BAC Information

Click to search

BAC

Clone NameB6Ng01-022C11
Chromosome19 (Build37)
Map Location 45,595,232 - 45,702,250
singlet/doubletdoublet
Overlap geneBtrc, Poll, 5330431N19Rik, Fbxw4
Upstream geneSec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, EG627889
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022C11.bB6Ng01-022C11.g
ACCDH854449DH854450
length9061,049
definitionDH854449|Mus musculus domesticus DNA, BAC clone: B6Ng01-022C11, 5' end.DH854450|Mus musculus domesticus DNA, BAC clone: B6Ng01-022C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,595,232 - 45,596,131)(45,701,183 - 45,702,250)
sequence
gaattcacttgctgctcttccaaaggccctgcattcagtttttcagtgtc
taacatcacatgcagtacctcacaacttcctgtcactcctcttccagggc
atttaatggtacttctggcctccacaggcacctgcacacataagccatac
acacagaaataaacggatgaacaaatctattgtagatgtaaagacattta
taaataagaagttaaagttgataaggtgctgtatgcctataatcctagca
gttaggagtctaagacaggaggacatgggtttagaggccagcctgtgctg
cacagcaggatcccacctcagaaatccaagggttgggattggaagagtgg
tctaacatacacttgaccctaggctgcttcaccaccaccacccaggaaaa
aggctgaaatctgtcttcctgaaattcctgtgttgaacttgacgtctcta
atattttagaatctgattgtatttgaaggctgagctttttaaaagggtga
ttaggatcagttgaattcattgagaattggcattgatcccatgtgactgc
ttttcctcaaagacaacaagatcaggcgcacgcagatgcagtgcttgtaa
aggtggaggagacgtccgtctatgacggaagctggggaagaggcctgaga
atcagaacaattgtgcccacacttcggtcttgttcttttagcctccagac
agtgggaaatacagcgccatgtgtgcttcccagtgtatggaacttcattt
atgaaactcttacagattatatcccatgccagtaccagttttagagaaac
agcattcatttcataagagcaaactaccaacaagaaatcttatcggataa
aaggtgcggtacattttgctcaacccaagtaggtcagtgcctgatgatag
catcag
gaattctcttctaaaaaagcttgtgctggacattctgacttcacactagc
catctagggcatgtgctagggttttattgtccccccctttttgtatttag
aaatatatgggctaggatctctatactgtattattaggtccatgtctctc
cactttgtccatgactttgagtctttaaataagtaaataaataaataaaa
acacaccaaaaaaaatttctctaagcctggtagtggcagcacacaccttt
aatccctgcattgggaggcagaggcaggcagatatctgtgagttcgaggc
cagcctggtgtacagagcgagttccaggactgccaaggctacacagagaa
accctgtctcaaaaaaaaaaaaaagcaagctctccaggtgggcatggtag
agcctgccttttcctagtactctggaggaagaggcaggtggatttctgtg
agtgccaggtcagccagtgctgcagagcaacgcctgtcttttctttgaag
ctccagctctcagcttcgaggcactccctcagcgtcttatctagtgcagc
atgtgcttagtgcttccaagcttgggcttccctggtccttctgcctccca
ggaggtgcatggttcttttgtagtttgcttgaggtggcatctccatggga
atctctcttccctgtcctcttcctttgaagtgatcctcactggctgcctt
ctgtcacctccctgccactgttcctgctgaatgtgtttgtcggtcactga
gttggcaacgtgaggggttgtgagcagccactgttctctgaggacaggcg
tttcgcttccctcgatgctcgcttccttctcagtgagcgtctttctcctg
ttaaacaggcggtcctgtgcactttgttgatgatgtctttgttctaagtt
tccctctttcatgtgtttgtaccaagaactttacataaaatatgggccca
aactccagctatattgagtgctcctgaacatagaagcgagaatcctgacc
tggctctaagacaccttttgttttggtgactatgaattttaatttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45595232_45596131
seq2: B6Ng01-022C11.b_46_945

seq1  GAATTCACTTGCTGCTCTTCCAAAGGCCCTGCATTCAGTTTTTCAGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCTGCTCTTCCAAAGGCCCTGCATTCAGTTTTTCAGTGTC  50

seq1  TAACATCACATGCAGTACCTCACAACTTCCTGTCACTCCTCTTCCAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCACATGCAGTACCTCACAACTTCCTGTCACTCCTCTTCCAGGGC  100

seq1  ATTTAATGGTACTTCTGGCCTCCACAGGCACCTGCACACATAAGCCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGGTACTTCTGGCCTCCACAGGCACCTGCACACATAAGCCATAC  150

seq1  ACACAGAAATAAACGGATGAACAAATCTATTGTAGATGTAAAGACATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAATAAACGGATGAACAAATCTATTGTAGATGTAAAGACATTTA  200

seq1  TAAATAAGAAGTTAAAGTTGATAAGGTGCTGTATGCCTATAATCCTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGAAGTTAAAGTTGATAAGGTGCTGTATGCCTATAATCCTAGCA  250

seq1  GTTAGGAGTCTAAGACAGGAGGACATGGGTTTAGAGGCCAGCCTGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGTCTAAGACAGGAGGACATGGGTTTAGAGGCCAGCCTGTGCTG  300

seq1  CACAGCAGGATCCCACCTCAGAAATCCAAGGGTTGGGATTGGAAGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGGATCCCACCTCAGAAATCCAAGGGTTGGGATTGGAAGAGTGG  350

seq1  TCTAACATACACTTGACCCTAGGCTGCTTCACCACCACCACCCAGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATACACTTGACCCTAGGCTGCTTCACCACCACCACCCAGGAAAA  400

seq1  AGGCTGAAATCTGTCTTCCTGAAATTCCTGTGTTGAACTTGACGTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAATCTGTCTTCCTGAAATTCCTGTGTTGAACTTGACGTCTCTA  450

seq1  ATATTTTAGAATCTGATTGTATTTGAAGGCTGAGCTTTTTAAAAGGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGAATCTGATTGTATTTGAAGGCTGAGCTTTTTAAAAGGGTGA  500

seq1  TTAGGATCAGTTGAATTCATTGAGAATTGGCATTGATCCCATGTGACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATCAGTTGAATTCATTGAGAATTGGCATTGATCCCATGTGACTGC  550

seq1  TTTTCCTCAAAGACAACAAGATCAGGCGCACGCAGATGCAGTGCTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCAAAGACAACAAGATCAGGCGCACGCAGATGCAGTGCTTGTAA  600

seq1  AGGTGGAGGAGACGTCCGTCTATGACGGAAGCTGGGGAAGAGGCCTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGAGACGTCCGTCTATGACGGAAGCTGGGGAAGAGGCCTGAGA  650

seq1  ATCAGAACAATTGTGCCCACACTTCGGTCTTGTTC-TTTAGCCTCCAGAC  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCAGAACAATTGTGCCCACACTTCGGTCTTGTTCTTTTAGCCTCCAGAC  700

seq1  AGTGGGAAATACAGCGCCATGTGTGCTTCCCAGTGTATGGAACTTCA-TT  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTGGGAAATACAGCGCCATGTGTGCTTCCCAGTGTATGGAACTTCATTT  750

seq1  ATGAAACTCTTACAGATTATATCCCATGCCAGTACCAG-TTTAGAGAAAC  797
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGAAACTCTTACAGATTATATCCCATGCCAGTACCAGTTTTAGAGAAAC  800

seq1  AGCATTCATTTCATAAGAGCAAACTACCAACAAGAAATCTTATCAGGATA  847
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  AGCATTCATTTCATAAGAGCAAACTACCAACAAGAAATCTTATC-GGAT-  848

seq1  AAAAGGTGCGGTACATTATGCTCAACCCAAGGTAGGTCAGTGCCTGATGA  897
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  AAAAGGTGCGGTACATTTTGCTCAACCCAA-GTAGGTCAGTGCCTGATGA  897

seq1  TAG  900
      |||
seq2  TAG  900

seq1: chr19_45701183_45702250
seq2: B6Ng01-022C11.g_68_1116 (reverse)

seq1  TTGCAAATTAAAAATTCAAAGTCACAGAAACAAAAGGTGATACTTAGAGC  50
      ||||||||| |||||||| ||||||  ||||||||||||   ||||||||
seq2  TTGCAAATT-AAAATTCATAGTCACCAAAACAAAAGGTG--TCTTAGAGC  47

seq1  CAGGTCAGAATCTCTGCTTTCTATTGGTCAGAAGCACCTCATATTAAGCC  100
      |||||||| || |||   ||||| || |||| |||||   ||||  || |
seq2  CAGGTCAGGAT-TCTCGCTTCTA-TGTTCAGGAGCACTCAATAT--AG-C  92

seq1  TGGAGTTTTGGGGCCCATATTTTATGCTAAAAGTTCCTGGGTACAAACAC  150
      ||||||||  ||||||||||||||||   |||||| || |||||||||||
seq2  TGGAGTTT--GGGCCCATATTTTATG--TAAAGTT-CTTGGTACAAACAC  137

seq1  ATGAAAAGAAGGGGAAACTTAGAAACAAAGAACATCATCAACAAAGTGCA  200
      ||| |||||  ||||||||||| ||||||| |||||||||||||||||||
seq2  ATG-AAAGA--GGGAAACTTAG-AACAAAG-ACATCATCAACAAAGTGCA  182

seq1  CAGGACCGACTGTTTAACAGGAGAAAGACGCTCACTGAGAAGGAAGCGAA  250
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  CAGGACCGCCTGTTTAACAGGAGAAAGACGCTCACTGAGAAGGAAGCG-A  231

seq1  GCATCGAGGGAAGCGAAGCGCCTGTCCTCAGAGGACAGTGGCTGCTCACA  300
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  GCATCGAGGGAAGCGAAACGCCTGTCCTCAGAGAACAGTGGCTGCTCACA  281

seq1  ACCCCTCACGTTGCCAACTCAGTGACCGACAAACACATTCAGCAGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCACGTTGCCAACTCAGTGACCGACAAACACATTCAGCAGGAACA  331

seq1  GTGGCAGGGAGGTGACAGAAGGCAGCCAGTGAGGATCACTTCAAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGAGGTGACAGAAGGCAGCCAGTGAGGATCACTTCAAAGGAAG  381

seq1  AGGACAGGGAAGAGAGATTCCCATGGAGATGCCACCTCAAGCAAACTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGGAAGAGAGATTCCCATGGAGATGCCACCTCAAGCAAACTACA  431

seq1  AAAGAACCATGCACCTCCTGGGAGGCAGAAGGACCAGGGAAGCCCAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCATGCACCTCCTGGGAGGCAGAAGGACCAGGGAAGCCCAAGCT  481

seq1  TGGAAGCACTAAGCACATGCTGCACTAGATAAGACGCTGAGGGAGTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCACTAAGCACATGCTGCACTAGATAAGACGCTGAGGGAGTGCCT  531

seq1  CGAAGCTGAGAGCTGGAGCTTCAAAGAAAAGACAGGCGTTGCTCTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCTGAGAGCTGGAGCTTCAAAGAAAAGACAGGCGTTGCTCTGCAGC  581

seq1  ACTGGCTGACCTGGCACTCACAGAAATCCACCTGCCTCTTCCTCCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGACCTGGCACTCACAGAAATCCACCTGCCTCTTCCTCCAGAGT  631

seq1  ACTAGGAAAAGGCAGGCTCTACCATGCCCACCTGGAGAGCTTGCTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAAAGGCAGGCTCTACCATGCCCACCTGGAGAGCTTGCTTTTTT  681

seq1  TTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGCAGTCCTGGAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGCAGTCCTGGAACTC  731

seq1  GCTCTGTACACCAGGCTGGCCTCGAACTCACAGATATCTGCCTGCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTACACCAGGCTGGCCTCGAACTCACAGATATCTGCCTGCCTCTG  781

seq1  CCTCCCAATGCAGGGATTAAAGGTGTGTGCTGCCACTACCAGGCTTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAATGCAGGGATTAAAGGTGTGTGCTGCCACTACCAGGCTTAGAG  831

seq1  AAATTTTTTTTGGTGTGTTTTTATTTATTTATTTACTTATTTAAAGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTTGGTGTGTTTTTATTTATTTATTTACTTATTTAAAGACTC  881

seq1  AAAGTCATGGACAAAGTGGAGAGACATGGACCTAATAATACAGTATAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATGGACAAAGTGGAGAGACATGGACCTAATAATACAGTATAGAG  931

seq1  ATCCTAGCCCATATATTTCTAAATACAAAAAGGGGGGGACAATAAAACCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGCCCATATATTTCTAAATACAAAAAGGGGGGGACAATAAAACCC  981

seq1  TAGCACATGCCCTAGATGGCTAGTGTGAAGTCAGAATGTCCAGCACAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATGCCCTAGATGGCTAGTGTGAAGTCAGAATGTCCAGCACAAGC  1031

seq1  TTTTTTAGAAGAGAATTC  1068
      ||||||||||||||||||
seq2  TTTTTTAGAAGAGAATTC  1049