BAC Information

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BAC

Clone NameB6Ng01-017E02
Chromosome19 (Build37)
Map Location 15,442,635 - 15,612,096
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017E02.bB6Ng01-017E02.g
ACCDH850992DH850993
length365708
definitionDH850992|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E02, 5' end.DH850993|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,442,635 - 15,442,980)(15,611,389 - 15,612,096)
sequence
ttggactttatgtttgtagccagccattgttgaattagctggactgcagc
ctgaaagtcattctaatagattccttttatctatccttctatctatgtat
ctatgtatctatgtatctacctatctacttatctacctatttatctatgt
atctatctacctatttatctatgtatctatctatctatctatctatctat
ccatccatccgtctgtccatctacccatccatcaatttctatctctatct
gtctgtatatacatttgtatgtataaagagagagagagagagagagagag
ggagagagagagagagagagagagagagagagagagagagagagatagat
agagggagggggggg
gaattcatttgcacagcagatcatgtgtcttataacctttggtgacacat
gaccaaagtaagaatgtgtcatcatgcacctcttctcagatgtctattaa
actttttcttgctttgttccaaccgtagaattacatctaatctcatgaaa
gcataattgttgcatcatgttcatttgtttggagaacctgtataaagata
ttggtttgcacataaaacttgctgtttaaatatttattttcttctatgct
aatatttccagtctaacattgtccaattccaggataaagttgaactatgt
gctatgtgtcttgcttcctttattgcttgtcttttcttctatgtgaacac
attttacatcataagaactgatcttcttgtttgacttttatttgatcctg
aaaaagaattgactgctttgttttgtgtgaggtttggtttctagaaatgt
tgacttggtctaaattcaggctccagtgaaaatatcttataaaagtttta
gctaaaaaacaaaacaaaacaaaaaaaaaaaaaaacaaaaaaaaaaaaaa
accaaacctctgtaaacagaaaatctataacatacctttttttggttaag
gttttgggaaaagtatgcaggttaatacccaaatcaaccacgcttcttgt
catttaactaatagtaatatactttatatatatgtgtgtgtgtgtgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15442635_15442980
seq2: B6Ng01-017E02.b_43_394

seq1  GAATTCTTGGACTTTATGTTTGTAGCCAGCCATTGTTGAATTAGCTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGACTTTATGTTTGTAGCCAGCCATTGTTGAATTAGCTGGAC  50

seq1  TGCAGCCTGAAAGTCATTCTAATAGATTCCTTTTATCTATCCTTCTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTGAAAGTCATTCTAATAGATTCCTTTTATCTATCCTTCTATCT  100

seq1  ATGTATCTATGTATCTATGTATCTACCTATCTACTTATCTACCTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTATGTATCTATGTATCTACCTATCTACTTATCTACCTATTTAT  150

seq1  CTATGTATCTATCTACCTATTTATCTATGTATCTATCTATCTATCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATCTATCTACCTATTTATCTATGTATCTATCTATCTATCTATCT  200

seq1  ATCTATCCATCCATCCGTCTGTCCATCTACCCATCCATCAATTTCTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCCATCCATCCGTCTGTCCATCTACCCATCCATCAATTTCTATCT  250

seq1  CTATCTGTCTGTATATACATTTGTATGTATAAAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTCTGTATATACATTTGTATGTATAAAGAGAGAGAGAGAGAGAG  300

seq1  A------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  344
      |      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  350

seq1  AT  346
      ||
seq2  AT  352

seq1: chr19_15611389_15612096
seq2: B6Ng01-017E02.g_66_773 (reverse)

seq1  CACACACACACACACACACACACACATATATATAAAGTATATTACTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATATATATAAAGTATATTACTATTA  50

seq1  GTTAAATGACAAGAAGCGTGGTTGATTTGGGTATTAACCTGCATACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGACAAGAAGCGTGGTTGATTTGGGTATTAACCTGCATACTTTT  100

seq1  CCCAAAACCTTAACCAAAAAAAGGTATGTTATAGATTTTCTGTTTACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACCTTAACCAAAAAAAGGTATGTTATAGATTTTCTGTTTACAGA  150

seq1  GGTTTGGTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTGTTTTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTGTTTTGTTTTGT  200

seq1  TTTTTAGCTAAAACTTTTATAAGATATTTTCACTGGAGCCTGAATTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCTAAAACTTTTATAAGATATTTTCACTGGAGCCTGAATTTAGA  250

seq1  CCAAGTCAACATTTCTAGAAACCAAACCTCACACAAAACAAAGCAGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCAACATTTCTAGAAACCAAACCTCACACAAAACAAAGCAGTCAA  300

seq1  TTCTTTTTCAGGATCAAATAAAAGTCAAACAAGAAGATCAGTTCTTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCAGGATCAAATAAAAGTCAAACAAGAAGATCAGTTCTTATGA  350

seq1  TGTAAAATGTGTTCACATAGAAGAAAAGACAAGCAATAAAGGAAGCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGTGTTCACATAGAAGAAAAGACAAGCAATAAAGGAAGCAAGA  400

seq1  CACATAGCACATAGTTCAACTTTATCCTGGAATTGGACAATGTTAGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCACATAGTTCAACTTTATCCTGGAATTGGACAATGTTAGACTG  450

seq1  GAAATATTAGCATAGAAGAAAATAAATATTTAAACAGCAAGTTTTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTAGCATAGAAGAAAATAAATATTTAAACAGCAAGTTTTATGTG  500

seq1  CAAACCAATATCTTTATACAGGTTCTCCAAACAAATGAACATGATGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAATATCTTTATACAGGTTCTCCAAACAAATGAACATGATGCAAC  550

seq1  AATTATGCTTTCATGAGATTAGATGTAATTCTACGGTTGGAACAAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCTTTCATGAGATTAGATGTAATTCTACGGTTGGAACAAAGCAA  600

seq1  GAAAAAGTTTAATAGACATCTGAGAAGAGGTGCATGATGACACATTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTTTAATAGACATCTGAGAAGAGGTGCATGATGACACATTCTTA  650

seq1  CTTTGGTCATGTGTCACCAAAGGTTATAAGACACATGATCTGCTGTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCATGTGTCACCAAAGGTTATAAGACACATGATCTGCTGTGCAA  700

seq1  ATGAATTC  708
      ||||||||
seq2  ATGAATTC  708