BAC Information

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BAC

Clone NameB6Ng01-020E05
Chromosome19 (Build37)
Map Location 43,545,646 - 43,635,743
singlet/doubletdoublet
Overlap geneCnnm1, Got1
Upstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
Downstream geneNkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020E05.bB6Ng01-020E05.g
ACCDH853113DH853114
length1,1011,088
definitionDH853113|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E05, 5' end.DH853114|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,545,646 - 43,546,773)(43,634,633 - 43,635,743)
sequence
gaattcctaatcctcccgtttgcaagtatttattttgaaaaatgccaagg
tgccaggcgtggtggtgcacacctttaatcccagcacttggaaggcaaag
acaggcagatctctgagttcaaggccagcctgctctacacagtgagttcc
atgacagtcaggactacacagagaaaccctgcagggttgactgagaatcc
acaggtgcacataacagtaacagctgcataaatgcagctctacactcatg
gtagttattgctatcattgacaatgaatgctagttatcactgtcaccagt
ggtgaattcaacaagagcaggttctatctcagccagacccagaaatggtc
tcgtctgggacactgagtcagtaaagctgtttactatgctctggcttact
ggtgctttaggcctgtgtcctcgaaaggcagctacagtgtagcaggagag
cttcgttattcaggaccacgtgctgctttagggctgataaagctgtgaat
tcactgcaaggggcttctgaagtcggagcttgtgtttctgtaaaggaaat
ctaggcagaattaacacttccctgtgatcatgtgagtccatttgtccgtg
cccacaaaagtccttggggtctgagggaacctggaagacctggaagtgcc
catcccagcctcagtaagttccttaccctccttctctctccaggggaaag
tggaagtggaggttggtaaggaaggccttcgctttgagaacggagccttt
acctactatggtgttccagccatcatgaccagcgcttgctcagtattcta
gttcttaagccgggagtttatcaggaagcagtggggcccaccaagaaaga
tctagcggaagtcacgactcttgtgttgactcctgttaaacacttcaaat
aagctgttcgcttccttggctcggtttcctctgtgcaaagacggataaaa
taactcagatttgtttgctttaagagaagaaaactgagtgggggtgggaa
aggtatcttgtatcagtgctgggtggagacccggctttccgaaagaaggg
acgtgttccactctcctaactaccctctcctgcctgattctggcagggct
a
gaattccacagcaaagagataattatttaatgaaactatctttttttttg
tttgtttctttttttttttttaaaaacaactgtcaaagtaactcacccta
aaaccaaaagaggcgctttgaagtgaaatcagggcgcacacacccagatc
gaaaggcctctagagtttttaacgtgggtgggatctgagttgctgacact
atgtatcaggagagcagtggttcccagccaccaccggatgggttcttttt
caaatgtgtttctgcaatcagtcatttatcttaggttgtcagcctctgtt
cctgtctatagttctcaattcaatgggcatgctggactgttaggatgacc
aataacattccagaaatttctgtgatgtcagcaaatgtaaatcataatga
ctggtctgatacacccagggccagtgaatggagctgataccattctattc
aaaaggaaagagacttgactttcagttaacccagtcaacccaaccataga
tagggagttgggccttcatgctatcaaacttaagacacgaaccattatta
actgattttgtaattgcctcaggggtccaagtctctgagaaaaggaactt
caacatttgaatcttctgaaaacttccagcttttgataactgttggaagt
tttagaattgactacttttgaatctctaagctgcacagccagtggcagca
ttcaagcttctgttcccactgtgtgcctgtggcagacatctctaatccat
caccgcattcttttccactgagccatgctcttaatacagcactccaagca
accaatgaatcagatgctaaaaacaaaattagcttcccttttcctgcttg
gccctgcttttgtaggtgatgtgttcatgaggcaagtatgagagagaggc
tcagagttcccttaatgaagacagcagatacagcaatcagatctagaggt
agaaaacgtgggataacatgtgacttctaaagctgacaaatggctcgtgg
tagcacaagataattggtccgagcacactcatgttcagtggctcagccac
gtttattccagctcaggtctatatacagaccatgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43545646_43546773
seq2: B6Ng01-020E05.b_47_1147

seq1  GAATTCCTAATCCTCCCGTTTGCAAGTATTTATTTTGAAAAATGCCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATCCTCCCGTTTGCAAGTATTTATTTTGAAAAATGCCAAGG  50

seq1  TGCCAGGCGTGGTGGTGCACACCTTTAATCCCAGCACTTGGAAGGCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCGTGGTGGTGCACACCTTTAATCCCAGCACTTGGAAGGCAAAG  100

seq1  ACAGGCAGATCTCTGAGTTCAAGGCCAGCCTGCTCTACACAGTGAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGATCTCTGAGTTCAAGGCCAGCCTGCTCTACACAGTGAGTTCC  150

seq1  ATGACAGTCAGGACTACACAGAGAAACCCTGCAGGGTTGACTGAGAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTCAGGACTACACAGAGAAACCCTGCAGGGTTGACTGAGAATCC  200

seq1  ACAGGTGCACATAACAGTAACAGCTGCATAAATGCAGCTCTACACTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCACATAACAGTAACAGCTGCATAAATGCAGCTCTACACTCATG  250

seq1  GTAGTTATTGCTATCATTGACAATGAATGCTAGTTATCACTGTCACCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATTGCTATCATTGACAATGAATGCTAGTTATCACTGTCACCAGT  300

seq1  GGTGAATTCAACAAGAGCAGGTTCTATCTCAGCCAGACCCAGAAATGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTCAACAAGAGCAGGTTCTATCTCAGCCAGACCCAGAAATGGTC  350

seq1  TCGTCTGGGACACTGAGTCAGTAAAGCTGTTTACTATGCTCTGGCTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGGGACACTGAGTCAGTAAAGCTGTTTACTATGCTCTGGCTTACT  400

seq1  GGTGCTTTAGGCCTGTGTCCTCGAAAGGCAGCTACAGTGTAGCAGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTTAGGCCTGTGTCCTCGAAAGGCAGCTACAGTGTAGCAGGAGAG  450

seq1  CTTCGTTATTCAGGACCACGTGCTGCTTTAGGGCTGATAAAGCTGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTTATTCAGGACCACGTGCTGCTTTAGGGCTGATAAAGCTGTGAAT  500

seq1  TCACTGCAAGGGGCTTCTGAAGTCGGAGCTTGTGTTTCTGTAAAGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAAGGGGCTTCTGAAGTCGGAGCTTGTGTTTCTGTAAAGGAAAT  550

seq1  CTAGGCAGAATTAACACTTCCCTGTGATCATGTGAGTCCATTTGTCCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGAATTAACACTTCCCTGTGATCATGTGAGTCCATTTGTCCGTG  600

seq1  CCCACAAAAGTCCTTGGGGTCTGAGGGAACCTGGAAGACCTGGAAGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAAGTCCTTGGGGTCTGAGGGAACCTGGAAGACCTGGAAGTGCC  650

seq1  CATCCCAGCCTCAGTAAGTTCCTTACCCTCCTTCTCTCTCCAGGGGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGCCTCAGTAAGTTCCTTACCCTCCTTCTCTCTCCAGGGGAAAG  700

seq1  TGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTT  750

seq1  ACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAGGTATTCT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCA-GTATTCT  799

seq1  AGTTCTTAAGCCGGGAGTTTATCAGGGAAGCAGTGGGGCCCACCAAGAAA  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTTCTTAAGCCGGGAGTTTATCA-GGAAGCAGTGGGGCCCACCAAGAAA  848

seq1  GATCTAGGCGGAAGTCACGACTCTTGTGTTGACTCCTGTTAAACACCTTC  900
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GATCTA-GCGGAAGTCACGACTCTTGTGTTGACTCCTGTTAAACA-CTTC  896

seq1  AAAATAAGCTGTTTCGCTTCCTTGGCTCGGGTTTCCTTCTGTGCAAAGAC  950
       |||||||||| |||||||||||||||| ||||||| |||||||||||||
seq2  -AAATAAGCTG-TTCGCTTCCTTGGCTC-GGTTTCC-TCTGTGCAAAGAC  942

seq1  GGCATAAAAATAACTTCAGATTTTGTTTGGCTTTAAGAGGAAGAAAACTG  1000
      || || |||||||| ||||| ||||||| ||||||||| |||||||||||
seq2  GG-AT-AAAATAAC-TCAGA-TTTGTTT-GCTTTAAGA-GAAGAAAACTG  986

seq1  AGGTGGGGGTGGAAAAGGTAATCTTGTAGCAAGTGCTGGGGTGGAGACCC  1050
      | |||||||||| |||||| |||||||| | |||||| ||||||||||||
seq2  A-GTGGGGGTGGGAAAGGT-ATCTTGTATC-AGTGCT-GGGTGGAGACCC  1032

seq1  GGCTTTTCCGAAAGAAAGGACACGTTGTTTCACGCTCTTCCCTACTACCC  1100
      ||| |||||||||||| ||||    |||| ||| |   |||  |||||||
seq2  GGC-TTTCCGAAAGAAGGGAC---GTGTTCCACTC---TCCTAACTACCC  1075

seq1  TCCTTCCTGCCTGATTCCTGCAGGGCTA  1128
      ||  |||||||||||||  |||||||||
seq2  TC--TCCTGCCTGATTCTGGCAGGGCTA  1101

seq1: chr19_43634633_43635743
seq2: B6Ng01-020E05.g_67_1154 (reverse)

seq1  TTGTGCATGTGTCTGTATATGAGACCCTTGAAGCTGGAATAACACGTGGC  50
      |||| |||| |||||||||| |||||  || ||||||||||| |||||||
seq2  TTGT-CATG-GTCTGTATAT-AGACC--TG-AGCTGGAATAA-ACGTGGC  43

seq1  CGTGAGCCACTG-ACATGGGTGCTGCTCGGGACCCAATGTATCTGTGTGC  99
        |||||||||| ||||| ||| |||||||   ||||| ||||| |||||
seq2  --TGAGCCACTGAACATGAGTG-TGCTCGG--ACCAAT-TATCT-TGTGC  86

seq1  CTAACCACTGAGCCATCTGTCCAGCTTTGAGAGGTCACATGTTTATTCCC  149
         ||||| ||||||| ||| ||||||| ||| ||||||||||   ||||
seq2  --TACCAC-GAGCCATTTGT-CAGCTTT-AGAAGTCACATGTT--ATCCC  129

seq1  ACGTATTTCTACCTCTTAGATCCTTGATTGCCTGTATCTGCTGTCTTCAT  199
      |||| |||||||||| ||||||  |||||| |||||||||||||||||||
seq2  ACGT-TTTCTACCTC-TAGATC--TGATTG-CTGTATCTGCTGTCTTCAT  174

seq1  TAAGGGAACTCTGAGCCTCTCTCTCATACTTGCCTCATGAACACATCACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAACTCTGAGCCTCTCTCTCATACTTGCCTCATGAACACATCACC  224

seq1  TACAAAAGCA-GGCCAAGCAGG-AAAGGGAAGCTAATTTTGTTTTTAGCA  297
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TACAAAAGCAGGGCCAAGCAGGAAAAGGGAAGCTAATTTTGTTTTTAGCA  274

seq1  TCTGATTCATTGGTTGCTTGGAGTGCTGTATTAAGAGCATGGCTCAGTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCATTGGTTGCTTGGAGTGCTGTATTAAGAGCATGGCTCAGTGG  324

seq1  AAAAGAATGCGGTGATGGATTAGAGATGTCTGCCACAGGCACACAGTGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGCGGTGATGGATTAGAGATGTCTGCCACAGGCACACAGTGGG  374

seq1  AACAGAAGCTTGAATGCTGCCACTGGCTGTGCAGCTTAGAGATTCAAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGCTTGAATGCTGCCACTGGCTGTGCAGCTTAGAGATTCAAAAG  424

seq1  TAGTCAATTCTAAAACTTCCAACAGTTATCAAAAGCTGGAAGTTTTCAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATTCTAAAACTTCCAACAGTTATCAAAAGCTGGAAGTTTTCAGA  474

seq1  AGATTCAAATGTTGAAGTTCCTTTTCTCAGAGACTTGGACCCCTGAGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAATGTTGAAGTTCCTTTTCTCAGAGACTTGGACCCCTGAGGCA  524

seq1  ATTACAAAATCAGTTAATAATGGTTCGTGTCTTAAGTTTGATAGCATGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAATCAGTTAATAATGGTTCGTGTCTTAAGTTTGATAGCATGAA  574

seq1  GGCCCAACTCCCTATCTATGGTTGGGTTGACTGGGTTAACTGAAAGTCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAACTCCCTATCTATGGTTGGGTTGACTGGGTTAACTGAAAGTCAA  624

seq1  GTCTCTTTCCTTTTGAATAGAATGGTATCAGCTCCATTCACTGGCCCTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTCCTTTTGAATAGAATGGTATCAGCTCCATTCACTGGCCCTGG  674

seq1  GTGTATCAGACCAGTCATTATGATTTACATTTGCTGACATCACAGAAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCAGACCAGTCATTATGATTTACATTTGCTGACATCACAGAAATT  724

seq1  TCTGGAATGTTATTGGTCATCCTAACAGTCCAGCATGCCCATTGAATTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGTTATTGGTCATCCTAACAGTCCAGCATGCCCATTGAATTGA  774

seq1  GAACTATAGACAGGAACAGAGGCTGACAACCTAAGATAAATGACTGATTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATAGACAGGAACAGAGGCTGACAACCTAAGATAAATGACTGATTG  824

seq1  CAGAAACACATTTGAAAAAGAACCCATCCGGTGGTGGCTGGGAACCACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACATTTGAAAAAGAACCCATCCGGTGGTGGCTGGGAACCACTG  874

seq1  CTCTCCTGATACATAGTGTCAGCAACTCAGATCCCACCCACGTTAAAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGATACATAGTGTCAGCAACTCAGATCCCACCCACGTTAAAAAC  924

seq1  TCTAGAGGCCTTTCGATCTGGGTGTGTGCGCCCTGATTTCACTTCAAAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCCTTTCGATCTGGGTGTGTGCGCCCTGATTTCACTTCAAAGC  974

seq1  GCCTCTTTTGGTTTTAGGGTGAGTTACTTTGACAGTTGTTTTTAAAAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTTGGTTTTAGGGTGAGTTACTTTGACAGTTGTTTTTAAAAAAA  1024

seq1  AAAAAAGAAACAAACAAAAAAAAAGATAGTTTCATTAAATAATTATCTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAACAAACAAAAAAAAAGATAGTTTCATTAAATAATTATCTCT  1074

seq1  TTGCTGTGGAATTC  1111
      ||||||||||||||
seq2  TTGCTGTGGAATTC  1088