BAC Information

Click to search

BAC

Clone NameB6Ng01-022A19
Chromosome19 (Build37)
Map Location 37,137,938 - 37,225,786
singlet/doubletdoublet
Overlap geneCpeb3
Upstream geneRpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
Downstream geneMarch5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A19.bB6Ng01-022A19.g
ACCDH854385DH854386
length987927
definitionDH854385|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A19, 5' end.DH854386|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,224,796 - 37,225,786)(37,137,938 - 37,138,873)
sequence
gaattcccagaacaactttggagctggtcctctccatcctcagaacacct
tattgcctgaaccgtggcatgcaagtgcttctggtttagtaataagagaa
aggttctggggtactcttaacaagtgagataaataatgtccaaggcattt
aaaaatacatcacaaatacctctataaacaagaggtaataggaggaaatt
tatcttttttgtagcctggtgtgcatataactgtatggatatatattcct
ttcgaattcctagctgagtgctgggtaaaaaatttaaggctgccgggcgt
ggtggcgcacgcctttaatcccagcactcgggaggtagaggcaggcggat
ttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcca
gggctatacagagaaaccctgtctcgaaaaacaaaaaacaaaaacaaaca
aaaatttaaggctgcactaaaattaaactctcttttggcgtgaatgtgcg
caattccagaattattctactaaagagagttattctggaaagagtaattc
tggaattgctcgtattcacgccaaaagttaccctttactaccctggagga
ctcaccaaagtacatccttaatggttttcgaggatttggcaagtatatat
tacataaaatcaagtgttgttttataaacaaccctttacccattttcacc
ctttcagactacacgtccttttaactagtccctgcccttctcttaccttg
aggaagctgagcagtctccttgcctctggcctctcctgcggttgctccca
taattcccaagcacacagctgtcactgcatttatctcattatgtaattgt
tatctggtaactatggctggccagggcttctcatattagagactgtgcct
cattagttcatcgttcatccttggctcattaagacttccacaaactcatg
gaagcaaggcggtgtgaataagtgttcagaaccttgg
gaattcaaagaacaattaaggaaattaaggtaaaaattgttaatgacttc
ctaggtggcacatgacaatatgacttagccaagggttctaagatggattt
acaaacccagatttaactgagccaaaccaaaactaaagctctggctcgga
ggcagtcatggggggtgacgtggtcttaggagataagcagtgagcaaagc
ttttacttatttttcccaggttcattttctggaaagattttgcttgttcg
tatgttcgttttgataactgctatagtaggtataatttttatagacagta
aaataatcagtggaaagttcatagcatttgagaaaggttttgaagtaagg
gtaggaatttgaccttgagacagaaacaaaaatattcagtttgattaaaa
tatgagggcacaggagagggagatggctcagtcattaaagggcttgctgt
acagacaagaggagtggcgttcaggtcgctagaatccaggtgggcatgcc
agtttgcctataatgccagtctcaggaagtggaacagaggagccctgagt
aagctggctagcaagattagccttgttgttgagcaccggatctgactgag
acactgcttcaacgattaagttggagagtgatgaagaaagatgttcacta
tttatctttatgcctccttattgtacatatttgcaaacacacacatatca
aaacattctacacacatgcatgcactccacacatacacatgaaagaaaag
ggaaggtaataaatatgaaggtcagaataaaaaaagcaaaaaacggttgg
gagggaaactgaagctaactggaaagctctcattgcctaggcaaaaaaaa
cttgactgtttctttactaagaagacaactaacagtgatagaattcctgg
cctgcacatagttgtcaagagagacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37224796_37225786
seq2: B6Ng01-022A19.b_38_1024 (reverse)

seq1  CCAAGGGTTCTGAACACTTTGTCCGAGCCGCCTTTGCTTCCCATGTGTTT  50
      |||| ||||||||||||||  ||  | ||||| |||||| ||||| ||||
seq2  CCAA-GGTTCTGAACACTTATTCACA-CCGCC-TTGCTT-CCATGAGTTT  46

seq1  GTTGGAAGTCTTAATGAGCCAAGGATGAACGATGAAAACAAATGAGGCAC  100
      | ||||||||||||||||||||||||||||||||  ||| ||||||||||
seq2  G-TGGAAGTCTTAATGAGCCAAGGATGAACGATG--AACTAATGAGGCAC  93

seq1  AGTCTCTAACTATGAGAAGCCCTGGCCAGCCATAGTTAACAGATAACAAT  150
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  AGTCTCTAA-TATGAGAAGCCCTGGCCAGCCATAGTTACCAGATAACAAT  142

seq1  TACATAATGAGATAAATGCAGTGACAGCTGTGTGCTTGGGAATTATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGAGATAAATGCAGTGACAGCTGTGTGCTTGGGAATTATGGGA  192

seq1  GCAACCGCAGGAGAGGCCAGAGGCAAGGAGACTGCTCAGCTTCCTCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGCAGGAGAGGCCAGAGGCAAGGAGACTGCTCAGCTTCCTCAAGG  242

seq1  TAAGAGAAGGGCAGGGACTAGTT-AAAGGACGTGTAGTCTG-AAGGGTGA  298
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TAAGAGAAGGGCAGGGACTAGTTAAAAGGACGTGTAGTCTGAAAGGGTGA  292

seq1  AAATGGGT-AAGGGTTGTTTAT-AAACAACACTTGATTTTATGTAATATA  346
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  AAATGGGTAAAGGGTTGTTTATAAAACAACACTTGATTTTATGTAATATA  342

seq1  TACTTGCCAAATCCTCGAAAACCATTAAGGATGTACTTTGGTGAGTCCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCAAATCCTCGAAAACCATTAAGGATGTACTTTGGTGAGTCCTC  392

seq1  CAGGGTAGTAAAGGGTAACTTTTGGCGTGAATACGAGCAATTCCAGAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGTAAAGGGTAACTTTTGGCGTGAATACGAGCAATTCCAGAATT  442

seq1  ACTCTTTCCAGAATAACTCTCTTTAGTAGAATAATTCTGGAATTGCGCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCCAGAATAACTCTCTTTAGTAGAATAATTCTGGAATTGCGCAC  492

seq1  ATTCACGCCAAAAGAGAGTTTAATTTTAGTGCAGCCTTAAATTTTTGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGCCAAAAGAGAGTTTAATTTTAGTGCAGCCTTAAATTTTTGTTT  542

seq1  GTTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  592

seq1  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCG  642

seq1  CCTGCCTCTACCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTACCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCC  692

seq1  CGGCAGCCTTAAATTTTTTACCCAGCACTCAGCTAGGAATTCGAAAGGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCCTTAAATTTTTTACCCAGCACTCAGCTAGGAATTCGAAAGGAA  742

seq1  TATATATCCATACAGTTATATGCACACCAGGCTACAAAAAAGATAAATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCCATACAGTTATATGCACACCAGGCTACAAAAAAGATAAATTT  792

seq1  CCTCCTATTACCTCTTGTTTATAGAGGTATTTGTGATGTATTTTTAAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTATTACCTCTTGTTTATAGAGGTATTTGTGATGTATTTTTAAATG  842

seq1  CCTTGGACATTATTTATCTCACTTGTTAAGAGTACCCCAGAACCTTTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGACATTATTTATCTCACTTGTTAAGAGTACCCCAGAACCTTTCTC  892

seq1  TTATTACTAAACCAGAAGCACTTGCATGCCACGGTTCAGGCAATAAGGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTAAACCAGAAGCACTTGCATGCCACGGTTCAGGCAATAAGGTG  942

seq1  TTCTGAGGATGGAGAGGACCAGCTCCAAAGTTGTTCTGGGAATTC  991
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGATGGAGAGGACCAGCTCCAAAGTTGTTCTGGGAATTC  987

seq1: chr19_37137938_37138873
seq2: B6Ng01-022A19.g_66_992

seq1  GAATTCAAAGAACAATTAAGGAAATTAAGGTAAAAATTGTTAATGACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACAATTAAGGAAATTAAGGTAAAAATTGTTAATGACTTC  50

seq1  CTAGGTGGCACATGACAATATGACTTAGCCAAGGGTTCTAAGATGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGGCACATGACAATATGACTTAGCCAAGGGTTCTAAGATGGATTT  100

seq1  ACAAACCCAGATTTAACTGAGCCAAACCAAAACTAAAGCTCTGGCTCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCAGATTTAACTGAGCCAAACCAAAACTAAAGCTCTGGCTCGGA  150

seq1  GGCAGTCATGGGGGGTGACGTGGTCTTAGGAGATAAGCAGTGAGCAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCATGGGGGGTGACGTGGTCTTAGGAGATAAGCAGTGAGCAAAGC  200

seq1  TTTTACTTATTTTTCCCAGGTTCATTTTCTGGAAAGATTTTGCTTGTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTATTTTTCCCAGGTTCATTTTCTGGAAAGATTTTGCTTGTTCG  250

seq1  TATGTTCGTTTTGATAACTGCTATAGTAGGTATAATTTTTATAGACAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCGTTTTGATAACTGCTATAGTAGGTATAATTTTTATAGACAGTA  300

seq1  AAATAATCAGTGGAAAGTTCATAGCATTTGAGAAAGGTTTTGAAGTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCAGTGGAAAGTTCATAGCATTTGAGAAAGGTTTTGAAGTAAGG  350

seq1  GTAGGAATTTGACCTTGAGACAGAAACAAAAATATTCAGTTTGATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATTTGACCTTGAGACAGAAACAAAAATATTCAGTTTGATTAAAA  400

seq1  TATGAGGGCACAGGAGAGGGAGATGGCTCAGTCATTAAAGGGCTTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGCACAGGAGAGGGAGATGGCTCAGTCATTAAAGGGCTTGCTGT  450

seq1  ACAGACAAGAGGAGTGGCGTTCAGGTCGCTAGAATCCAGGTGGGCATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAGAGGAGTGGCGTTCAGGTCGCTAGAATCCAGGTGGGCATGCC  500

seq1  AGTTTGCCTATAATGCCAGTCTCAGGAAGTGGAACAGAGGAGCCCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCTATAATGCCAGTCTCAGGAAGTGGAACAGAGGAGCCCTGAGT  550

seq1  AAGCTGGCTAGCAAGATTAGCCTTGTTGTTGAGCACCGGATCTGACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCTAGCAAGATTAGCCTTGTTGTTGAGCACCGGATCTGACTGAG  600

seq1  ACACTGCTTCAACGATTAAGTTGGAGAGTGATGAAGAAAGATGTTCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTCAACGATTAAGTTGGAGAGTGATGAAGAAAGATGTTCACTA  650

seq1  TTTATC-TTATGCCTCCTTA-TGTACATATTTGCAAACACACACATATCA  698
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTATCTTTATGCCTCCTTATTGTACATATTTGCAAACACACACATATCA  700

seq1  AAACATTCTACACACATGCATGCACTCCACACATACACATGAAAGAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTACACACATGCATGCACTCCACACATACACATGAAAGAAAAG  750

seq1  GGAAGGTAAATAAATATGAAGGTCAGAA-AAAAAAAGCAAAAAACGGTTG  797
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAGGT-AATAAATATGAAGGTCAGAATAAAAAAAGCAAAAAACGGTTG  799

seq1  GGAGGGAAACTGAAGCTAGACTGGAAAGCTCTCAATGCCTAGGCAAAAAA  847
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  GGAGGGAAACTGAAGCTA-ACTGGAAAGCTCTCATTGCCTAGGCAAAAAA  848

seq1  AAACCTGGACTGTTTCTATAACTAAGGAAGAACAACTAACAGTGATAGAA  897
      ||  || |||||||||| | ||||| |||| ||||||||||||||||| |
seq2  AA--CTTGACTGTTTCT-TTACTAA-GAAG-ACAACTAACAGTGATAG-A  892

seq1  ATTCCATGGACATGCACATAAGTAGGTCAAGAGAGACCA  936
      ||||| ||| | ||||||||  |  ||||||||||||||
seq2  ATTCC-TGG-CCTGCACATAGTT--GTCAAGAGAGACCA  927