BAC Information

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BAC

Clone NameB6Ng01-020G17
Chromosome19 (Build37)
Map Location 26,239,893 - 26,347,324
singlet/doubletdoublet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020G17.bB6Ng01-020G17.g
ACCDH853222DH853223
length1,192921
definitionDH853222|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G17, 5' end.DH853223|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,239,893 - 26,241,105)(26,346,736 - 26,347,324)
sequence
gaattctgttctcaaagccaccttacaaagttaggcttatttttttttct
ggctttataggcaataaagctgatttgtgaagaggctaagaggattccag
cttaaagttttagtgaaggatttccagaactaaattgaaaattcaatttt
ttggggtcaaactttagaactttgtctcttgggttttcacaaaacatttt
atgccattgttaggccataaatcaagccaattaggcacaattaatatttt
gttgagaagagatagaaaataagtaaatcctaaaacactcactatggttg
ctgagctgtgcaaaagcatttttagtgattatggtcacagacatgtagca
tgcacttcttattcagctggtattaccaacaacaactactactactacta
ctactactactactactactactactactaccaccattatcaataataat
aataacagaaattattatgtgagtccctgtgatactccacccacttcatc
atccatgtcttaggtacaaaccataggagcttctaagcatggccataaaa
taacccttgttacctgtccttatttgaacaatactaagagggacctgaaa
ggagccaggaatttctactaaatctataagataaaatgaacttgttcatt
tttgtgcttctctgaaacttggaagaagtgaagtccatgatgcctatggt
gttgccatccagtaaagaggcatccaccaggaaacagaaacaagcgaggg
gatgtggaacagctacaaggatgctgcccgttcatgggccaagcgaagct
ttgatttctgaagagtttacagggtttaagttatcctgtattttcatgtg
tatgaaggtcaaaatggtaaagggtaacatcttttacccttttccatttt
cgaaagtgactctaagatttcatctttctcaaatcagatcaatttctttg
ctattttcagtacaaagcatgaacctaagcattgggtagcacatcttggg
aagtcgagtttattgggctattttataaataatagtatttcatcactctc
acatcacatacaattgcacatcaatgggtgcatgcatcagtcttgcccta
actctccattccctatttagtgggaatttcagtgacaccattttacccta
tattttccttcttatttatggaaatgcatgaatacattctac
gaattccaactttcattgacttagccccaagaagccaaacaagagaatgt
tattcttagtagtgaaagaaagcagggctggtgcatccagagatggtttg
tctcaagttatgactttataatgacatgaaaatgacatcattcaaaaata
agtgttccttgtaacttgaactgtgagcttttcctgggcaagctggtgca
tactctcttggcattggaagagacaacttgctgcatcccatagtaagcca
tgtaaacaccatggagcctattcatgctacacagtttagtgtggatggtg
ctttgtgttgtttgatgttgacatatttgacaaatcctatgagatgcttt
gtgttcaattattaagtaggcattgtgttttaggacttcatgaaactgta
aagtaatgtttaagtgttctggaaatatttaagttagcgtaagtttaagt
tctattgttcaggaggtggggccacctaactgcattttctacttaaatta
gtttcaatttaccattttataaggaagcaatctcactgcaagttgcaaag
cacacggctggcaaactaaaacttcatccattaaaattaaaactcaatcc
attaaaactaaaaataaatcagagatctttttaaacaaacataagctaag
ataatttaccattagcaaatctacttccaaaagaaatatgttacaatata
ggcaaaaaggaaaatatcttagaagaacataaaaataaataagtgaacta
caaaagaaagggcagatatgtataaatataaatatatcctgattgaacta
tggtgggagtgatagcttgtattatataaaacatgcatacattaaagaca
catgataatatacacagagatagaggcatggatagtaaatgctaattaca
aaggcagaaatagtattattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26239893_26241105
seq2: B6Ng01-020G17.b_35_1226

seq1  GAATTCTGTTCTCAAAGCCACCTTACAAAGTTAGGCTTATTTTTTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTCAAAGCCACCTTACAAAGTTAGGCTTATTTTTTTTTCT  50

seq1  GGCTTTATAGGCAATAAAGCTGATTTGTGAAGAGGCTAAGAGGATTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATAGGCAATAAAGCTGATTTGTGAAGAGGCTAAGAGGATTCCAG  100

seq1  CTTAAAGTTTTAGTGAAGGATTTCCAGAACTAAATTGAAAATTCAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTTTAGTGAAGGATTTCCAGAACTAAATTGAAAATTCAATTTT  150

seq1  TTGGGGTCAAACTTTAGAACTTTGTCTCTTGGGTTTTCACAAAACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCAAACTTTAGAACTTTGTCTCTTGGGTTTTCACAAAACATTTT  200

seq1  ATGCCATTGTTAGGCCATAAATCAAGCCAATTAGGCACAATTAATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTGTTAGGCCATAAATCAAGCCAATTAGGCACAATTAATATTTT  250

seq1  GTTGAGAAGAGATAGAAAATAAGTAAATCCTAAAACACTCACTATGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAGAGATAGAAAATAAGTAAATCCTAAAACACTCACTATGGTTG  300

seq1  CTGAGCTGTGCAAAAGCATTTTTAGTGATTATGGTCACAGACATGTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGTGCAAAAGCATTTTTAGTGATTATGGTCACAGACATGTAGCA  350

seq1  TGCACTTCTTATTCAGCTGGTATTACCAACAACAACTACTACTACTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTCTTATTCAGCTGGTATTACCAACAACAACTACTACTACTACTA  400

seq1  CTACTACTACTACTACTACTACTACTACTACCACCATTATCAATAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTACTACTACTACTACTACTACTACCACCATTATCAATAATAAT  450

seq1  AATAACAGAAATTATTATGTGAGTCCCTGTGATACTCCACCCACTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGAAATTATTATGTGAGTCCCTGTGATACTCCACCCACTTCATC  500

seq1  ATCCATGTCTTAGGTACAAACCATAGGAGCTTCTAAGCATGGCCATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTCTTAGGTACAAACCATAGGAGCTTCTAAGCATGGCCATAAAA  550

seq1  TAACCCTTGTTACCTGTCCTTATTTGAACAATACTAAGAGGGACCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTGTTACCTGTCCTTATTTGAACAATACTAAGAGGGACCTGAAA  600

seq1  GGAGCCAGGAATTTCTACTAAATCTATAAGATAAAATGAACTTGTTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGAATTTCTACTAAATCTATAAGATAAAATGAACTTGTTCATT  650

seq1  TTTGTGCTTCTCTGAAACTTGGAAGAAGTGAAGTCCATGATGCCTATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTTCTCTGAAACTTGGAAGAAGTGAAGTCCATGATGCCTATGGT  700

seq1  GTTGCCATCCAGTAAAGAGGCATCCACCAGGAAACAGAAACAAGCGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATCCAGTAAAGAGGCATCCACCAGGAAACAGAAACAAGCGAGGG  750

seq1  GATGTGGAACAGCTACAAGGATGCTGCCCGTTCATGGGCCAAGCGAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAACAGCTACAAGGATGCTGCCCGTTCATGGGCCAAGCGAAGCT  800

seq1  TTGATTTCTGAAGAGTTTACAAGG-TTAAGTTATCCTGTATTTTCATGTG  849
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  TTGATTTCTGAAGAGTTTACAGGGTTTAAGTTATCCTGTATTTTCATGTG  850

seq1  TATGAAGGTCAAAATGGTAAAGGGTAACATCTTTTACCCTTTTCCATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGTCAAAATGGTAAAGGGTAACATCTTTTACCCTTTTCCATTTT  900

seq1  CGAAAGTGACTCTAAGATTTCATCTTTCTCATATCAGATCAATTTCTTTG  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGAAAGTGACTCTAAGATTTCATCTTTCTCAAATCAGATCAATTTCTTTG  950

seq1  CTTATTTTCAGTACAAAGCATGAACCTAAGCATTGGGGTAGCACAATCTT  999
      | |||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  C-TATTTTCAGTACAAAGCATGAACCTAAGCATT-GGGTAGCAC-ATCTT  997

seq1  GGGAAGTCGAGTTTATTGGGCTATTTTATAAATAAATAGTAATTTCATTC  1049
      ||||||||||||||||||||||||||||||||| |||||| |||||| ||
seq2  GGGAAGTCGAGTTTATTGGGCTATTTTATAAAT-AATAGT-ATTTCA-TC  1044

seq1  ACTCTCACATCACATACAAATTGCACATCATTGTGTGCATGTCATACAGT  1099
      ||||||||||||||||| |||||||||||| || ||||||| ||| ||||
seq2  ACTCTCACATCACATAC-AATTGCACATCAATGGGTGCATG-CAT-CAGT  1091

seq1  CTTGCCCTATACTCTCCCATTCTCTATTTAGTTGGGAAATGTCATGTGAC  1149
      ||||||||| ||||| |||||| |||||||||  || ||| ||| |||||
seq2  CTTGCCCTA-ACTCT-CCATTCCCTATTTAGT--GGGAATTTCA-GTGAC  1136

seq1  ACCATTTTACCCTATATTTTCCCCTTCTTTATTTAGTTGGGAAATGGCAT  1199
      ||||||||||||||||||||  ||||| |||||||    |||||| ||||
seq2  ACCATTTTACCCTATATTTT--CCTTC-TTATTTA---TGGAAAT-GCAT  1179

seq1  GGAGTACATTCTAC  1213
       || ||||||||||
seq2  -GAATACATTCTAC  1192

seq1: chr19_26346736_26347324
seq2: B6Ng01-020G17.g_64_652 (reverse)

seq1  TAATTTTAATGGATGAAGTTTTAGTTTGCCAGCCGTGTGCTTTGCAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAATGGATGAAGTTTTAGTTTGCCAGCCGTGTGCTTTGCAACTT  50

seq1  GCAGTGAGATTGCTTCCTTATAAAATGGTAAATTGAAACTAATTTAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGATTGCTTCCTTATAAAATGGTAAATTGAAACTAATTTAAGTA  100

seq1  GAAAATGCAGTTAGGTGGCCCCACCTCCTGAACAATAGAACTTAAACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCAGTTAGGTGGCCCCACCTCCTGAACAATAGAACTTAAACTTA  150

seq1  CGCTAACTTAAATATTTCCAGAACACTTAAACATTACTTTACAGTTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACTTAAATATTTCCAGAACACTTAAACATTACTTTACAGTTTCAT  200

seq1  GAAGTCCTAAAACACAATGCCTACTTAATAATTGAACACAAAGCATCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTAAAACACAATGCCTACTTAATAATTGAACACAAAGCATCTCA  250

seq1  TAGGATTTGTCAAATATGTCAACATCAAACAACACAAAGCACCATCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTGTCAAATATGTCAACATCAAACAACACAAAGCACCATCCACA  300

seq1  CTAAACTGTGTAGCATGAATAGGCTCCATGGTGTTTACATGGCTTACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGTGTAGCATGAATAGGCTCCATGGTGTTTACATGGCTTACTAT  350

seq1  GGGATGCAGCAAGTTGTCTCTTCCAATGCCAAGAGAGTATGCACCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCAGCAAGTTGTCTCTTCCAATGCCAAGAGAGTATGCACCAGCTT  400

seq1  GCCCAGGAAAAGCTCACAGTTCAAGTTACAAGGAACACTTATTTTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAAAAGCTCACAGTTCAAGTTACAAGGAACACTTATTTTTGAAT  450

seq1  GATGTCATTTTCATGTCATTATAAAGTCATAACTTGAGACAAACCATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATTTTCATGTCATTATAAAGTCATAACTTGAGACAAACCATCTC  500

seq1  TGGATGCACCAGCCCTGCTTTCTTTCACTACTAAGAATAACATTCTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCACCAGCCCTGCTTTCTTTCACTACTAAGAATAACATTCTCTTG  550

seq1  TTTGGCTTCTTGGGGCTAAGTCAATGAAAGTTGGAATTC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCTTGGGGCTAAGTCAATGAAAGTTGGAATTC  589