BAC Information

Click to search

BAC

Clone NameB6Ng01-013E13
Chromosome19 (Build37)8 (Build37)
Map Location 16,959,926 - 16,961,021107,260,494 - 107,260,557
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013E13.bB6Ng01-013E13.g
ACCDH848143DH848144
length1,091103
definitionDH848143|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E13, 5' end.DH848144|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,959,926 - 16,961,021)(107,260,494 - 107,260,557)
sequence
gaattcaccaagaatcgtgactgtgatctcaggcaatttacaatttatac
aatgggaagatagaagtaggaatcgggagggacgtttttgttctactggc
aatttagactttgggaggaagtccaggacctaatggtgaagttccaccta
taaacaagtaatgatagacctactaagtttttatatccatcaagctgtgt
aaatccaggaggcctagagcaacttcaaggcttcttaaatggttgcattt
ccaagtgagcctataagatactgtaacaaatgttggactggattcaggag
agactattgcactcctgcaaacagtatttggcttcttggagattgggaga
gagtccctgggcagttggtgagctactcattgctctcaaaggctacttat
tgacaaatatctaagtacctacaatgtcagatttgggtgtgtgcagtata
ttgtctgtagcaggtgaattctgctcatgctggcagcatctgattgtttg
gcatggatcccaaaatgacatcctggaactgagtaggttgacctggagat
aggaggtaatgagaatgaatgatccacacagttcttagaatatagttgta
acaactgaagcacacttttcctctctctctcctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttttgttttttgttttgtttttgtttttgtttttttttgag
acagggtttctctgtatagcccttgctgtcctggaactcacttttgtaga
ccaggctggctttgaactcagaaatctgcttgcctctgcctcccaagtac
tgggattaaaggcgtgtgccaccaccgcccagctgaagcacacctttcca
aggcagaaatcaacagacacaaatagcatgtagccaactgttggccctga
gcagcaggtataaggtaagtctcaaagctcactgcctgaggcttcggtta
ggattctattttcacagggatcctactggatattcacctggaatattcat
tctcttttattctcataagaaactcaaatatgtcaagtctt
aaggccaccctgagctacatgggaagattgaaagaaagaaaggaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16959926_16961021
seq2: B6Ng01-013E13.b_44_1134

seq1  GAATTCACCAAGAATCGTGACTGTGATCTCAGGCAATTTACAATTTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGAATCGTGACTGTGATCTCAGGCAATTTACAATTTATAC  50

seq1  AATGGGAAGATAGAAGTAGGAATCGGGAGGGACGTTTTTGTTCTACTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGATAGAAGTAGGAATCGGGAGGGACGTTTTTGTTCTACTGGC  100

seq1  AATTTAGACTTTGGGAGGAAGTCCAGGACCTAATGGTGAAGTTCCACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGACTTTGGGAGGAAGTCCAGGACCTAATGGTGAAGTTCCACCTA  150

seq1  TAAACAAGTAATGATAGACCTACTAAGTTTTTATATCCATCAAGCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGTAATGATAGACCTACTAAGTTTTTATATCCATCAAGCTGTGT  200

seq1  AAATCCAGGAGGCCTAGAGCAACTTCAAGGCTTCTTAAATGGTTGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGGAGGCCTAGAGCAACTTCAAGGCTTCTTAAATGGTTGCATTT  250

seq1  CCAAGTGAGCCTATAAGATACTGTAACAAATGTTGGACTGGATTCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGAGCCTATAAGATACTGTAACAAATGTTGGACTGGATTCAGGAG  300

seq1  AGACTATTGCACTCCTGCAAACAGTATTTGGCTTCTTGGAGATTGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTGCACTCCTGCAAACAGTATTTGGCTTCTTGGAGATTGGGAGA  350

seq1  GAGTCCCTGGGCAGTTGGTGAGCTACTCATTGCTCTCAAAGGCTACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTGGGCAGTTGGTGAGCTACTCATTGCTCTCAAAGGCTACTTAT  400

seq1  TGACAAATATCTAAGTACCTACAATGTCAGATTTGGGTGTGTGCAGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATATCTAAGTACCTACAATGTCAGATTTGGGTGTGTGCAGTATA  450

seq1  TTGTCTGTAGCAGGTGAATTCTGCTCATGCTGGCAGCATCTGATTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTAGCAGGTGAATTCTGCTCATGCTGGCAGCATCTGATTGTTTG  500

seq1  GCATGGATCCCAAAATGACATCCTGGAACTGAGTAGGTTGACCTGGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGATCCCAAAATGACATCCTGGAACTGAGTAGGTTGACCTGGAGAT  550

seq1  AGGAGGTAATGAGAATGAATGATCCACACAGTTCTTAGAATATAGTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTAATGAGAATGAATGATCCACACAGTTCTTAGAATATAGTTGTA  600

seq1  ACAACTGAAGCACACTTTTCCTCTCTCTCTCCTTTCTTTCTTTCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGAAGCACACTTTTCCTCTCTCTCTCCTTTCTTTCTTTCTTTCTT  650

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  700

seq1  TTTCTTTCTTTTTGTTTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTGTTTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTGAG  750

seq1  ACAGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCAC-TTTGTAGA  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAGGGTTTCTCTGTATAGCCCTTGCTGTCCTGGAACTCACTTTTGTAGA  800

seq1  CCAGGCTGGCTTTGAACTCAGAAATCTGCTTGCCTCTGCCTCCCAAGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCTTTGAACTCAGAAATCTGCTTGCCTCTGCCTCCCAAGTAC  850

seq1  TGGGATTAAAGGCGTGTGCCACCACCGCCCAGCTGAAGCACACCTTTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGCGTGTGCCACCACCGCCCAGCTGAAGCACACCTTTCCA  900

seq1  AGGCAAGAAATCAACAGACACAAAATAGCATGTAGCCAACTGTT-GCCCT  948
      |||| |||||||||||||||| |||||||||||||||||||||| |||||
seq2  AGGC-AGAAATCAACAGACAC-AAATAGCATGTAGCCAACTGTTGGCCCT  948

seq1  GAGCAGGCAGGTATAAGGTAAGTCTCAAATGCTCAGCTGCCTGAAGTCTT  998
      ||||| ||||||||||||||||||||||| ||||| ||||||| || |||
seq2  GAGCA-GCAGGTATAAGGTAAGTCTCAAA-GCTCA-CTGCCTG-AGGCTT  994

seq1  CTGTTAGGATTCTA-TTTCACAAGGGACTCTACT-GATTATCAACTGG-A  1045
      | |||||||||||| |||||| |||||  ||||| |||  ||| |||| |
seq2  CGGTTAGGATTCTATTTTCAC-AGGGATCCTACTGGATATTCACCTGGAA  1043

seq1  TATTCATTCTCTTTTTATTTCTCAATAGAGAACTCAAAATTGTCAAGTCT  1095
      |||||||||||||||   ||||||  ||| ||||||||  ||||||||||
seq2  TATTCATTCTCTTTT--ATTCTCATAAGA-AACTCAAATATGTCAAGTCT  1090

seq1  T  1096
      |
seq2  T  1091

seq1: chr8_107260494_107260557
seq2: B6Ng01-013E13.g_112_175 (reverse)

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50

seq1  TTTCTTTCTTCCTT  64
      ||||||||||||||
seq2  TTTCTTTCTTCCTT  64