTGGCCTCCTGTAAGAGTAGAACTCTCCCTA  600

seq1  GTGAACAGGCCTGGAGCCTGCATGTTTGCCTTGCCTTGCACAGCTTTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGGCCTGGAGCCTGCATGTTTGCCTTGCCTTGCACAGCTTTCGG  650

seq1  CACAGCCCCAAGCACAGATAGGAGCATCATAAATATTACTAAATGATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCCAAGCACAGATAGGAGCATCATAAATATTACTAAATGATGAT  700

seq1  GACACCAGGGATGATTTAGTACCTCCACGTGGGTGGAGACAGACCTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGGGATGATTTAGTACCTCCACGTGGGTGGAGACAGACCTTGGG  750

seq1  CCACAAACACACTTCCAATGTGCATTGCTTCGCCAATCATCTGACCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCACAAACACACTTCCAATGTGCATTGCTTCGCCAATCATCTGACCCAG-  799

seq1  ATGTTTTCAACAACCCAGCTCATCTGTACCAAGAATGAGACACATTCAGA  850
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCA--CACCCAGCTCATCTGTACCAAGAATGAGACACATTCAGA  847

seq1  TGACAGGGTCCCCAAAGAATGCCATTTTCAAAGCTGAAAGTTTATTATCT  900
      |||||||||| ||||||||||||||||   ||||||||||||||||||||
seq2  TGACAGGGTCTCCAAAGAATGCCATTT--CAAGCTGAAAGTTTATTATCT  895

seq1  GGGGATAAATGGAATCTTTGTCTTCGTGATACTGTGAGAATGGAAGTTAA  950
      ||||   ||||||||||||||| ||||||||||||||| |||| ||||||
seq2  GGGG--TAATGGAATCTTTGTC-TCGTGATACTGTGAG-ATGG-AGTTAA  940

seq1  AGGCAATGAAAGACTTTCCCTGGGAAACACCAGTTTTATTTGTGAACAAT  1000
      |||| ||| |||||||||| |||| |||||||| |||||||||| |||  
seq2  AGGC-ATGGAAGACTTTCCTTGGG-AACACCAG-TTTATTTGTGGACA--  985

seq1  TAAAGTTTGGATAACTCGTCAGTTCCATAGGTGCCCTGCCCATTC  1045
      | ||| |||||| ||||||||||  |||||||||| || ||||||
seq2  TTAAGGTTGGAT-ACTCGTCAGT--CATAGGTGCCTTG-CCATTC  1026