BAC Information

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BAC

Clone NameB6Ng01-016A14
Chromosome19 (Build37)
Map Location 10,915,591 - 11,076,167
singlet/doubletdoublet
Overlap geneSlc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik
Upstream geneLOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6
Downstream geneAW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016A14.bB6Ng01-016A14.g
ACCDH850128DH850129
length1,1931,178
definitionDH850128|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A14, 5' end.DH850129|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,074,978 - 11,076,167)(10,915,591 - 10,916,779)
sequence
gaattccatcctaatatgatccataaaatacataacatccatcaaaaccc
tgcaactgctaaaaacagccacaatgtttctataccacagtgaggactca
gattaagagagaaatggtctaggaggggtagagatatggctacttgtctc
aagctgcaacctgatcccccttcagaactaatgaagtagactaaggaagc
ctggcagagcagaggcccatctacagaggtgaggaaaatcctcaaagaga
gagcttccctgtagaccccagaagaagccgaatccagttgacagaacttg
gccttggtaggacatggcaggaaaccaggcaaggtttttgacctctggag
tccagccctaggcaacaggataagcttattaaaaaggtaaactgtgattt
atgaagaattaagattgatcttatcaattagtctgaatattggctgtatg
acaataggcacctctgtcaccaaagagtgtatatactagtgtcaggcaga
acaaaagcttagggttccagttgatctgatgctaaaccctggagacccat
cctctgctgaagaggaaaattggagaggaagtactcctaaaccctgcctc
tgcaatgcactgtggacagggccacagcccaatgcacaccaagctcagtc
ctgccctcaaagctctgattcagacaaaaccatagggatcatgcaagcta
agacagccaggagccaggcagagttgacagttctgacctcactggtacat
ctcccaactgacagtaaggaccccaggccccccatgtaggttcatggtca
gagcacctgttggggtccatcacagttagggattgtctcagaaagcaaac
aagtagttcttgtggagagaggaagtaagtaagacctcggggcaaggaat
tttacacacacacagctacaggtcatcagtgaaagactgatatgccagag
gattgtttgagcttccggctttgtggtacaaaagagcaaagtgggctctg
gtggtcataaaagtccacaataaagaaatacagtggctgacaggtggggt
atactgaatgtatatggcaaagtaacaacagcatcacaccaatacaccaa
ccaccagaggccgtctctctctaagtcttccagaatgagcacgtgcagtg
ccttagaaccgctacatggtgtgggaccgtcattcagtcaacc
gaattcagttcaattcccagcagccatatgacagttcacagctatctgta
actccagttccaggggatctgcaaccctcacacagacatacatgcaggca
aaacactaatacacataaaataaaaataaaaaataaatatatatgcaaat
aaaataataaaaattacacatacacgtttaaaacccatgtgtttgatggt
gactctggctttttagcaaaggtgtttattttagtttttagctttctgat
gttgttcttgctgctgcttaaaccactctcattctctgtcatttattcaa
ccaatatttaatgaatggctgccattgctaagcactgggaagtactagga
atgttctcaaatgtgcctgcctcaatagtgagccctttcccaccatgggg
tagagcataaaacagtaactaagccaccaaggttgagctgagatagtgtg
acctgctgcgtgtgatggtgaaaatccaactgggcagttgctaacctcag
agcatctgggaaggcccctgggagagagatctttccacctaaataaagag
aaagtagcctcacgaagggcttgaggaagagcctgtctggacaagagaca
gcagagcaagtcactgagccagcctgggaggcgagcagaaagatcagcag
accacactaagtgggttgcgatgaggtcagcgccctttaaacatttaggt
caagaagtggctgactcttctttattttcctgtagggcaccaggggatct
gagtaaggggtggctgtgatttagtctgaggtcagtgcccctgtcaatct
tgtggctcccatatggcgccacttccttcccctctactgcttttgcaatg
caacgttcatgtcagcacttcttttgacataggctgttgtgggccctgag
gctcagataccaggatccagtcactctcacctcctttccccacccctact
gggctttgtctctgcatctgtgagggacacttgggcctaccaaatgctca
tgtggccttcacagatccatggactggtctcagcgtcaccaccccatgta
gtgctgaaggagcttgaactcctccacagtggctccctgggcagagaatg
cctctcaaggactgcctgcccatcaaagtcccagctacggagacgatcaa
ctcgagcggaaaagagtgtcttagggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11074978_11076167
seq2: B6Ng01-016A14.b_38_1230 (reverse)

seq1  GGTTGACTGGATGACAGT-CCACA-CATGTAGCCGTTCTAAAGCAACTGC  48
      ||||||||| ||||| || ||||| |||||||| ||||||| || |||| 
seq2  GGTTGACTGAATGACGGTCCCACACCATGTAGCGGTTCTAAGGC-ACTG-  48

seq1  CACGTGCCTCA-TCTGGAAGACT---AGAGAGACGGCTTCT-GTGTGTGG  93
      |||||| |||| |||||||||||   ||||||||||| ||| |||  |||
seq2  CACGTG-CTCATTCTGGAAGACTTAGAGAGAGACGGCCTCTGGTGGTTGG  97

seq1  TGTATTGGTGTTGATGCTGTTGTTAACTTTGCCATATACATTCAGTATAC  143
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TGTATTGGTG-TGATGCTGTTGTT-ACTTTGCCATATACATTCAGTATAC  145

seq1  CCCACCCTGTCAGCCACTGTATTTCTTTATTGTGGACTTTTATGACCACC  193
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCA-CCTGTCAGCCACTGTATTTCTTTATTGTGGACTTTTATGACCACC  194

seq1  AGAGCCCACTTTGCTC-TTTGTACCACAAAGCCGGAAGCTCAAACAATCC  242
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGCCCACTTTGCTCTTTTGTACCACAAAGCCGGAAGCTCAAACAATCC  244

seq1  TCTGGCATATCAGTCTTTCACTGATGACCTGTAGCTGTGTGTGTGTAAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATATCAGTCTTTCACTGATGACCTGTAGCTGTGTGTGTGTAAAA  294

seq1  TTCCTTGCCCCGAGGTCTTACTTACTTCCTCTCTCCACAAGAACTACTTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCCCCGAGGTCTTACTTACTTCCTCTCTCCACAAGAACTACTTG  344

seq1  TTTGC-TTCTGAGACAATCCCTAACTGTGATGGACCCCAACAGGTGCTCT  391
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCTGAGACAATCCCTAACTGTGATGGACCCCAACAGGTGCTCT  394

seq1  GACCATGAACCTACATGGGGGGCCTGGGGTCCTTACTGTCAGTTGGGAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAACCTACATGGGGGGCCTGGGGTCCTTACTGTCAGTTGGGAGA  444

seq1  TGTACCAGTGAGGTCAGAACTGTCAACTCTGCCTGGCTCCTGGCTGTCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGTGAGGTCAGAACTGTCAACTCTGCCTGGCTCCTGGCTGTCTT  494

seq1  AGCTTGCATGATCCCTATGGTTTTGTCTGAATCAGAGCTTTGAGGGCAGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCATGATCCCTATGGTTTTGTCTGAATCAGAGCTTTGAGGGCAGG  544

seq1  ACTGAGCTTGGTGTGCATTGGGCTGTGGCCCTGTCCACAGTGCATTGCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTTGGTGTGCATTGGGCTGTGGCCCTGTCCACAGTGCATTGCAG  594

seq1  AGGCAGGGTTTAGGAGTACTTCCTCTCCAATTTTCCTCTTCAGCAGAGGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGTTTAGGAGTACTTCCTCTCCAATTTTCCTCTTCAGCAGAGGA  644

seq1  TGGGTCTCCAGGGTTTAGCATCAGATCAACTGGAACCCTAAGCTTTTGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCAGGGTTTAGCATCAGATCAACTGGAACCCTAAGCTTTTGTT  694

seq1  CTGCCTGACACTAGTATATACACTCTTTGGTGACAGAGGTGCCTATTGTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGACACTAGTATATACACTCTTTGGTGACAGAGGTGCCTATTGTC  744

seq1  ATACAGCCAATATTCAGACTAATTGATAAGATCAATCTTAATTCTTCATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCAATATTCAGACTAATTGATAAGATCAATCTTAATTCTTCATA  794

seq1  AATCACAGTTTACCTTTTTAATAAGCTTATCCTGTTGCCTAGGGCTGGAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTTTACCTTTTTAATAAGCTTATCCTGTTGCCTAGGGCTGGAC  844

seq1  TCCAGAGGTCAAAAACCTTGCCTGGTTTCCTGCCATGTCCTACCAAGGCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCAAAAACCTTGCCTGGTTTCCTGCCATGTCCTACCAAGGCC  894

seq1  AAGTTCTGTCAACTGGATTCGGCTTCTTCTGGGGTCTACAGGGAAGCTCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGTCAACTGGATTCGGCTTCTTCTGGGGTCTACAGGGAAGCTCT  944

seq1  CTCTTTGAGGATTTTCCTCACCTCTGTAGATGGGCCTCTGCTCTGCCAGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAGGATTTTCCTCACCTCTGTAGATGGGCCTCTGCTCTGCCAGG  994

seq1  CTTCCTTAGTCTACTTCATTAGTTCTGAAGGGGGATCAGGTTGCAGCTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAGTCTACTTCATTAGTTCTGAAGGGGGATCAGGTTGCAGCTTG  1044

seq1  AGACAAGTAGCCATATCTCTACCCCTCCTAGACCATTTCTCTCTTAATCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTAGCCATATCTCTACCCCTCCTAGACCATTTCTCTCTTAATCT  1094

seq1  GAGTCCTCACTGTGGTATAGAAACATTGTGGCTGTTTTTAGCAGTTGCAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCACTGTGGTATAGAAACATTGTGGCTGTTTTTAGCAGTTGCAG  1144

seq1  GGTTTTGATGGATGTTATGTATTTTATGGATCATATTAGGATGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGATGGATGTTATGTATTTTATGGATCATATTAGGATGGAATTC  1193

seq1: chr19_10915591_10916779
seq2: B6Ng01-016A14.g_68_1245

seq1  GAATTCAGTTCAATTCCCAGCAGCCATATGACAGTTCACAGCTATCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAATTCCCAGCAGCCATATGACAGTTCACAGCTATCTGTA  50

seq1  ACTCCAGTTCCAGGGGATCTGCAACCCTCACACAGACATACATGCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTTCCAGGGGATCTGCAACCCTCACACAGACATACATGCAGGCA  100

seq1  AAACACTAATACACATAAAATAAAAATAAAAAATAAATATATATGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTAATACACATAAAATAAAAATAAAAAATAAATATATATGCAAAT  150

seq1  AAAATAATAAAAATTACACATACACGTTTAAAACCCATGTGTTTGATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAAAATTACACATACACGTTTAAAACCCATGTGTTTGATGGT  200

seq1  GACTCTGGCTTTTTAGCAAAGGTGTTTATTTTAGTTTTTAGCTTTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGCTTTTTAGCAAAGGTGTTTATTTTAGTTTTTAGCTTTCTGAT  250

seq1  GTTGTTCTTGCTGCTGCTTAAACCACTCTCATTCTCTGTCATTTATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTTGCTGCTGCTTAAACCACTCTCATTCTCTGTCATTTATTCAA  300

seq1  CCAATATTTAATGAATGGCTGCCATTGCTAAGCACTGGGAAGTACTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTTAATGAATGGCTGCCATTGCTAAGCACTGGGAAGTACTAGGA  350

seq1  ATGTTCTCAAATGTGCCTGCCTCAATAGTGAGCCCTTTCCCACCATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCAAATGTGCCTGCCTCAATAGTGAGCCCTTTCCCACCATGGGG  400

seq1  TAGAGCATAAAACAGTAACTAAGCCACCAAGGTTGAGCTGAGATAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCATAAAACAGTAACTAAGCCACCAAGGTTGAGCTGAGATAGTGTG  450

seq1  ACCTGCTGCGTGTGATGGTGAAAATCCAACTGGGCAGTTGCTAACCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGCGTGTGATGGTGAAAATCCAACTGGGCAGTTGCTAACCTCAG  500

seq1  AGCATCTGGGAAGGCCCCTGGGAGAGAGATCTTTCCACCTAAATAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGGGAAGGCCCCTGGGAGAGAGATCTTTCCACCTAAATAAAGAG  550

seq1  AAAGTAGCCTCACGAAGGGCTTGAGGAAGAGCCTGTCTGGACAAGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGCCTCACGAAGGGCTTGAGGAAGAGCCTGTCTGGACAAGAGACA  600

seq1  GCAGAGCAAGTCACTGAGCCAGCCTGGGAGGCGAGCAGAAAGATCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAAGTCACTGAGCCAGCCTGGGAGGCGAGCAGAAAGATCAGCAG  650

seq1  ACCACACTAAGTGGGTTGCGATGAGGTCAGCGCCCTTTAAACATTTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTAAGTGGGTTGCGATGAGGTCAGCGCCCTTTAAACATTTAGGT  700

seq1  CAAGAAGTGGCTGACTCTTCTTTATTTTCCTGTAGGGCACCAGGGGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTGGCTGACTCTTCTTTATTTTCCTGTAGGGCACCAGGGGATCT  750

seq1  GAGTAAGGGGTGGCTGTGATTTAGTCTGAGGTCAGTGCCCCTGTCAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGGGTGGCTGTGATTTAGTCTGAGGTCAGTGCCCCTGTCAATCT  800

seq1  TGTGGCTCCCATATGGCGCCACTTCCTTCCCCTCTACTGCTTTTGCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCCCATATGGCGCCACTTCCTTCCCCTCTACTGCTTTTGCAATG  850

seq1  CAACGTTCATGTCAGCACTTCTTTTGACATAGGCTGTTGTGGGCCCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTCATGTCAGCACTTCTTTTGACATAGGCTGTTGTGGGCCCTGAG  900

seq1  GCTCAGATACCAGGATCCAGTCACTTCTCACCTCCTTTCCCCACCCCTAC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTCAGATACCAGGATCCAGTCAC-TCTCACCTCCTTTCCCCACCCCTAC  949

seq1  TGGGCTTTGTCTCTGCATCTGTGAAGGGACACCTGGGCCTACCAAATGCT  1000
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  TGGGCTTTGTCTCTGCATCTGTG-AGGGACACTTGGGCCTACCAAATGCT  998

seq1  CCATGTGGCCTTCACAGATCCAATGGACTGGTCTCAGCGTCACCACCCCA  1050
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -CATGTGGCCTTCACAGATCC-ATGGACTGGTCTCAGCGTCACCACCCCA  1046

seq1  TGTTAGTGCTGAAGGAGCCTGAAACTCCTCCACACGTGGCTCCCTGGGCA  1100
      || ||||||||||||||| || |||||||||||| |||||||||||||||
seq2  TG-TAGTGCTGAAGGAGCTTG-AACTCCTCCACA-GTGGCTCCCTGGGCA  1093

seq1  GAAGATGCCTCTCAGTGTCTGCCTGCCTCATCCAAAGTCCCCAGCTACGG  1150
      ||  ||||||||||  | ||||||||| ||| |||||| |||||||||||
seq2  GAGAATGCCTCTCAAGGACTGCCTGCC-CAT-CAAAGT-CCCAGCTACGG  1140

seq1  AGACGATCAAACTCGAGCGGAGAAGGATGCTTTAGGGTG  1189
      |||||||| |||||||||||| |||  ||  ||||||||
seq2  AGACGATC-AACTCGAGCGGAAAAGAGTGTCTTAGGGTG  1178