BAC Information

Click to search

BAC

Clone NameB6Ng01-015F23
Chromosome16 (Build37)19 (Build37)
Map Location 78,527,794 - 78,528,8698,166,288 - 8,166,901
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
Downstream geneD16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015F23.bB6Ng01-015F23.g
ACCDH849647DH849648
length1,0621,001
definitionDH849647|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F23, 5' end.DH849648|Mus musculus domesticus DNA, BAC clone: B6Ng01-015F23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,527,794 - 78,528,869)(8,166,288 - 8,166,901)
sequence
gaattctggtagtgttcccgtagtcccagcactggggatgcagagacagc
aagattcctggagcatgctggccatagatctcaactagcaacttggtgag
ttccaggctcagtgagggattctgtctcaaaaatataacgtggggtagtg
aactgcaaagatagccagtgtagaccatggcctacatatataaatgcaca
catatgcacatgagtgatgtgcccacatacactctctaaacacacagaaa
ataagcccatgtacaatcacaacagaaaccaaaacaaaataaaaagcaga
aagtaaggtaagacttaagctctaggtattactcgttggtttgttttgaa
gtcagtttccctggctctcagtggaaaggcatacaggggaatcatgtatg
tgggcattcccattatgtgtcatctatttagacaggtaagtgtttacctc
attattttcattctagacacataggttcattttagttctccttatgggtt
aagatgctcaaattctgttatccttaatatattttcttcttggtcagctt
cttctatccaatccatcgtcctttggctcccctgtctcttctgtatatgc
ttgctggggcactgacttcctactgacaggccccacctctctctgctgct
gctctccctcatgggtaccctccttatcaaagtctagagttggcagtctg
tgtcaaggcatcccaggtaagacctcctgtttgcaccagacctgacagcc
tttcacctctccaagcctctgtggacacctaccttacagtaaagagcagc
tctagaactgaatagggtccacaaacaaagacagaagtcccaggaacata
tgggggatttctcgggtatttttctggtactatctctagtattttactgt
taggtgacagatcggaaccctcagagatgggatcaaacacaggtcactac
agatgaagattctgctcagcagaacggttggtctcttctggcttagcagt
caggaagctaggagagggtatgggatggaggccctcactacttctaatgg
catcaggtagtg
gaattcctttagctatatcctcacaatatcaaatatctgtagagactgag
aaatgctaaataaataagacaaaataaaacagtggacaaaatatccacca
tgaaatctcagaaacatgaacatctcctatgtgaatccggtattcctatc
gttttaattttttttctaagttgctggttcttattctttcaggaggagaa
gttttagccttttctactgaactgaacggaaagaaatattctggtgttat
ttgctaataacaatagtagtagttaatgatctcatcttgactggtttttt
gctttgttttgtttttgcatttggattttttttcatgtgttataattttt
tttcttttttatttttattaggtattttcctcatttacatttccaatgct
atcccaaaagtcccccatacccatccccccactcccctacccacgcactc
cccctttttggccctggcattcccctgtactggggcatataatgtttgca
agtccaaagggcctctctttccagtgatggccgactaggccatcttttga
tacatatgcagctagagacaagagctccagggtactggttagttcatatt
gttgttccacctatagggttgcaattccctttagttccttgggtgctttc
tctagctcttccattgggggccctgtgatccattcaatagctgactgtga
gcatccacttctgtgtttgctaggccccagcatagtctcacaagagacag
ctatatctgggtcctttcagcaaaatcttgctagtgtatgcaatggtgtc
agcatttggaagctgattatgggatggatccctgcatatggcaatcacta
gatggtccatcctttcatcacagctccaatttgtctctgtaactccttcc
atggtgttttgttcccatttctaagaaagggtaaagtgtccacacttggt
cttcgttctcttgaatttcatgcgtttggcaagtgtatcttatatctgga
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78527794_78528869
seq2: B6Ng01-015F23.b_45_1106

seq1  GAATTCTGGTAGTGTTCCCGTAGTCCCAGCACTGGGGATGCAGAGACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTAGTGTTCCCGTAGTCCCAGCACTGGGGATGCAGAGACAGC  50

seq1  AAGATTCCTGGAGCATGCTGGCCATAGATCTCAACTAGCAACTTGGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCCTGGAGCATGCTGGCCATAGATCTCAACTAGCAACTTGGTGAG  100

seq1  TTCCAGGCTCAGTGAGGGATTCTGTCTCAAAAATATAACGTGGGGTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCTCAGTGAGGGATTCTGTCTCAAAAATATAACGTGGGGTAGTG  150

seq1  AACTGCAAAGATAGCCAGTGTAGACCATGGCCTACATATATAAATGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAAGATAGCCAGTGTAGACCATGGCCTACATATATAAATGCACA  200

seq1  CATATGCACATGAGTGATGTGCCCACATACACTCTCTAAACACACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCACATGAGTGATGTGCCCACATACACTCTCTAAACACACAGAAA  250

seq1  ATAAGCCCATGTACAATCACAACAGAAACCAAAACAAAATAAAAAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCCATGTACAATCACAACAGAAACCAAAACAAAATAAAAAGCAGA  300

seq1  AAGTAAGGTAAGACTTAAGCTCTAGGTATTACTCGTTGGTTTGTTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGTAAGACTTAAGCTCTAGGTATTACTCGTTGGTTTGTTTTGAA  350

seq1  GTCAGTTTCCCTGGCTCTCAGTGGAAAGGCATACAGGGGAATCATGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTCCCTGGCTCTCAGTGGAAAGGCATACAGGGGAATCATGTATG  400

seq1  TGGGCATTCCCATTATGTGTCATCTATTTAGACAGGTAAGTGTTTACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTCCCATTATGTGTCATCTATTTAGACAGGTAAGTGTTTACCTC  450

seq1  ATTATTTTCATTCTAGACACATAGGTTCATTTTAGTTCTCCTTATGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCATTCTAGACACATAGGTTCATTTTAGTTCTCCTTATGGGTT  500

seq1  AAGATGCTCAAATTCTGTTATCCTTAATATATTTTCTTCTTGGTCAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTCAAATTCTGTTATCCTTAATATATTTTCTTCTTGGTCAGCTT  550

seq1  CTTCTATCCAATCCATCGTCCTTTGGCTCCCCTGTCTCTTCTGTATATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCCAATCCATCGTCCTTTGGCTCCCCTGTCTCTTCTGTATATGC  600

seq1  TTGCTGGGGCACTGACTTCCTACTGACAGGCCCCACCTCTCTCTGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGGCACTGACTTCCTACTGACAGGCCCCACCTCTCTCTGCTGCT  650

seq1  GCTCTCCCTCATGGGTACCCTCCTTATCAAAGTCTAGAGTTGGCAGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTCATGGGTACCCTCCTTATCAAAGTCTAGAGTTGGCAGTCTG  700

seq1  TGTCAAGGCATCCCAGGTAAGACCTCCTGTTTGCACCAGACCTGACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGGCATCCCAGGTAAGACCTCCTGTTTGCACCAGACCTGACAGCC  750

seq1  TTTCACCTCTCCAAGCCTCTGTGGACACCTACCTTACAGTAAAGAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTCTCCAAGCCTCTGTGGACACCTACCTTACAGTAAAGAGCAGC  800

seq1  TCTAGAACTGAATA-GGTCCACAAACAAAGACAGAAGTCCCAGGACCATA  849
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TCTAGAACTGAATAGGGTCCACAAACAAAGACAGAAGTCCCAGGAACATA  850

seq1  TGGGGGATTTCTTCGGGTATTTTTCTGATACTATCTCTAGTATTTTTACT  899
      ||||||||||| ||||||||||||||| |||||||||||||| |||||||
seq2  TGGGGGATTTC-TCGGGTATTTTTCTGGTACTATCTCTAGTA-TTTTACT  898

seq1  GTTAGGTTGACAGATCGGAACCCTCAGAGATGGGATCAAACCACAGGTCA  949
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTAGG-TGACAGATCGGAACCCTCAGAGATGGGATCAAA-CACAGGTCA  946

seq1  CTTACAGATGAGAATTCTTGCTCAGCAGAACGGTTTGTTCTCTTTCTGTC  999
      | |||||||||  |||| ||||||||||||||| ||| |||| ||||| |
seq2  C-TACAGATGAAGATTC-TGCTCAGCAGAACGG-TTGGTCTC-TTCTGGC  992

seq1  CTTTAGCAGTCCAGGAAAGCTAGGAGAGGGTAATTGGAT-GAAGCCTCCA  1048
        |||||||| |||| ||||||||||||||| || |||| || |||  ||
seq2  --TTAGCAGT-CAGG-AAGCTAGGAGAGGGT-ATGGGATGGAGGCCCTCA  1037

seq1  CTTACTTCTAATTGGCATCAGGTTAGTG  1076
      | ||||||||| |||||||||| |||||
seq2  C-TACTTCTAA-TGGCATCAGG-TAGTG  1062

seq1: chr19_8166288_8166901
seq2: B6Ng01-015F23.g_566_1066 (reverse)

seq1  ATCCAAGATATAAGATATAATTTGCTAAACACATTTAACTCAAGAGAACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAAACAC  100
                                                      | 
seq2  ------------------------------------------------AT  2

seq1  CCATGGAAGGAGTTACAGAGACAAAATTTGGAAGTGAATCCATGAAACTC  150
      |||      ||  || ||| ||   | |||  |   ||  ||||||| ||
seq2  CCA------GATATA-AGATAC---ACTTGCCA---AACGCATGAAATTC  39

seq1  A--AGAAGGAAGACCCAAGTGTGGACTCTTTGCCCCTTCTTAGAATTGGG  198
      |  |||| ||||| |||||||||||| |||| ||| ||||||||| ||||
seq2  AAGAGAACGAAGA-CCAAGTGTGGACACTTTACCCTTTCTTAGAAATGGG  88

seq1  AACAAGACATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGAC  248
      ||||| ||| |||||||||||||||||||||||||  ||||||||| || 
seq2  AACAAAACA-CCATGGAAGGAGTTACAGAGACAAA--TTGGAGCTGTGAT  135

seq1  AAAAGGATGGACCATCTATTGATTGCCATATCCAGAGATACATCCCATGA  298
       ||||||||||||||||| |||||||||||| ||| ||| |||||||| |
seq2  GAAAGGATGGACCATCTAGTGATTGCCATATGCAGGGATCCATCCCATAA  185

seq1  TCACCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGA  348
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGATTTTGCTGA  235

seq1  AAGGACCCAGATATAGCTGTCTCTTGTAAGACTATGCCAGAGCCTAGCAA  398
      ||||||||||||||||||||||||||| |||||||||  | |||||||||
seq2  AAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAA  285

seq1  ACACAGAAGTGGATGCTCACAGTCAGCTGTTGAATGCACCACAGGGCCCC  448
      |||||||||||||||||||||||||||| ||||||| | |||||||||||
seq2  ACACAGAAGTGGATGCTCACAGTCAGCTATTGAATGGATCACAGGGCCCC  335

seq1  CAATGGAGGAATTAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACC  498
      ||||||| ||  |||||||||||||||||||||||||||||| |||||||
seq2  CAATGGAAGAGCTAGAGAAAGCACCCAAGGAACTAAAGGGAATTGCAACC  385

seq1  CTATAGGTGGAACAACAATATGAACTAAGTAGTACCCCGGAGCTCTTGTC  548
      ||||||||||||||||||||||||||||  ||||||| ||||||||||||
seq2  CTATAGGTGGAACAACAATATGAACTAACCAGTACCCTGGAGCTCTTGTC  435

seq1  TCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGAAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAG  485

seq1  AGAGGCCCATTGGACT  614
      |||||||| |||||||
seq2  AGAGGCCCTTTGGACT  501