BAC Information

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BAC

Clone NameB6Ng01-018A04
Chromosome19 (Build37)
Map Location 37,658,195 - 37,795,033
singlet/doubletdoublet
Overlap geneExoc6, Cyp26c1, Cyp26a1
Upstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
Downstream geneLOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018A04.bB6Ng01-018A04.g
ACCDH851526DH851527
length1,1141,083
definitionDH851526|Mus musculus domesticus DNA, BAC clone: B6Ng01-018A04, 5' end.DH851527|Mus musculus domesticus DNA, BAC clone: B6Ng01-018A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,658,195 - 37,659,325)(37,793,934 - 37,795,033)
sequence
gaattcttcattcatgttgctgatttgtcaggctccaggctaatggtgtc
ccttcatctaatgctggctttaaccctttactgaggtcattggtcattgt
aaagactttcccatgagttatttggcatttcatccattcagatacttgga
ttcattttttaaggaattatggacttctagagaactcattctgtcttgtt
tcataacatccctcatggatttctgtgctgtggtttgtgtatttgttgag
attttttttttctcaccactcttactttgtggaagtcttcttagtagata
gccttctggcttcatgatccccaggaaaagacattttttttttaaacatt
ataatctctaaatcacagtgtagagtttgaagtgaaaagctaacatagta
aaatccttattagaatgttcagttccagctgagtgtggtagcatgcttgg
actctgggcactcagaaggccatggcaagagaatggctgcaaagttggaa
gctacctagggcgacctagcaagatagcaaggcgttgttaaataacacaa
gacaaaacaaatgaaacccctcaaacaaatggatagaaaactttagaact
tcatttctaatagcaataaacataagtattaaaaaccattgaattaataa
taaaatgttaacctgaaaaaaaattaaaaaagaaatcaaacatatttagt
tatataaaaatgtaaaagatattaattctgaatacaaatttgtgttttta
tttacttgttattagaacatagcacatgtttatgctatttggatccatta
agtattaatgagaataatttattcctgaagtaaaataattttaacatcta
agtcctcgtaagctcttgtaagaaaataaactcaaagcatttacattata
aaatacatttggacaaatatattaaatcagtagagttgagtgtaagtagt
tcagaagtagagggatggacgtcagcgtggtgtgtggggctctcccagac
ctagcaaacgatgcttggctctgttaaatgaggtgtacactttattttat
aattctagcatgacattaggcttcacgtcatacctctatactgatcgact
cagtaaaacttttc
gaattctgttcacctctttgtcagcttaaggtcaacctaagctatgagag
tcgttgactcaaaaattacttagttaatttaaaaaagagcaaagcctcta
ggagaagaccttggtggctttgcatcaggcaaaagtttccagtgttagag
gtctagtcgtagagtggagcatatgctaaggacaggtgacgttcagtctc
acaccacaaggaaaaaaaaaaaaaacaatgtcattgatatgatgcaagag
tgtgacccatttaagaaaaaaatatctaggtctggagatatggctcagtg
attaagagaaagggctgtttctcagtacccacatggtggctcacaaccat
cacatgtccagttccaggaacgccagcttcaccttctgagctctgaggac
agcaggcacaggtgtagttcacaatgacacatacaggggagacattcata
tgatgtataccatgtaacacatgcatatacaatacaaaaaagtacacctt
ctcaaagattaaatctgaggctgggaacggtggtgcatgcctttaacccc
agcactggggaggcagaggcaaatagatctctttgagtttgagtttgcca
gcctggtgtagcctatcgagttctgggacaaccagaactaaaacagagag
agcctgtcttaagaaataaagataaatctataagcttattttcagcaaaa
aaaaaatggacaaagcatggccagtggccttctggtggatctgatgagca
aagatcagactccagctccacgccccacagcctctgaacattctcctgga
aggagaaagccccagctcctcccttcgcactgttgctcactcgctgcctc
cggggtgccctatctgccttgtggaaggcagatgagccacccccaagcag
ccctggagactgggaaccggaagctttcttcttctgctcaggctccgtgt
gcactttctggtgggagccccaccccatcctctctgctttcaatctggta
aagacgtctcaccattctcctctgtcctcccaggagatgacagttgttgt
cactagcccttctgtttgcttggaaatttgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37658195_37659325
seq2: B6Ng01-018A04.b_46_1159

seq1  GAATTCTTCATTCATGTTGCTGATTTGTCAGGCTCCAGGCTAATGGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTCATGTTGCTGATTTGTCAGGCTCCAGGCTAATGGTGTC  50

seq1  CCTTCATCTAATGCTGGCTTTAACCCTTTACTGAGGTCATTGGTCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCTAATGCTGGCTTTAACCCTTTACTGAGGTCATTGGTCATTGT  100

seq1  AAAGACTTTCCCATGAGTTATTTGGCATTTCATCCATTCAGATACTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTTCCCATGAGTTATTTGGCATTTCATCCATTCAGATACTTGGA  150

seq1  TTCATTTTTTAAGGAATTATGGACTTCTAGAGAACTCATTCTGTCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTAAGGAATTATGGACTTCTAGAGAACTCATTCTGTCTTGTT  200

seq1  TCATAACATCCCTCATGGATTTCTGTGCTGTGGTTTGTGTATTTGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACATCCCTCATGGATTTCTGTGCTGTGGTTTGTGTATTTGTTGAG  250

seq1  ATTTTTTTTTTCTCACCACTCTTACTTTGTGGAAGTCTTCTTAGTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTCTCACCACTCTTACTTTGTGGAAGTCTTCTTAGTAGATA  300

seq1  GCCTTCTGGCTTCATGATCCCCAGGAAAAGACATTTTTTTTTTAAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGGCTTCATGATCCCCAGGAAAAGACATTTTTTTTTTAAACATT  350

seq1  ATAATCTCTAAATCACAGTGTAGAGTTTGAAGTGAAAAGCTAACATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTAAATCACAGTGTAGAGTTTGAAGTGAAAAGCTAACATAGTA  400

seq1  AAATCCTTATTAGAATGTTCAGTTCCAGCTGAGTGTGGTAGCATGCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTATTAGAATGTTCAGTTCCAGCTGAGTGTGGTAGCATGCTTGG  450

seq1  ACTCTGGGCACTCAGAAGGCCATGGCAAGAGAATGGCTGCAAAGTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGCACTCAGAAGGCCATGGCAAGAGAATGGCTGCAAAGTTGGAA  500

seq1  GCTACCTAGGGCGACCTAGCAAGATAGCAAGGCGTTGTTAAATAACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTAGGGCGACCTAGCAAGATAGCAAGGCGTTGTTAAATAACACAA  550

seq1  GACAAAACAAATGAAACCCCTCAAACAAATGGATAGAAAACTTTAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACAAATGAAACCCCTCAAACAAATGGATAGAAAACTTTAGAACT  600

seq1  TCATTTCTAATAGCAATAAACATAAGTATTAAAAACCATTGAATTAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAATAGCAATAAACATAAGTATTAAAAACCATTGAATTAATAA  650

seq1  TAAAATGTTAACCTGAAAAAAAATTAAAAAAGAAATCAAACATATTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTAACCTGAAAAAAAATTAAAAAAGAAATCAAACATATTTAGT  700

seq1  TATATAAAAATGTAAAAGATATTAATTCTGAATACAAATTTGTGTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAAATGTAAAAGATATTAATTCTGAATACAAATTTGTGTTTTTA  750

seq1  TTTACTTGTTATTAGAACATAGCACATGTTTATGCTATTTGGATCCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTTATTAGAACATAGCACATGTTTATGCTATTTGGATCCATTA  800

seq1  AGTATTAATGAGAATAATTTATTCCTGAAGTAAAATAATTTTAACATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAATGAGAATAATTTATTCCTGAAGTAAAATAATTTTAACATCTA  850

seq1  AGTCCTCGTAAGCTC-TGTAAGAAAATAAACCTCAAAGCATTTTACATTA  899
      ||||||||||||||| |||||||||||||| ||||||||| |||||||||
seq2  AGTCCTCGTAAGCTCTTGTAAGAAAATAAA-CTCAAAGCA-TTTACATTA  898

seq1  TAAAATACATTTGGACAAAATATATTAAATCAGTAGAGTTGAGTGTAAGT  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAATACATTTGGAC-AAATATATTAAATCAGTAGAGTTGAGTGTAAGT  947

seq1  AGTTCAGAAGTAGAGGGATGGACGTCAGCGGTGTGTGTGGGGCTCTCCCA  999
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AGTTCAGAAGTAGAGGGATGGACGTCAGCGTGGTGTGTGGGGCTCTCCCA  997

seq1  GTACCTTAAGCAAACGATGCTTGGCTCTGTTTAAATGAGGTTGTAACACT  1049
      | ||||  ||||||||||||||||||||| |||||||||| ||| |||||
seq2  G-ACCT--AGCAAACGATGCTTGGCTCTG-TTAAATGAGG-TGT-ACACT  1041

seq1  TTATTTTAAAAAATTCTAGCATTAGCATTATGCTTCACGTCATATCTTCT  1099
      |||||||  | ||||||||||| | ||||| ||||||||||||| | |||
seq2  TTATTTT--ATAATTCTAGCATGA-CATTAGGCTTCACGTCATA-CCTCT  1087

seq1  ATACTTGTTCAGACTTTTAGTAAAACATTTTC  1131
      |||| || || |||  | |||||||| |||||
seq2  ATAC-TGATC-GAC--TCAGTAAAAC-TTTTC  1114

seq1: chr19_37793934_37795033
seq2: B6Ng01-018A04.g_69_1151 (reverse)

seq1  TGGCAAATGTCTCAAGGCAAACAGGAGGGCTAAGTGACAACCAAACTGTT  50
      |||||||| || ||| |||||||| |||||| |||||||||  |||||| 
seq2  TGGCAAATTTC-CAA-GCAAACAGAAGGGCT-AGTGACAAC--AACTGT-  44

seq1  TCAATCTCCTGGGAGGGACAGAGGAGATGGGTGGAGACGTCTTTCCCAGA  100
         ||||||||||| ||||||||||||  ||| ||||||||||| |||| 
seq2  --CATCTCCTGGGA-GGACAGAGGAGAATGGT-GAGACGTCTTTACCAG-  89

seq1  ATTGAAAGGCAGAGAGGATGGGGTTGGGGCTCCCACCAGGAAGGTGCACA  150
      ||||||| ||||||||||||||| |||||||||||||| ||| |||||||
seq2  ATTGAAA-GCAGAGAGGATGGGG-TGGGGCTCCCACCA-GAAAGTGCACA  136

seq1  CGGAGCCTGGAGCAGAAGGAAGGAAGGCTTCCGGTTCCCAGTCTCCAGGG  200
      |||||||| |||||||||  | ||| ||||||||||||||||||||||||
seq2  CGGAGCCT-GAGCAGAAG--AAGAAAGCTTCCGGTTCCCAGTCTCCAGGG  183

seq1  CTGCTTGGGGGTGGCTCATCTGCCTTCCACAAGGCAGATAGGGCACCCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGGGGTGGCTCATCTGCCTTCCACAAGGCAGATAGGGCACCCCG  233

seq1  GAGGCAGCGAGTGAGCAACAGTGCGAAGGGAGGAGCTGGGGCTTTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCGAGTGAGCAACAGTGCGAAGGGAGGAGCTGGGGCTTTCTCCT  283

seq1  TCCAGGAGAATGTTCAGAGGCTGTGGGGCGTGGAGCTGGAGTCTGATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGAATGTTCAGAGGCTGTGGGGCGTGGAGCTGGAGTCTGATCTT  333

seq1  TGCTCATCAGATCCACCAGAAGGCCACTGGCCATGCTTTGTCCATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCAGATCCACCAGAAGGCCACTGGCCATGCTTTGTCCATTTTTT  383

seq1  TTTTGCTGAAAATAAGCTTATAGATTTATCTTTATTTCTTAAGACAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGAAAATAAGCTTATAGATTTATCTTTATTTCTTAAGACAGGCT  433

seq1  CTCTCTGTTTTAGTTCTGGTTGTCCCAGAACTCGATAGGCTACACCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTTTAGTTCTGGTTGTCCCAGAACTCGATAGGCTACACCAGGC  483

seq1  TGGCAAACTCAAACTCAAAGAGATCTATTTGCCTCTGCCTCCCCAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAACTCAAACTCAAAGAGATCTATTTGCCTCTGCCTCCCCAGTGCT  533

seq1  GGGGTTAAAGGCATGCACCACCGTTCCCAGCCTCAGATTTAATCTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTAAAGGCATGCACCACCGTTCCCAGCCTCAGATTTAATCTTTGAG  583

seq1  AAGGTGTACTTTTTTGTATTGTATATGCATGTGTTACATGGTATACATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTACTTTTTTGTATTGTATATGCATGTGTTACATGGTATACATCA  633

seq1  TATGAATGTCTCCCCTGTATGTGTCATTGTGAACTACACCTGTGCCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTCTCCCCTGTATGTGTCATTGTGAACTACACCTGTGCCTGCT  683

seq1  GTCCTCAGAGCTCAGAAGGTGAAGCTGGCGTTCCTGGAACTGGACATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGAGCTCAGAAGGTGAAGCTGGCGTTCCTGGAACTGGACATGTG  733

seq1  ATGGTTGTGAGCCACCATGTGGGTACTGAGAAACAGCCCTTTCTCTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCACCATGTGGGTACTGAGAAACAGCCCTTTCTCTTAAT  783

seq1  CACTGAGCCATATCTCCAGACCTAGATATTTTTTTCTTAAATGGGTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATATCTCCAGACCTAGATATTTTTTTCTTAAATGGGTCACA  833

seq1  CTCTTGCATCATATCAATGACATTGTTTTTTTTTTTTTTCCTTGTGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATCATATCAATGACATTGTTTTTTTTTTTTTTCCTTGTGGTGT  883

seq1  GAGACTGAACGTCACCTGTCCTTAGCATATGCTCCACTCTACGACTAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAACGTCACCTGTCCTTAGCATATGCTCCACTCTACGACTAGAC  933

seq1  CTCTAACACTGGAAACTTTTGCCTGATGCAAAGCCACCAAGGTCTTCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACACTGGAAACTTTTGCCTGATGCAAAGCCACCAAGGTCTTCTCC  983

seq1  TAGAGGCTTTGCTCTTTTTTAAATTAACTAAGTAATTTTTGAGTCAACGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCTTTGCTCTTTTTTAAATTAACTAAGTAATTTTTGAGTCAACGA  1033

seq1  CTCTCATAGCTTAGGTTGACCTTAAGCTGACAAAGAGGTGAACAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATAGCTTAGGTTGACCTTAAGCTGACAAAGAGGTGAACAGAATTC  1083