BAC Information

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BAC

Clone NameB6Ng01-014E07
Chromosome19 (Build37)
Map Location 4,789,105 - 4,790,147
singlet/doubletsinglet
Overlap geneRbm4
Upstream geneSuv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b
Downstream geneRbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014E07.bB6Ng01-014E07.g
ACCDH848861DH848862
length6351,033
definitionDH848861|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E07, 5' end.DH848862|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctattctgtgtaaactgaacagttataagtgttcattgttttaa
ggtgcatggttcagtgtgatttgttattccataataaatagctgttgtat
gatttttatgaggagtctagggtggcaccagcagcctgaaggactgaatt
taagtttatactgatgagtgagcgagtttattggggtcattaactgagct
gtagacagttaagggcaactccattttcccaagagttgctactctccgct
tatcacgattctattttatgactgtaagtctgtaggaagccgccctcaca
ttcgccgttgcaagatggcgctgacatcctgtgttctaagtggtaaacaa
ataatctgcgcatgtgccaagggtagttttccactacatgtgctctgcct
tccccgtgacgacaactcggccgatgggctgcagccaatcagggagtaat
acgtcctaggcggagaataattctccttaaaaagggacggggtttcgcca
cctttgctctcttgctcttgcgctcttgcgctctggctccttaagatgta
agcaatagagctcttgctctggctcttgcttcttgctcctaaagatgtaa
gcaataaggctcttgctctttgcgctcttgcgctc
gaattcagcagagcctccacaatgcaatgacagcagcgcaccgaacaccc
atttcaaaagaggtgaacagagagaggggcgtgaaggaggacgcagaggt
taagatcactcactggctgctcttccagagaagccaggttctaaccagca
ttcacatggcagatcacaaccacctgtaattcatttccagggtatctgac
accctcttctaacaacacacacagtgccaggcatacatgtggtacaaata
caaacatgtaggtactgattacaaaatttaaaaaaacaaaacaaacaaac
aaaaaacaaaaacaaaaaaaaaaaaacatttttttttcccccagaaaaag
gtaacaagagtcaggtagtagtgacacacgcctttaatcccagcactggg
gagacagaggcaggcatatctctgagttcaaggccagcttggtctacaga
atgagttccagggcagccaggactacaaagaaaccttgtccggggaggga
ggggcacaaaaaacagtgactagaaagatgggttttccagcagcagagaa
agtgataaaataatctctcatgctaaatcaaaactatattctaaaaatta
gaaaaggaggcagaggaacaaaacacaaaaccagtgaatctcaataaatg
taggctacagatcaaaagaagataggcaattagtatgcacaaaccataac
aactacgctggcatgtgcccaggagactactttttagtacataacaaatt
agagcaaagacatgcagccaagaaaccaacagacacatttaagacatgaa
agtatttcataaatgccctgatctaataatttgtggactctagtgtccaa
aagggaactaaatcttttataattttcttcaagtaggcaaacaaaaaaaa
tatatactagatttatataaactgaaagggaaaagatcagtcaggtaaat
aacattacttaacaaagtttattcatttattattatgattataatttatt
attaagaatgaacagattgctaggggcttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4789105_4790147
seq2: B6Ng01-014E07.g_71_1103

seq1  GAATTCAGCAGAGCCTCCACAATGCAATGACAGCAGCGCACCGAACACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAGCCTCCACAATGCAATGACAGCAGCGCACCGAACACCC  50

seq1  ATTTCAAAAGAGGTGAACAGAGAGAGGGGCGTGAAGGAGGACGCAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAAGAGGTGAACAGAGAGAGGGGCGTGAAGGAGGACGCAGAGGT  100

seq1  TAAGATCACTCACTGGCTGCTCTTCCAGAGAAGCCAGGTTCTAACCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCACTCACTGGCTGCTCTTCCAGAGAAGCCAGGTTCTAACCAGCA  150

seq1  TTCACATGGCAGATCACAACCACCTGTAATTCATTTCCAGGGTATCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGGCAGATCACAACCACCTGTAATTCATTTCCAGGGTATCTGAC  200

seq1  ACCCTCTTCTAACAACACACACAGTGCCAGGCATACATGTGGTACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTCTAACAACACACACAGTGCCAGGCATACATGTGGTACAAATA  250

seq1  CAAACATGTAGGTACTGATTACAAAATTTAAAAAAACAAAACAAACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTAGGTACTGATTACAAAATTTAAAAAAACAAAACAAACAAAC  300

seq1  AAAAAACAAAAACAAAAAAAAAAAAACATTTTTTTTTCCCCCAGAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAACAAAAAAAAAAAAACATTTTTTTTTCCCCCAGAAAAAG  350

seq1  GTAACAAGAGTCAGGTAGTAGTGACACACGCCTTTAATCCCAGCACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGAGTCAGGTAGTAGTGACACACGCCTTTAATCCCAGCACTGGG  400

seq1  GAGACAGAGGCAGGCATATCTCTGAGTTCAAGGCCAGCTTGGTCTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGGCAGGCATATCTCTGAGTTCAAGGCCAGCTTGGTCTACAGA  450

seq1  ATGAGTTCCAGGGCAGCCAGGACTACAAAGAAACCTTGTCCGGGGAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCCAGGGCAGCCAGGACTACAAAGAAACCTTGTCCGGGGAGGGA  500

seq1  GGGGCACAAAAAACAGTGACTAGAAAGATGGGTTTTCCAGCAGCAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACAAAAAACAGTGACTAGAAAGATGGGTTTTCCAGCAGCAGAGAA  550

seq1  AGTGATAAAATAATCTCTCATGCTAAATCAAAACTATATTCTAAAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAAATAATCTCTCATGCTAAATCAAAACTATATTCTAAAAATTA  600

seq1  GAAAAGGAGGCAGAGGAACAAAACACAAAACCAGTGAATCTCAATAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGGCAGAGGAACAAAACACAAAACCAGTGAATCTCAATAAATG  650

seq1  TAGGCTACAGATCAAAAGAAGATAGGCAATTAGTATGCACAAACCATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTACAGATCAAAAGAAGATAGGCAATTAGTATGCACAAACCATAAC  700

seq1  AACTACGCTGGCATGTGCCCAGGAGACTACTTTTTAGTACATAACAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACGCTGGCATGTGCCCAGGAGACTACTTTTTAGTACATAACAAATT  750

seq1  AGAGCAAAGACATGCAGCCAAGAAACCAACAGACACATTTAAGACATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGACATGCAGCCAAGAAACCAACAGACACATTTAAGACATGAA  800

seq1  AGTATTTCATAAATGCCCTGATCTAATAATTTGTGGACTCTAGTGTCCAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTATTTCATAAATGCCCTGATCTAATAATTTGTGGACTCTAGTGTCC-A  849

seq1  AAAGGGAACTAAATCTTTTATAATTTTCTTCAAGTAGGCAAACAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGGGAACTAAATCTTTTATAATTTTCTTCAAGTAGGCAAAC-AAAAAA  898

seq1  AATATATACTAGATTATAATAAACTGAAAGGGAAAAGATCAGTCAGGTAA  950
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  AATATATACTAGATTTATATAAACTGAAAGGGAAAAGATCAGTCAGGTAA  948

seq1  ATAACATTACTTACACAAAGTTTTAATCATTTAATTATTAATGATTATAA  1000
      ||||||||||||| |||||| |||| |||||| |||||| ||||||||||
seq2  ATAACATTACTTA-ACAAAG-TTTATTCATTT-ATTATT-ATGATTATAA  994

seq1  TTTAATTATTAAGAAATGAAACAGGAATGCTAGGGGCTTGGGG  1043
      ||| ||||||||| |||| |||| || ||||||||||||||||
seq2  TTT-ATTATTAAG-AATG-AACA-GATTGCTAGGGGCTTGGGG  1033