BAC Information

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BAC

Clone NameB6Ng01-015F10
Chromosome19 (Build37)2 (Build37)
Map Location 16,991,868 - 16,992,0773,952,121 - 3,953,051
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015F10.bB6Ng01-015F10.g
ACCDH849628DH849629
length714933
definitionDH849628|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F10, 5' end.DH849629|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,991,868 - 16,992,077)(3,952,121 - 3,953,051)
sequence
gaattcaaccactgggctcagcagcttctgtccattggttgggtgcaaat
atctgcatctgactctttcagctgcttgttgagtcttttggagggcactc
atgacaggtcccctttgtgagctttccatagcctcagtaatagtgtcagg
ccttggaacctctccttgagctggacctctctccctcactttgggcctgt
cgctggaccttcttttcctcaggcccctcaactatgggtcagagttttga
cttgggctggcaacccaatccctcacttggtgccttgtgctcctgctgga
gctgggctctacaagttccctcttcccaatgtagggcatttcatctaaga
ttcctccctttgagcccggagagtctctcacctcccaggtctctggtgca
ttctggaaggtccccacaacctcctacctcccaaggttacctgtttccta
tctttctcctggccctcgggacttcagtccttttcccctacccaatccct
tactacatcacattcccctcttctcccctctcccatccactttccctccc
aagttcctcccttcatccccacttgtgattgctttcttctcccacccatg
tgggactgagacatcctcacttgggcacttcagcttgtttgacctttttg
attctgtggactgtatcttggatattctgtttctctctctctctctctct
ctctctctctctct
gaattcattgcttctactctctccctccttaggtttgaatgaggaagcct
acagatcagacactgtaagaggtggaatctgtgaggaaagtcagcaggga
ggcaaggctcacgagcaagagtagaacctaaatacttaaggggagtgagg
gtaagtatggagccagatccagagtctggccatagcttcaccttataacc
caatgtgtgaaccaaaagactctcttgtgttatgactagagacatggccc
agtgggtaaaagtgttgactctgcaagcctggtgatcccatatctctaga
agtcacatagaaagctagatgtggtaatgcacatctgtaatcctagcacc
actatggggaagacagtggcagtgacaaaattctcagctctcaggccagc
tggcctgtggtatagggtgcagtggcagaaacaaggagagggaccctgcc
tcaacaaggaagaactgattcccaaaagttgtcttttgaccctttacatg
ggcaccatggcaagtacatgcgtgtgtgcatatgcacacacacacacatg
caaatcatatgcatgcacacacacatgcacacacagaagattttaagaac
tttaatttaaagccccttgaacaagtgttcattttttaatttacttgtca
atgggagccactgggaagatctctgtttcccaccgtgtctcctcccacaa
tgcattggttcctctattcatgatgcccattgtacttctcaattgtctgc
cttttacttgagttccctgtccgagggtccacttgcttcttttaaaccca
tttccatgtggcctcctttattaaatatgtatcttgtgctgtgaacaaac
acctttacaagatgcatcataagggaggagagtttccccctggcttacag
ttttaaggatacaatccattcgtactgtaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16991868_16992077
seq2: B6Ng01-015F10.b_721_760 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||| | |||           
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAA----------  40

seq1  AGAGAGAGAGTGAGTTTTGGTCTATGGCTTTAGAGGTTCTAGAGCAGGTA  100
                                                        
seq2  --------------------------------------------------  40

seq1  GGTAGGTAGCTCCATTGCTGTGGGCTTCTAACAAGCAACAAACAGGTAGG  150
                                                        
seq2  --------------------------------------------------  40

seq1  AGGTATATTGAAAAGCTGTCCACTTCATGAGCCAGGGAGCAATGAGAGAG  200
                                                        
seq2  --------------------------------------------------  40

seq1  AGAAACAGAA  210
                
seq2  ----------  40

seq1: chr2_3952121_3953051
seq2: B6Ng01-015F10.g_69_1001 (reverse)

seq1  GCTTTCCCAGTACG-ATGGATTGTATGCCTTAAAACTGTAAGCCAGGGGG  49
      |||||  ||||||| ||||||||||| |||||||||||||||||||||||
seq2  GCTTT-ACAGTACGAATGGATTGTAT-CCTTAAAACTGTAAGCCAGGGGG  48

seq1  AAACCTCTCCTCCCTTATGCTGCATCTTGT-AAGGTGTTTGTTCACAGCA  98
      ||| ||||||||||||||| |||||||||| |||||||||||||||||| 
seq2  AAA-CTCTCCTCCCTTATGATGCATCTTGTAAAGGTGTTTGTTCACAGC-  96

seq1  ACAAGAAACATATTTAATAAAGGAGGCCACATGGAAATGGG-TTAAAAGA  147
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAAGATACATATTTAATAAAGGAGGCCACATGGAAATGGGTTTAAAAGA  146

seq1  AGC-AGTGGACCCTCGGACAGGGAACTCAAGTAAAAGGCAGACAATTGAG  196
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGGACCCTCGGACAGGGAACTCAAGTAAAAGGCAGACAATTGAG  196

seq1  AAGTACAATGGGCATCATGAATAGAGGAACCAATGCATTGTGGGAGGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAATGGGCATCATGAATAGAGGAACCAATGCATTGTGGGAGGAGA  246

seq1  CACGGTGGGAAACAGAGATCTTCCCAGTGGCTCCCATTGACAAGTAAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGGGAAACAGAGATCTTCCCAGTGGCTCCCATTGACAAGTAAATT  296

seq1  -AAAAATGAACACTTGTTCAAGGGGCTTTAAATTAAAGTTCTTAAAATCT  345
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAACACTTGTTCAAGGGGCTTTAAATTAAAGTTCTTAAAATCT  346

seq1  TCTGTGTGTGCATGTGTGTGTGCATGCATATGA-TTGCATGTGTGTGTGT  394
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTGTGTGTGCATGTGTGTGTGCATGCATATGATTTGCATGTGTGTGTGT  396

seq1  GTGCATATGCACACACGCATGTACTTGCCATGGTGCCCATGTAAAGGGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATGCACACACGCATGTACTTGCCATGGTGCCCATGTAAAGGGTC  446

seq1  AAAAGACAACTTTTGGGAATCAGTTCTTCCTTGTTGAGGCAGGGTCCCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAACTTTTGGGAATCAGTTCTTCCTTGTTGAGGCAGGGTCCCTC  496

seq1  TCCTTGTTTCTGCCACTGCACCCTATACCACAGGCCAGCTGGCCTGAGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTTCTGCCACTGCACCCTATACCACAGGCCAGCTGGCCTGAGAG  546

seq1  CTGAGAATTTTGTCACTGCCACTGTCTTCCCCATAGTGGTGCTAGGATTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTTTGTCACTGCCACTGTCTTCCCCATAGTGGTGCTAGGATTA  596

seq1  CAGATGTGCATTACCACATCTAGCTTTCTATGTGACTTCTAGAGATATGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGCATTACCACATCTAGCTTTCTATGTGACTTCTAGAGATATGG  646

seq1  GATCACCAGGCTTGCAGAGTCAACACTTTTACCCACTGGGCCATGTCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCAGGCTTGCAGAGTCAACACTTTTACCCACTGGGCCATGTCTCT  696

seq1  AGTCATAACACAAGAGAGTCTTTTGGTTCACACATTGGGTTATAAGGTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAACACAAGAGAGTCTTTTGGTTCACACATTGGGTTATAAGGTGA  746

seq1  AGCTATGGCCAGACTCTGGATCTGGCTCCATACTTACCCTCACTCCCCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGCCAGACTCTGGATCTGGCTCCATACTTACCCTCACTCCCCTT  796

seq1  AAGTATTTAGGTTCTACTCTTGCTCGTGAGCCTTGCCTCCCTGCTGACTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAGGTTCTACTCTTGCTCGTGAGCCTTGCCTCCCTGCTGACTT  846

seq1  TCCTCACAGATTCCACCTCTTACAGTGTCTGATCTGTAGGCTTCCTCATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGATTCCACCTCTTACAGTGTCTGATCTGTAGGCTTCCTCATT  896

seq1  CAAACCTAAGGAGGGAGAGAGTAGAAGCAATGAATTC  931
      |||||||||||||||||||||||||||||||||||||
seq2  CAAACCTAAGGAGGGAGAGAGTAGAAGCAATGAATTC  933