BAC Information

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BAC

Clone NameB6Ng01-020N22
Chromosome19 (Build37)
Map Location 45,286,792 - 45,391,207
singlet/doubletdoublet
Overlap geneLbx1
Upstream geneScd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1
Downstream geneBtrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N22.bB6Ng01-020N22.g
ACCDH853543DH853544
length969362
definitionDH853543|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N22, 5' end.DH853544|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,286,792 - 45,287,636)(45,390,846 - 45,391,207)
sequence
gaattccacagaacatttcaaacgcaaactcctacaaggttatcataacc
tgcccattcaggaaggacaaatatcaatattcaccatcacagggcaatcc
cggaatcatgtagacttgacaccaaatagatacatggctgtatgaagcca
ctttccaacagcgagctgcttagtagtctggcaacctagcagcagcctgg
gtggcccttgggatgcacatgggatgcaggaaggtgatgtcgcaagaact
ctcatcaacaggaacaaatagttaccaggaacaaagctgcaggcctgaag
caaaaagaaaagagagattaaatgtcaggcagagccttgtcttaacaaag
gttaacgtcaccagcagtgagtcatattggttgtatatcctccctgatac
ctgtgtccctggtgggatgtggtgagaagggctcttcacctctgtggtcc
tccctaacccagtctaggcacaaggaaaccaccaggcaagtccaagatac
atctgtgactctcggtcctaattgtcaacttgtctgggttggaaaccaat
gaaaagagtccccttgtgagggattgtcatggttagattatctcaagtgg
gaagacccattctcggtgtagatggcagcccaaacagtaagaaatgtagc
caggaaccgactaatgtcattagtcctagcccttgggagatagatgcaga
ttgttctcttgagtccaaggacagcctgatctacatactgagttccagga
cagccagggattcattgtgagagcctgtctcaaaacaagctaacaccaga
gatggaggacagaggctttgctttcacctgctagctctcactattgctgg
agtgttcatccaccctgtcgctgctgcatctttcactgatgttagaaccc
tgccgctagtctttgctactttgtgggttgttcttttccccacctaattc
tccaggtttcacctcctcc
attaatgctaagctgttcgatgaaggtcagaaagatgaaaggttatttgc
ctatttagacaggctttaactacgcagggttcccctgcttgagcctctct
attgctgggattacaggaatatgcctcagcagccatcttggggctttctc
cttcctgaaagcttttcagtttttcttgggagaaagaggtggggttgacc
ttggctgtgactctatcataaaagagccggataaaattcagcttctgata
aatacgagtaaatagtatcaatacatcctttgcactatttcaggtatact
tacatttatttatgttatgtgcatgtgtgggtgtgcctgagtatattggg
gaggaaagggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45286792_45287636
seq2: B6Ng01-020N22.b_45_889

seq1  GAATTCCACAGAACATTTCAAACGCAAACTCCTACAAGGTTATCATAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAACATTTCAAACGCAAACTCCTACAAGGTTATCATAACC  50

seq1  TGCCCATTCAGGAAGGACAAATATCAATATTCACCATCACAGGGCAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTCAGGAAGGACAAATATCAATATTCACCATCACAGGGCAATCC  100

seq1  CGGAATCATGTAGACTTGACACCAAATAGATACATGGCTGTATGAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATCATGTAGACTTGACACCAAATAGATACATGGCTGTATGAAGCCA  150

seq1  CTTTCCAACAGCGAGCTGCTTAGTAGTCTGGCAACCTAGCAGCAGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAACAGCGAGCTGCTTAGTAGTCTGGCAACCTAGCAGCAGCCTGG  200

seq1  GTGGCCCTTGGGATGCACATGGGATGCAGGAAGGTGATGTCGCAAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTTGGGATGCACATGGGATGCAGGAAGGTGATGTCGCAAGAACT  250

seq1  CTCATCAACAGGAACAAATAGTTACCAGGAACAAAGCTGCAGGCCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAACAGGAACAAATAGTTACCAGGAACAAAGCTGCAGGCCTGAAG  300

seq1  CAAAAAGAAAAGAGAGATTAAATGTCAGGCAGAGCCTTGTCTTAACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAAAGAGAGATTAAATGTCAGGCAGAGCCTTGTCTTAACAAAG  350

seq1  GTTAACGTCACCAGCAGTGAGTCATATTGGTTGTATATCCTCCCTGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACGTCACCAGCAGTGAGTCATATTGGTTGTATATCCTCCCTGATAC  400

seq1  CTGTGTCCCTGGTGGGATGTGGTGAGAAGGGCTCTTCACCTCTGTGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCCTGGTGGGATGTGGTGAGAAGGGCTCTTCACCTCTGTGGTCC  450

seq1  TCCCTAACCCAGTCTAGGCACAAGGAAACCACCAGGCAAGTCCAAGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAACCCAGTCTAGGCACAAGGAAACCACCAGGCAAGTCCAAGATAC  500

seq1  ATCTGTGACTCTCGGTCCTAATTGTCAACTTGTCTGGGTTGGAAACCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGACTCTCGGTCCTAATTGTCAACTTGTCTGGGTTGGAAACCAAT  550

seq1  GAAAAGAGTCCCCTTGTGAGGGATTGTCATGGTTAGATTATCTCAAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTCCCCTTGTGAGGGATTGTCATGGTTAGATTATCTCAAGTGG  600

seq1  GAAGACCCATTCTCGGTGTAGATGGCAGCCCAAACAGTAAGAAATGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCATTCTCGGTGTAGATGGCAGCCCAAACAGTAAGAAATGTAGC  650

seq1  CAGGAACCGACTAATGTCATTAGTCCTAGCCCTTGGGAGATAGATGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCGACTAATGTCATTAGTCCTAGCCCTTGGGAGATAGATGCAGA  700

seq1  TTGTTCTCTTGAGTCCAAGGACAGCCTGATCTACATACTGAGTTCCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTTGAGTCCAAGGACAGCCTGATCTACATACTGAGTTCCAGGA  750

seq1  CAGCCAGGGATTCATTGTGAGAGCCTGTCTCAAAACAAGCTAACACCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGATTCATTGTGAGAGCCTGTCTCAAAACAAGCTAACACCAGA  800

seq1  GATGGAGGACAGAGGCTTTGCTTTCACCTGCTAGCTCTCACTATT  845
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGGACAGAGGCTTTGCTTTCACCTGCTAGCTCTCACTATT  845

seq1: chr19_45390846_45391207
seq2: B6Ng01-020N22.g_73_434 (reverse)

seq1  AACCCTTTCCTCCCCAATATACTCAGGCACACCCACACATGCACATAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTCCTCCCCAATATACTCAGGCACACCCACACATGCACATAACA  50

seq1  TAAATAAATGTAAGTATACCTGAAATAGTGCAAAGGATGTATTGATACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATGTAAGTATACCTGAAATAGTGCAAAGGATGTATTGATACTA  100

seq1  TTTACTCGTATTTATCAGAAGCTGAATTTTATCCGGCTCTTTTATGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCGTATTTATCAGAAGCTGAATTTTATCCGGCTCTTTTATGATAG  150

seq1  AGTCACAGCCAAGGTCAACCCCACCTCTTTCTCCCAAGAAAAACTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGCCAAGGTCAACCCCACCTCTTTCTCCCAAGAAAAACTGAAAA  200

seq1  GCTTTCAGGAAGGAGAAAGCCCCAAGATGGCTGCTGAGGCATATTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGGAAGGAGAAAGCCCCAAGATGGCTGCTGAGGCATATTCCTGT  250

seq1  AATCCCAGCAATAGAGAGGCTCAAGCAGGGGAACCCTGCGTAGTTAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCAATAGAGAGGCTCAAGCAGGGGAACCCTGCGTAGTTAAAGC  300

seq1  CTGTCTAAATAGGCAAATAACCTTTCATCTTTCTGACCTTCATCGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAAATAGGCAAATAACCTTTCATCTTTCTGACCTTCATCGAACAG  350

seq1  CTTAGCATTAAT  362
      ||||||||||||
seq2  CTTAGCATTAAT  362