BAC Information

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BAC

Clone NameB6Ng01-016J01
Chromosome19 (Build37)
Map Location 45,724,425 - 45,724,711
singlet/doubletsinglet
Overlap geneFbxw4
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016J01.bB6Ng01-016J01.g
ACCDH850494DH850495
length208612
definitionDH850494|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J01, 5' end.DH850495|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
acagggaaatcatcactcagggacttcaggcagaaaactagccagtcagc
ctctggatagacaaggctcaacagttcagagaaccaggccatcgcaaata
gttcacagacctgcaaggaagacatgcagatccctgccccccaccccacc
cctcccccagccccacccaaacatagggagaaaaggcagtgtgggggagg
gggaggtg
gaattctctgaactcactgtcctttcaggtccacatttgctctggctctg
gcaactgactgaaccaaacaattaggctcatacctagaactttggaaatg
gtaatggagttgataacacaccctaacagaaagaggaaggctccactcac
tagtacactttcactagaagcctcgccctgtcagcagtttaggaatttgt
aaagccaatctggacaatatttaaatggtttggaatttctacttcatgtt
taaatttttttttttttttttttttttttttttttttgaaaaagggtttc
tctggatagccctgggtgtcctggaactcactttggagaccaggctggcc
tccaactcaaaaatacccctgcctctgcctcccgagtgctgggaataaag
gggtgcaccaccccccccggccccatgtttaatgtttagtaaacatttaa
taaacattgtgaaggtctgaagaaatggatcagcagttaagaacattgac
ttttcttgcagagggcctgagttcaattcccaggaatcacatggtgcctt
tggaatccgatgcacacttttggtgtgtgttggaagaaagctgcagtgta
ctcctataaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45724425_45724711
seq2: B6Ng01-016J01.g_205_676

seq1  CTCCACTCACTAGAAGTCTCTCACTAGAAGCCTTGCCCTGCCAGCAGTTT  50
      ||||||||||||| |  || ||||||||||||| |||||| |||||||||
seq2  CTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCAGCAGTTT  50

seq1  AGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGATTTGGAATTTCT  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCT  100

seq1  ACTT----------------------------------------------  104
      ||||                                              
seq2  ACTTCATGTTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAA  150

seq1  --------------------------------------------------  104
                                                        
seq2  AAAGGGTTTCTCTGGATAGCCCTGGGTGTCCTGGAACTCACTTTGGAGAC  200

seq1  --------------------------------------------------  104
                                                        
seq2  CAGGCTGGCCTCCAACTCAAAAATACCCCTGCCTCTGCCTCCCGAGTGCT  250

seq1  ---------------------------------CATGCTTAATGTTTAAT  121
                                       |||| |||||||||| |
seq2  GGGAATAAAGGGGTGCACCACCCCCCCCGGCCCCATGTTTAATGTTTAGT  300

seq1  AA------AATAAAACTTGTGAAGGTCTGAAGAGATGGCTCCGCAGTTAA  165
      ||      ||||||  ||||||||||||||||| |||| || ||||||||
seq2  AAACATTTAATAAACATTGTGAAGGTCTGAAGAAATGGATCAGCAGTTAA  350

seq1  GAGCATTGACTTTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGGAACCAC  215
      || |||||||||||||| |||||| ||||||||||||||||||||| |||
seq2  GAACATTGACTTTTCTTGCAGAGGGCCTGAGTTCAATTCCCAGGAATCAC  400

seq1  ATGGTGACTTTGGAATCCGATGCACACTTTTGGTGTGTGTTGGAAGACAG  265
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGTGCCTTTGGAATCCGATGCACACTTTTGGTGTGTGTTGGAAGAAAG  450

seq1  CTGCAGTGTACTCATATAAATA  287
      ||||||||||||| |||||| |
seq2  CTGCAGTGTACTCCTATAAAAA  472