BAC Information

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BAC

Clone NameB6Ng01-017G20
Chromosome19 (Build37)
Map Location 59,498,900 - 59,499,923
singlet/doubletsinglet
Overlap geneEmx2os
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
Downstream geneEmx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017G20.bB6Ng01-017G20.g
ACCDH851116DH851117
length2571,025
definitionDH851116|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G20, 5' end.DH851117|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
attgagtaatctttggcaagtcaccagcatttctgatatctagtttcttc
ccttataaaatgaagggaatcaactgactgttgattaaagggccttctac
aatagttctatctgattctgtggttctattttagataaatgacagataga
tagatgatagaaaatagataatagagataacaaatagaagatgatttata
aatagatgatagatatggataatagatatatagatgataaataggtgcta
gagatag
gaattctagtttcagtgagagatcctgtctcaaaaaaataaggtagagag
ttctaggggaagacacttggcattgacctctgacctgcacacaggccaaa
tacacccacacatatgtattcaactcagaaaaaaaaatccagggccaaac
aaggtctctgagcagacaaatagcaaaaacggtggttggtctgcagagac
ttttgaggacgcaaagctaagcagccttcctcagagcttgtactcttttg
gtaagctcacatttaaaagccaggagctccatgaaactgagtagattccc
agtgtcaagctagccagctccttcaggaaggatgtaaggacctctgcaga
aagccagctaggcgactcccttcgttaattacatacgtagaaagagagtt
tccacacatttgttgtatgtcccccgtgcttttttcacatgagcttgagt
tgtacaaccaaacaaaacagctcacatccaaaacaaaatggtaggtaaaa
gctctggctctatagacacaaaagcaaacaaaacaaaacaaaaaccccaa
aattcaaaacaccaaaactccccatcccaccacccatcagagaggacgcc
tctcagaaggcttcgaaagaaggtaaaaaggcatgtgtttgccatctttc
cgcctgatatggaaaccatatgctgaaatacactagcaaacacactttaa
tataacactctcttttattaaatgtggttttataaatgctctccccagcc
agggcacctttgccgtgctggaggctggaacttggcaaaatagtcttccc
actgttacatctattggatacacatttttttttttgaaatgagtctcgga
ccctcggaaaataggctgtttctgatattaacttgtgaggagggaagggg
cacagagggccatctttttttcctctgattaaattaaaagactgtaacgg
gtgctttctgtaactggtaaaagggcagagccttctgtactcattagcga
gcttctaccgaagtttatttgatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59498900_59499923
seq2: B6Ng01-017G20.g_69_1093

seq1  GAATTCTAGTTTCAGTGAGAGATCCTGTCTCAAAAAAATAAGGTAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTTCAGTGAGAGATCCTGTCTCAAAAAAATAAGGTAGAGAG  50

seq1  TTCTAGGGGAAGACACTTGGCATTGACCTCTGACCTGCACACAGGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGGGAAGACACTTGGCATTGACCTCTGACCTGCACACAGGCCAAA  100

seq1  TACACCCACACATATGTATTCAACTCAGAAAAAAAAATCCAGGGCCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCACACATATGTATTCAACTCAGAAAAAAAAATCCAGGGCCAAAC  150

seq1  AAGGTCTCTGAGCAGACAAATAGCAAAAACGGTGGTTGGTCTGCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCTGAGCAGACAAATAGCAAAAACGGTGGTTGGTCTGCAGAGAC  200

seq1  TTTTGAGGACGCAAAGCTAAGCAGCCTTCCTCAGAGCTTGTACTCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGACGCAAAGCTAAGCAGCCTTCCTCAGAGCTTGTACTCTTTTG  250

seq1  GTAAGCTCACATTTAAAAGCCAGGAGCTCCATGAAACTGAGTAGATTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCACATTTAAAAGCCAGGAGCTCCATGAAACTGAGTAGATTCCC  300

seq1  AGTGTCAAGCTAGCCAGCTCCTTCAGGAAGGATGTAAGGACCTCTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAAGCTAGCCAGCTCCTTCAGGAAGGATGTAAGGACCTCTGCAGA  350

seq1  AAGCCAGCTAGGCGACTCCCTTCGTTAATTACATACGTAGAAAGAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCTAGGCGACTCCCTTCGTTAATTACATACGTAGAAAGAGAGTT  400

seq1  TCCACACATTTGTTGTATGTCCCCCGTGCTTTTTTCACATGAGCTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACATTTGTTGTATGTCCCCCGTGCTTTTTTCACATGAGCTTGAGT  450

seq1  TGTACAACCAAACAAAACAGCTCACATCCAAAACAAAATGGTAGGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACCAAACAAAACAGCTCACATCCAAAACAAAATGGTAGGTAAAA  500

seq1  GCTCTGGCTCTATAGACAC-AAAGCAAACAAAACAAAACAAAAACCCCAA  549
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTCTGGCTCTATAGACACAAAAGCAAACAAAACAAAACAAAAACCCCAA  550

seq1  AATTCAAAACACCAAAACTCCCCATCCCACCACCCATCAGAGAGGACGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAACACCAAAACTCCCCATCCCACCACCCATCAGAGAGGACGCC  600

seq1  TCTCAGAAGGCTTCGAAAGAAGGTAAAAAGGCATGTGTTTGCCATCTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAGGCTTCGAAAGAAGGTAAAAAGGCATGTGTTTGCCATCTTTC  650

seq1  CGCCTGATATGGAAACCATATGCTGAAATACACTAGCAAACACAC-TTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGCCTGATATGGAAACCATATGCTGAAATACACTAGCAAACACACTTTAA  700

seq1  TATAACACTCTCTTTTATTAAATGTGGTTTTATAAATGCTCTCCCCAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTCTCTTTTATTAAATGTGGTTTTATAAATGCTCTCCCCAGCC  750

seq1  AGGGCACCTTTGCCGTGCTGGAGGCTGGAACTTGGCAAAATAGTCTTCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCTTTGCCGTGCTGGAGGCTGGAACTTGGCAAAATAGTCTTCCC  800

seq1  ACTGTTACATCTATT-GATACACATTTTTTTTTTTTGAAAATGAGTCTCG  847
      ||||||||||||||| |||||||||||||||||||   ||||||||||||
seq2  ACTGTTACATCTATTGGATACACATTTTTTTTTTT--GAAATGAGTCTCG  848

seq1  GACCCTCGGAAAATAGGCTGTTTCTGATTATTAC-TGTGA-GAGGGAAGG  895
      ||||||||||||||||||||||||||||  | || ||||| |||||||||
seq2  GACCCTCGGAAAATAGGCTGTTTCTGATATTAACTTGTGAGGAGGGAAGG  898

seq1  GGCACAGGAGGGCATC-TTTTTTCCTCTGATAAATTAAAAAGACTGTAAC  944
      |||||||  || |||| |||||||||||||| || | |||||||||||||
seq2  GGCACAGAGGGCCATCTTTTTTTCCTCTGATTAAATTAAAAGACTGTAAC  948

seq1  GGGTGCTTTCTGTAACCTGTAAAAGGGCAGAGCCATCTGTGACTCATTTA  994
      ||||||||||||||||  |||||||||||||||| ||||| ||||| |||
seq2  GGGTGCTTTCTGTAACTGGTAAAAGGGCAGAGCCTTCTGT-ACTCA-TTA  996

seq1  GC-AGCTTCTTACCGAAGATTTATTTGATTA  1024
      || |||||| |||||||| ||||||||||||
seq2  GCGAGCTTC-TACCGAAG-TTTATTTGATTA  1025