BAC Information

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BAC

Clone NameB6Ng01-017F24
Chromosome19 (Build37)
Map Location 25,120,306 - 25,300,157
singlet/doubletdoublet
Overlap geneDock8
Upstream gene1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, LOC100042503
Downstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017F24.bB6Ng01-017F24.g
ACCDH851079DH851080
length1,0861,068
definitionDH851079|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F24, 5' end.DH851080|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,120,306 - 25,121,383)(25,299,085 - 25,300,157)
sequence
gaattccacaagctatattctccaaagtgagagcattagatgtgaaagta
aaggcagttgcatagttgtcttgattgttatagtattactttcaagagac
ggtatcctcatctaccagctcccagcagtctgcggcatgctgggaaatgt
tatctctgggacctgttttaggaaagtttgtttccaaggtttttaagtgc
tgggaagtagttcatttccttataggatggcttattttcatataaaggat
aaacatgtcctctttatgttggagagttaagaaggtaagacccaactgcc
ttgtatgattgactatgtagggacaggggacagcatcattttaggtgtgt
taggaatgagaattcttgatgttatataaagaaacacaccaccaaagaga
aagttatcaggtaaggcaatctctttttatagaaaggatacgtcagaacc
cataccagcatgagtggcccaaaaggccttggtcttttttatccccgatg
tgggtggtacctgcatctcattccaacttcataatcttcacagtgcaaca
cagtggcttcttcttcagggaagaagaagaagactcgtccagttaactgc
ctttgatagaagcaacagatttctcacaggtcagacctgaagtgccaggg
aagatcagttgtgtggccctgaactaggacttttgggtttgtttaagaac
tgaagaagccaagcatagttctcagctcactgaaggctgagacaggagga
tcatccagacttagtcagcaggctacatagtaagactctgtatcaagaaa
caaaaaagccaatcaacagacctagaaaggagggacattctgatttcatg
atagaaagaatgctgaggctctgctatggagagcagcaagagtctgtcct
ggtggacctttcccttcagagggtcgtctggtattcccgcttctgaaaga
ccactatgtttgatggaaacagtaataatggaattccagaagttttgggg
gagggaactgaatcgagaaaatttctgaaacaccctgtattgtctgaaaa
cctcatcagggaggtcagaaaagcgtcagtaggagg
gaattcagaaacaatggattgaaaaccaggattgaaagatggctcgtagc
cgggcagtggtggtgcatgcctttaatcccagcacttgggaggcagaggc
aggtggatttctgagactgaggccagcctggtctacaaagtgagttccag
gacagccagggctacacagagataccctgtctcgaaaaacaaaaacaaaa
acaaacaaaaaaattaagaaaagaaagaaagaaaggaagaaatgaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaagagaga
gagagaaaaagaaacactggggaggttgaggcagaagaattaccatgagt
tataggctgccctgaattatatagtaagttccaggctagcctgggctata
gagaacctgtctcaacaacaattaaaaaaaaaaaaaacaaaaacaaaaac
ctaaaaacaaaacaaagcaaaaaaacaagagacaataagatatgattgag
cattctttttttaaaaaaaaagaattatctattttatgaatattttatga
gtagctgtcttcagacacaccaaaagagagcatggaatcctattacatat
ggttttaagccaccatgtgattgctgggaaatgaactcaggacctctagg
agagcagtcagtactcttaactgctgagctatctctccagcccatgagca
ctcttattttacatttcatagaaattgagtcaaagacggtgccacattca
agataacagaggggctgaaggtctagtcccgcaactctagtctagagttc
actgtaaagaacaatattccgacctcatctctgttttctgcatactcttc
ttggaatgttttactatatctcaaataataatcttgggttgcaaattggg
ggcccaattggctataccattttacatgataccatagtactcttggtgat
tcagatgttgacgtagccacgatcatctgtcctcaaccgcagtggcagcc
ataccgcacttcactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25120306_25121383
seq2: B6Ng01-017F24.b_49_1127

seq1  GAATTCCACAAGCTATATTCTCCAAAGTGAGAGCATTAGATGTGAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGCTATATTCTCCAAAGTGAGAGCATTAGATGTGAAAGTA  50

seq1  AAGGCAGTTGCATAGTTGTCTTGATTGTTATAGTATTACTTTCAAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTTGCATAGTTGTCTTGATTGTTATAGTATTACTTTCAAGAGAC  100

seq1  GGTATCCTCATCTACCAGCTCCCAGCAGTCTGCGGCATGCTGGGAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTCATCTACCAGCTCCCAGCAGTCTGCGGCATGCTGGGAAATGT  150

seq1  TATCTCTGGGACCTGTTTTAGGAAAGTTTGTTTCCAAGGTTTTTAAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGGGACCTGTTTTAGGAAAGTTTGTTTCCAAGGTTTTTAAGTGC  200

seq1  TGGGAAGTAGTTCATTTCCTTATAGGATGGCTTATTTTCATATAAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTAGTTCATTTCCTTATAGGATGGCTTATTTTCATATAAAGGAT  250

seq1  AAACATGTCCTCTTTATGTTGGAGAGTTAAGAAGGTAAGACCCAACTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTCCTCTTTATGTTGGAGAGTTAAGAAGGTAAGACCCAACTGCC  300

seq1  TTGTATGATTGACTATGTAGGGACAGGGGACAGCATCATTTTAGGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGATTGACTATGTAGGGACAGGGGACAGCATCATTTTAGGTGTGT  350

seq1  TAGGAATGAGAATTCTTGATGTTATATAAAGAAACACACCACCAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGAGAATTCTTGATGTTATATAAAGAAACACACCACCAAAGAGA  400

seq1  AAGTTATCAGGTAAGGCAATCTCTTTTTATAGAAAGGATACGTCAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCAGGTAAGGCAATCTCTTTTTATAGAAAGGATACGTCAGAACC  450

seq1  CATACCAGCATGAGTGGCCCAAAAGGCCTTGGTCTTTTTTATCCCCGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAGCATGAGTGGCCCAAAAGGCCTTGGTCTTTTTTATCCCCGATG  500

seq1  TGGGTGGTACCTGCATCTCATTCCAACTTCATAATCTTCACAGTGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTACCTGCATCTCATTCCAACTTCATAATCTTCACAGTGCAACA  550

seq1  CAGTGGCTTCTTCTTCAGGGAAGAAGAAGAAGACTCGTCCAGTTAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTCTTCTTCAGGGAAGAAGAAGAAGACTCGTCCAGTTAACTGC  600

seq1  CTTTGATAGAAGCAACAGATTTCTCACAGGTCAGACCTGAAGTGCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATAGAAGCAACAGATTTCTCACAGGTCAGACCTGAAGTGCCAGGG  650

seq1  AAGATCAGTTGTGTGGCCCTGAACTAGGACTTTTGGGTTTGTTTAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGTTGTGTGGCCCTGAACTAGGACTTTTGGGTTTGTTTAAGAAC  700

seq1  TGAAGAAGCCAAGCATAGTTCTCAGCTCACTGAAGGCTGAGACAGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGCCAAGCATAGTTCTCAGCTCACTGAAGGCTGAGACAGGAGGA  750

seq1  TCA-CCAGACTTAGTCAGCAGGCTACATAGTAAGACTCTGTATCAAGAAA  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGACTTAGTCAGCAGGCTACATAGTAAGACTCTGTATCAAGAAA  800

seq1  CAAAAAAAGCCAATCAACAGACCTAGAAAGGAGGGACATTCTGATTTCAT  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAAAAAGCCAATCAACAGACCTAGAAAGGAGGGACATTCTGATTTCAT  849

seq1  GATAGAAAGAAATGCTGAGGCTCTGCTATGGAGAGCAGCAAGAGTCTGTC  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAG-AATGCTGAGGCTCTGCTATGGAGAGCAGCAAGAGTCTGTC  898

seq1  CTGGTGGACCTTTCCCTCCAGAGGGTCGTCTGGTATTCCCGCTTCTGAAA  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGGTGGACCTTTCCCTTCAGAGGGTCGTCTGGTATTCCCGCTTCTGAAA  948

seq1  GACCACTATGTTTGATGGAAACAGTAAT-ATGGAATTCCAGAAGTTTTTG  998
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  GACCACTATGTTTGATGGAAACAGTAATAATGGAATTCCAGAAGTTTTGG  998

seq1  GGGGAGGAACTGAAGGCAG-AAATTTCTGAAACAGCCTGTATTGTCTGAT  1047
      |||  |||||||||   || |||||||||||||| |||||||||||||| 
seq2  GGGAGGGAACTGAATCGAGAAAATTTCTGAAACACCCTGTATTGTCTGA-  1047

seq1  AAACCTCAGCAGGGAGGTCAGAAAAG-GTCAG  1078
      |||||||| ||||||||||||||||| |||||
seq2  AAACCTCATCAGGGAGGTCAGAAAAGCGTCAG  1079

seq1: chr19_25299085_25300157
seq2: B6Ng01-017F24.g_67_1134 (reverse)

seq1  GAAAGTGAAGTGCAGTTATGACTGCCACTTGCGTTTGAGGGCAGGATGAT  50
      ||||||||||||| | |||| ||||||| |||| |||||| || ||||||
seq2  GAAAGTGAAGTGC-GGTATGGCTGCCAC-TGCGGTTGAGGACA-GATGAT  47

seq1  CTGTGGCTACTGTCAACATCTGAAATCACAAGAAGTACTATGTTATCATT  100
      | |||||||| ||||||||||| |||||| |  ||||||||| ||||| |
seq2  C-GTGGCTAC-GTCAACATCTG-AATCACCAAGAGTACTATGGTATCA-T  93

seq1  GTAAAAATGGTATAGCAAATTGGGCCCACAATTTGCAAACCAAAGATTAT  150
      || ||||||||||||| |||||||||| |||||||| |||| ||||||||
seq2  GT-AAAATGGTATAGCCAATTGGGCCCCCAATTTGC-AACCCAAGATTAT  141

seq1  TATTTGAGATATAGTAAAACATTCCAAGGAGAGTATGGCAGAAAACAGAG  200
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TATTTGAGATATAGTAAAACATTCCAAGAAGAGTAT-GCAGAAAACAGAG  190

seq1  ATGAGGTCGGAATATTGTTCTTTACAGTGAACTCTAGACTAGAGTTGC-G  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGAGGTCGGAATATTGTTCTTTACAGTGAACTCTAGACTAGAGTTGCGG  240

seq1  GACTAGACCTTCAGCCCCTCTGTTATCTTGAATGTGGCACCGTCTTTGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGACCTTCAGCCCCTCTGTTATCTTGAATGTGGCACCGTCTTTGAC  290

seq1  TCAATTTCTATGAAATGTAAAATAAGAGTGCTCATGGGCTGGAGAGATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTATGAAATGTAAAATAAGAGTGCTCATGGGCTGGAGAGATAG  340

seq1  CTCAGCAGTTAAGAGTACTGACTGCTCTCCTAGAGGTCCTGAGTTCATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTTAAGAGTACTGACTGCTCTCCTAGAGGTCCTGAGTTCATTT  390

seq1  CCCAGCAATCACATGGTGGCTTAAAACCATATGTAATAGGATTCCATGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAATCACATGGTGGCTTAAAACCATATGTAATAGGATTCCATGCT  440

seq1  CTCTTTTGGTGTGTCTGAAGACAGCTACTCATAAAATATTCATAAAATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGGTGTGTCTGAAGACAGCTACTCATAAAATATTCATAAAATAG  490

seq1  ATAATTCTTTTTTTTTAAAAAAAGAATGCTCAATCATATCTTATTGTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTTTTTTTTTAAAAAAAGAATGCTCAATCATATCTTATTGTCTC  540

seq1  TTGTTTTTTTGCTTTGTTTTGTTTTTAGGTTTTTGTTTTTGTTTTTTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTGCTTTGTTTTGTTTTTAGGTTTTTGTTTTTGTTTTTTTTT  590

seq1  TTTTTAATTGTTGTTGAGACAGGTTCTCTATAGCCCAGGCTAGCCTGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTGTTGTTGAGACAGGTTCTCTATAGCCCAGGCTAGCCTGGAA  640

seq1  CTTACTATATAATTCAGGGCAGCCTATAACTCATGGTAATTCTTCTGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATATAATTCAGGGCAGCCTATAACTCATGGTAATTCTTCTGCCT  690

seq1  CAACCTCCCCAGTGTTTCTTTTTCTCTCTCTCTCTT----TTTCTTTCTT  745
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  CAACCTCCCCAGTGTTTCTTTTTCTCTCTCTCTCTTTTTCTTTCTTTCTT  740

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTC  790

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCATTTCTTCCTTTCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCATTTCTTCCTTTCTT  840

seq1  TCTTTCTTTTCTTAATTTTTTTGTTTGTTTTTGTTTTTGTTTTTCGAGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTCTTAATTTTTTTGTTTGTTTTTGTTTTTGTTTTTCGAGAC  890

seq1  AGGGTATCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  940

seq1  GGCTGGCCTCAGTCTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCAGTCTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGG  990

seq1  GATTAAAGGCATGCACCACCACTGCCCGGCTACGAGCCATCTTTCAATCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGCACCACCACTGCCCGGCTACGAGCCATCTTTCAATCC  1040

seq1  TGGTTTTCAATCCATTGTTTCTGAATTC  1073
      ||||||||||||||||||||||||||||
seq2  TGGTTTTCAATCCATTGTTTCTGAATTC  1068