BAC Information

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BAC

Clone NameB6Ng01-017P19
Chromosome18 (Build37)19 (Build37)
Map Location 89,158,446 - 89,159,38331,269,086 - 31,269,119
singlet/doubletsingletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017P19.bB6Ng01-017P19.g
ACCDH851509DH851510
length93880
definitionDH851509|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P19, 5' end.DH851510|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,158,446 - 89,159,383)(31,269,086 - 31,269,119)
sequence
gaattccttcaactaacattaaagaatatatcaactgtatgtcttaaggt
ttaaatttactctaactaaaaaacaaacaaacaaaaagattgggaaacac
tgtgctggtatagctattatcaagctaacatacatatgcaaacaactcga
gttaatcattttcttcttggtatgaactaataatttctttgagcaaaagc
acaagaaaattttaaaattaaaacacagcaaatataaacccatgaattag
atatcacagtattttatagaagcaggggtatcatgacagctatcataccc
attggccttttactgatctagacctgtctctattagtgtaaaccaaacca
ctaaggaaaagattcactcagatatgcatacaacatgtattctgtcataa
agtaaaacctactataccctaaagaagataatgactctcaccacattgat
agcaaaaaggctgttatcatcccagatttctgatgaaattgcttgtccaa
tgagcagcatgtcctctgcaagcagttccagaactcttattatcatttct
ctgctgcctagacataaaaatgggagaagcacaagggaaaacaaagttac
ttgattttcagttaattagctggaccctctagctaggcatgtttccaaat
tcttatttccccatccttggtgtttttaaactgctaacagagatgaataa
ggaagttacaatctcactgtaacagaccaaatgtgctcataagtgtcaaa
gttacttgaaagtagaaattactaaaaagagtctggagagatggttcagt
gattaagagcactgtctgccctcttctggtatgtctgaagacagctacag
tgtactcatataaataaatctttttttaaaaagaaagaaagagagagaga
gagagagagagagagagagagagagagagagagagaga
aaaaaggtcaacaagctgaagtgcccaagtgaggatgcctcagttccact
tgggagagagaagaaagcaatcacaagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89158446_89159383
seq2: B6Ng01-017P19.b_45_982 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT  50

seq1  TCTTTCTTTTTTAAAAAAGATTTATTTATATGAGTACACTGTAGCTGTCT  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTAAAAAAAGATTTATTTATATGAGTACACTGTAGCTGTCT  100

seq1  TCAGACATACCAGAAGAGGGCAGACAGTGCTCTTAATCACTGAACCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATACCAGAAGAGGGCAGACAGTGCTCTTAATCACTGAACCATCT  150

seq1  CTCCAGACTCTTTTTAGTAATTTCTACTTTCAAGTAACTTTGACACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTCTTTTTAGTAATTTCTACTTTCAAGTAACTTTGACACTTAT  200

seq1  GAGCACATTTGGTCTGTTACAGTGAGATTGTAACTTCCTTATTCATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATTTGGTCTGTTACAGTGAGATTGTAACTTCCTTATTCATCTCT  250

seq1  GTTAGCAGTTTAAAAACACCAAGGATGGGGAAATAAGAATTTGGAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGTTTAAAAACACCAAGGATGGGGAAATAAGAATTTGGAAACAT  300

seq1  GCCTAGCTAGAGGGTCCAGCTAATTAACTGAAAATCAAGTAACTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCTAGAGGGTCCAGCTAATTAACTGAAAATCAAGTAACTTTGTTT  350

seq1  TCCCTTGTGCTTCTCCCATTTTTATGTCTAGGCAGCAGAGAAATGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTGCTTCTCCCATTTTTATGTCTAGGCAGCAGAGAAATGATAAT  400

seq1  AAGAGTTCTGGAACTGCTTGCAGAGGACATGCTGCTCATTGGACAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCTGGAACTGCTTGCAGAGGACATGCTGCTCATTGGACAAGCAA  450

seq1  TTTCATCAGAAATCTGGGATGATAACAGCCTTTTTGCTATCAATGTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGAAATCTGGGATGATAACAGCCTTTTTGCTATCAATGTGGTG  500

seq1  AGAGTCATTATCTTCTTTAGGGTATAGTAGGTTTTACTTTATGACAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATTATCTTCTTTAGGGTATAGTAGGTTTTACTTTATGACAGAAT  550

seq1  ACATGTTGTATGCATATCTGAGTGAATCTTTTCCTTAGTGGTTTGGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGTATGCATATCTGAGTGAATCTTTTCCTTAGTGGTTTGGTTTA  600

seq1  CACTAATAGAGACAGGTCTAGATCAGTAAAAGGCCAATGGGTATGATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAGAGACAGGTCTAGATCAGTAAAAGGCCAATGGGTATGATAGC  650

seq1  TGTCATGATACCCCTGCTTCTATAAAATACTGTGATATCTAATTCATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGATACCCCTGCTTCTATAAAATACTGTGATATCTAATTCATGGG  700

seq1  TTTATATTTGCTGTGTTTTAATTTTAAAATTTTCTTGTGCTTTTGCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTGCTGTGTTTTAATTTTAAAATTTTCTTGTGCTTTTGCTCAA  750

seq1  AGAAATTATTAGTTCATACCAAGAAGAAAATGATTAACTCGAGTTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTAGTTCATACCAAGAAGAAAATGATTAACTCGAGTTGTTTG  800

seq1  CATATGTATGTTAGCTTGATAATAGCTATACCAGCACAGTGTTTCCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGTTAGCTTGATAATAGCTATACCAGCACAGTGTTTCCCAAT  850

seq1  CTTTTTGTTTGTTTGTTTTTTAGTTAGAGTAAATTTAAACCTTAAGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTGTTTGTTTTTTAGTTAGAGTAAATTTAAACCTTAAGACAT  900

seq1  ACAGTTGATATATTCTTTAATGTTAGTTGAAGGAATTC  938
      ||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATATATTCTTTAATGTTAGTTGAAGGAATTC  938

seq1: chr19_31269086_31269119
seq2: B6Ng01-017P19.g_117_150 (reverse)

seq1  CCACTTGTGATTGCTTTCTTCTCCCTCCCAAGTG  34
      ||||||||||||||||||||||| ||||||||||
seq2  CCACTTGTGATTGCTTTCTTCTCTCTCCCAAGTG  34