BAC Information

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BAC

Clone NameB6Ng01-021M20
Chromosome19 (Build37)
Map Location 3,272,090 - 3,447,728
singlet/doubletdoublet
Overlap geneIghmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218
Downstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M20.bB6Ng01-021M20.g
ACCDH854207DH854208
length1,100816
definitionDH854207|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M20, 5' end.DH854208|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,272,090 - 3,273,194)(3,446,914 - 3,447,728)
sequence
gaattcagggtcatcttctgatacaaacaagttcaaggcagcctgaagcc
acatgacacccactctcagaaagtgtcaaaaaactgggggttggagagat
ggctcgcagtactgctcttgcagaggacctgagttcaattcccagcaccc
acgaaagtggctcacaaccatccataagtccagctccaggggatctgata
tgtttgaccgccacaggcacctgcactcatgtgcatatatatttaaatta
aaataaatccttaaataaacttaagaagcaaaaaacaaacaaatctcaaa
acaaatgagaccacttcatcatgatggtgaactgtgtacttaatcaagga
gacagaacctaacctaacactcacagagatgcaaagtaagagctcagtaa
gaacagttgctcataagcataaggaccagagttcaactctccagtgccca
tgtaaaaagcagggaggggctgcacaggggcctctaaccaagcactgtca
ggggcagaggcgggagtactcctggggtttgctggacaccaccccagctc
caggttcagtggaaaccttgtcttaaaggcatcaatgcaaaaagcaatag
agcaggactcctgatgtcttcctctggtcacacacacacacacaccacaa
aacaagaggggacacccagagtagccctgtgtctgtgaaagacattgatt
ttgtagttagaagactccctacaaagtgaatcccgggaagagcagcagcc
gctgcagactccaggccaaggctgcgctggcaggagggccactctcacct
gtgttggtggctagaaccacatctgccgcagtgaggctctgaactatggc
tgcttctttccctctcctttcagttccttccttagcagcttaaatttcac
ttcgataattacctttctctctcttatctgcgtctttttgtcttgcccta
gaagaaattctattattactcacagagtctgtacttcttttcagcacact
gcttctcagacagtcagcgatgcagctcagccaatcctgagaccatgcta
actgcgaatcattgcgaagtacgccacagcttgcttaaagcttcccaccc

gaattcaattcctaccacccagtcaggaagctcattatacctagtgctca
agcttcaggggactcagcgccctcttctggcctcctcagatacctgcatg
cactgggacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacgtctgttacctggatgccctcaggaagccatcatcag
cgccctcttctggcctcctcagatacctgcatgcactgggacactcacac
acacacacacctgtctgttacctggatgccctcaggaagccatcagttcc
agaaacttccaaaccatgatccacaatcttcctgaagacccatcaaagag
gatgaaaatgtgaactgaagttttcagggagaacaaaaggccactcctct
gcttaaggtgccacagagctcatcaactgctcatgacgtctgtgactgga
gctggagagattgcgtgagggttaagggcacttgttgctcctgcagttga
cctgatttatgttcccagcacccagctgggtggttcacagttgctgccta
acaccagcagaacaccagagttctgctaccctctatagtccatgcttatg
gtgcacactccaatgggcaggcatgcacagagacacagaaaatagaagtc
aaatcaacactaagaagcagaagaaaataccctctgtactttctgtccct
ttagtggtccagattgaaccagggaggacatttgtatggcaggaaaccac
ctgctcaagttgggaagcatttcatggaatcttcagtcttttggtggtgg
tgatggtggtggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_3272090_3273194
seq2: B6Ng01-021M20.b_48_1147

seq1  GAATTCAGGGTCATCTTCTGATACAAACAAGTTCAAGGCAGCCTGAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTCATCTTCTGATACAAACAAGTTCAAGGCAGCCTGAAGCC  50

seq1  ACATGACACCCACTCTCAGAAAGTGTCAAAAAACTGGGGGTTGGAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACACCCACTCTCAGAAAGTGTCAAAAAACTGGGGGTTGGAGAGAT  100

seq1  GGCTCGCAGTACTGCTCTTGCAGAGGACCTGAGTTCAATTCCCAGCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCAGTACTGCTCTTGCAGAGGACCTGAGTTCAATTCCCAGCACCC  150

seq1  ACGAAAGTGGCTCACAACCATCCATAAGTCCAGCTCCAGGGGATCTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGTGGCTCACAACCATCCATAAGTCCAGCTCCAGGGGATCTGATA  200

seq1  TGTTTGACCGCCACAGGCACCTGCACTCATGTGCATATATATTTAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGACCGCCACAGGCACCTGCACTCATGTGCATATATATTTAAATTA  250

seq1  AAATAAATCCTTAAATAAACTTAAGAAGCAAAAAACAAACAAATCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCCTTAAATAAACTTAAGAAGCAAAAAACAAACAAATCTCAAA  300

seq1  ACAAATGAGACCACTTCATCATGATGGTGAACTGTGTACTTAATCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAGACCACTTCATCATGATGGTGAACTGTGTACTTAATCAAGGA  350

seq1  GACAGAACCTAACCTAACACTCACAGAGATGCAAAGTAAGAGCTCAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACCTAACCTAACACTCACAGAGATGCAAAGTAAGAGCTCAGTAA  400

seq1  GAACAGTTGCTCATAAGCATAAGGACCAGAGTTCAACTCTCCAGTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTGCTCATAAGCATAAGGACCAGAGTTCAACTCTCCAGTGCCCA  450

seq1  TGTAAAAAGCAGGGAGGGGCTGCACAGGGGCCTCTAACCAAGCACTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGCAGGGAGGGGCTGCACAGGGGCCTCTAACCAAGCACTGTCA  500

seq1  GGGGCAGAGGCGGGAGTACTCCTGGGGTTTGCTGGACACCACCCCAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGGCGGGAGTACTCCTGGGGTTTGCTGGACACCACCCCAGCTC  550

seq1  CAGGTTCAGTGGAAACCTTGTCTTAAAGGCATCAATGCAAAAAGCAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGTGGAAACCTTGTCTTAAAGGCATCAATGCAAAAAGCAATAG  600

seq1  AGCAGGACTCCTGATGTCTTCCTCTGGTCACACACACACACACACCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGACTCCTGATGTCTTCCTCTGGTCACACACACACACACACCACAA  650

seq1  AACAAGAGGGGACACCCAGAGTAGCCCTGTGTCTGTGAAAGACATTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGGGGACACCCAGAGTAGCCCTGTGTCTGTGAAAGACATTGATT  700

seq1  TTGTAGTTAGAAGACTCCCTACAAAGTGAATCCCGGGAAGAGCAGCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTAGAAGACTCCCTACAAAGTGAATCCCGGGAAGAGCAGCAGCC  750

seq1  GCTGCAGACTCCAGGCCAAGGCTGCGCTGGCAGGAGGGCCACTCTCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGACTCCAGGCCAAGGCTGCGCTGGCAGGAGGGCCACTCTCACCT  800

seq1  GTGTTGGTGGCTAGAACCACATCTGCCGCAGTGAGGCTCTGAACTATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGTGGCTAGAACCACATCTGCCGCAGTGAGGCTCTGAACTATGGC  850

seq1  TGCTTC-TTCCCTCTCC-TTCAGTTCCTTCCTTAGCAGCTT-AATTTCAC  897
      |||||| |||||||||| ||||||||||||||||||||||| ||||||||
seq2  TGCTTCTTTCCCTCTCCTTTCAGTTCCTTCCTTAGCAGCTTAAATTTCAC  900

seq1  TTCGAAAATTACCTTTCTCTCTCTTATCCTGCGTCTTTTTGTTCTTGCCC  947
      ||||| ||||||||||||||||||||| ||||||||||||| ||||||||
seq2  TTCGATAATTACCTTTCTCTCTCTTAT-CTGCGTCTTTTTG-TCTTGCCC  948

seq1  TAGAAGAAAATCTATAATTACTCCAACAAGAGTCTGTACTTCTTTTCCAG  997
      ||||||||| ||||| |||||||  || |||||||||||||||||| |||
seq2  TAGAAGAAATTCTATTATTACTC--AC-AGAGTCTGTACTTCTTTT-CAG  994

seq1  CACACTGC-TCTCAGACAGTCAGCGATGCAGCTCAGCCAATCCTGAGACC  1046
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCTTCTCAGACAGTCAGCGATGCAGCTCAGCCAATCCTGAGACC  1044

seq1  ATGCTAAACTGCAGAATCATTGCGAAGGACGCACACAGCTGCCTAAGAGC  1096
      ||||| |||||| |||||||||||||| |||| |||||||  || | |||
seq2  ATGCT-AACTGC-GAATCATTGCGAAGTACGC-CACAGCTTGCTTAAAGC  1091

seq1  TTCCCACCC  1105
      |||||||||
seq2  TTCCCACCC  1100

seq1: chr19_3446914_3447728
seq2: B6Ng01-021M20.g_71_886 (reverse)

seq1  CAAACCACCACCATCACCACCACCAAAAGACTGAAGATTCCATGAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACCACCATCACCACCACCAAAAGACTGAAGATTCCATGAAATGC  50

seq1  TTCCCAACTTGAGCAGGTGGTTTCCTGCCATACAAATGTCCTCCCTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACTTGAGCAGGTGGTTTCCTGCCATACAAATGTCCTCCCTGGTT  100

seq1  CAATCTGGACCACTAAAGGGACAGAAAGTACAGAGGGTATTTTCTTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGGACCACTAAAGGGACAGAAAGTACAGAGGGTATTTTCTTCTGC  150

seq1  TTCTTAGTGTTGATTTGACTTCTA-TTTCTGTGTCTCTGTGCATGCCTGC  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCTTAGTGTTGATTTGACTTCTATTTTCTGTGTCTCTGTGCATGCCTGC  200

seq1  CCATTGGAGTGTGCACCATAAGCATGGACTATAGAGGGTAGCAGAACTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAGTGTGCACCATAAGCATGGACTATAGAGGGTAGCAGAACTCT  250

seq1  GGTGTTCTGCTGGTGTTAGGCAGCAACTGTGAACCACCCAGCTGGGTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTGCTGGTGTTAGGCAGCAACTGTGAACCACCCAGCTGGGTGCT  300

seq1  GGGAACATAAATCAGGTCAACTGCAGGAGCAACAAGTGCCCTTAACCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATAAATCAGGTCAACTGCAGGAGCAACAAGTGCCCTTAACCCTC  350

seq1  ACGCAATCTCTCCAGCTCCAGTCACAGACGTCATGAGCAGTTGATGAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAATCTCTCCAGCTCCAGTCACAGACGTCATGAGCAGTTGATGAGCT  400

seq1  CTGTGGCACCTTAAGCAGAGGAGTGGCCTTTTGTTCTCCCTGAAAACTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCACCTTAAGCAGAGGAGTGGCCTTTTGTTCTCCCTGAAAACTTC  450

seq1  AGTTCACATTTTCATCCTCTTTGATGGGTCTTCAGGAAGATTGTGGATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACATTTTCATCCTCTTTGATGGGTCTTCAGGAAGATTGTGGATCA  500

seq1  TGGTTTGGAAGTTTCTGGAACTGATGGCTTCCTGAGGGCATCCAGGTAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGAAGTTTCTGGAACTGATGGCTTCCTGAGGGCATCCAGGTAAC  550

seq1  AGACAGGTGTGTGTGTGTGTGAGTGTCCCAGTGCATGCAGGTATCTGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGTGTGTGTGTGTGAGTGTCCCAGTGCATGCAGGTATCTGAGG  600

seq1  AGGCCAGAAGAGGGCGCTGATGATGGCTTCCTGAGGGCATCCAGGTAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAGAGGGCGCTGATGATGGCTTCCTGAGGGCATCCAGGTAACA  650

seq1  GACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  700

seq1  TGTGTGTGTCCCAGTGCATGCAGGTATCTGAGGAGGCCAGAAGAGGGCGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCCCAGTGCATGCAGGTATCTGAGGAGGCCAGAAGAGGGCGC  750

seq1  TGAGTCCCCTGAAGCTTGAGCACTAGGTATAATGAGCTTCCTGACTGGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCCTGAAGCTTGAGCACTAGGTATAATGAGCTTCCTGACTGGGT  800

seq1  GGTAGGAATTGAATTC  815
      ||||||||||||||||
seq2  GGTAGGAATTGAATTC  816