BAC Information

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BAC

Clone NameB6Ng01-023I12
Chromosome19 (Build37)
Map Location 25,603,953 - 25,743,256
singlet/doubletdoublet
Overlap geneDmrt1, Dmrt3
Upstream genePip5k1b, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474
Downstream geneDmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857, Smarca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023I12.bB6Ng01-023I12.g
ACCDH855426DH855427
length7441,131
definitionDH855426|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I12, 5' end.DH855427|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,603,953 - 25,604,695)(25,742,112 - 25,743,256)
sequence
gaattccatgctaaagtcacccctagattacttcagctgtaaactgtaat
gactctcccctggccatatttctcccaaggcctcctatctcagttacttg
taaggctgctcctcccctctcttgttgtctttgatcttttataattggct
taaaactctccatagttaatctgcagtggctttgtttctcctccctagtt
cttcttgctcagtccctgggaatttaataatctgtttcttattgttttct
catattctttttacggcgtcgtattttctgtggcaagggtaatcatcttt
tcttctgtctgcccagtcgctttagtttaactgtggatgcaggtgtgcac
agtgttggtaataagcaagcgaccctgggcccagtctgtggagttgctgg
acttggcagtcgcaggcttggccggagctgtgaacacctgctggatatgt
ggtggtgtgacttaggagagcttggcccgacacgtgagcgcaaactgtga
ctgctcacgtggaaggaagaacagttgtgttacttgctctgaggttgact
ttcctgtgactgccctgacatggctttcatagcgattttctcactaagcc
cagttcttcagcccagaggggcttacaggcatagcactgaagcctcttgc
cattttccctggtccaagagcatcccgaggccccaggaccctgaatttct
caaatatgttctctctctctctctctctctctctctctctctct
gaattccactagaatggcccctgaatcaccaagctgggtacttctgtctt
taacacctaaggcatgtctgagtccccagcctggtccttcagcctccact
tgctcaaggagccgtaaggcctctaaggtaaccaagcttgaagactcata
gaggggatctaggagacactaccaccagcagcaccagcaatagcttaaac
cacttagctaaccttaatcctgagtgccaggtggtgactgggcacctctg
ggcaccttggtataaggtctttgctgtggctaactgtggctctggtttct
ttagagatgacctcgaacccacatcctcttgtggaaagcaaaagtgtcat
acagtctgagaacttcaactggctatggacacacagcacagtgaaataaa
taatcccagatgggaccacagagatatgatttcccaatttactttgcgaa
attagatgcagccccccccttcacactcaatgggggtggaggtgagcaag
gaggactttaagagataggtgctctccaccaggatggttagcatgccccc
ttcccctgcttagacagcccaaaaagcaaaagacaagaggaatccgtgct
tcttctcttcctttctcgttccttccatgggaagcagggtaaaggagaca
ctgaacagctttgtccctgatcttacatttaaggggaattgaaactcaaa
ggagtgaatcaagagcttgctaggggtgtggggggacaggacacacagca
atgcagagacagtgaagaactaaagaggcctcacctatatttggtccatc
tctctgtcgtcctgtgttttgtgaaacatgctccttccaggcaagataca
gaatcccatgcacagtcaggcaatcttgcagagcgcactctgccttcttc
aatctcagggagctaagggccaataacaggaggaggggctggtcatctag
cagctagagaggagaaaaattgcgttatctttgaataccatctaaatgct
ctcagagagttagacccgtggcagttgccttgtataaagacatcagaatt
gtagtgtccaaggcctccttgaatactactccctggtaggggggctctca
gactgagtaaacacaaacctctccttgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25603953_25604695
seq2: B6Ng01-023I12.b_46_789

seq1  GAATTCCATGCTAAAGTCACCCCTAGATTACTTCAGCTGTAAACTGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTAAAGTCACCCCTAGATTACTTCAGCTGTAAACTGTAAT  50

seq1  GACTCTCCCCTGGCCATATTTCTCCCAAGGCCTCCTATCTCAGTTACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCCCTGGCCATATTTCTCCCAAGGCCTCCTATCTCAGTTACTTG  100

seq1  TAAGGCTGCTCCTCCCCTCTCTTGTTGTCTTTGATCTTTTATAATTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTGCTCCTCCCCTCTCTTGTTGTCTTTGATCTTTTATAATTGGCT  150

seq1  TAAAACTCTCCATAGTTAATCTGCAGTGGCTTTGTTTCTCCTCCCTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCTCCATAGTTAATCTGCAGTGGCTTTGTTTCTCCTCCCTAGTT  200

seq1  CTTCTTGCTCAGTCCCTGGGAATTTAATAATCTGTTTCTTATTGTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTCAGTCCCTGGGAATTTAATAATCTGTTTCTTATTGTTTTCT  250

seq1  CATATTCTTTTTACGGCGTCGTATTTTCTGTGGCAAGGGTAATCATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTTTTTACGGCGTCGTATTTTCTGTGGCAAGGGTAATCATCTTT  300

seq1  TCTTCTGTCTGCCCAGTCGCTTTAGTTTAACTGTGGATGCAGGTGTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTCTGCCCAGTCGCTTTAGTTTAACTGTGGATGCAGGTGTGCAC  350

seq1  AGTGTTGGTAATAAGCAAGCGACCCTGGGCCCAGTCTGTGGAGTTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGTAATAAGCAAGCGACCCTGGGCCCAGTCTGTGGAGTTGCTGG  400

seq1  ACTTGGCAGTCGCAGGCTTGGCCGGAGCTGTGAACACCTGCTGGATATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCAGTCGCAGGCTTGGCCGGAGCTGTGAACACCTGCTGGATATGT  450

seq1  GGTGGTGTGACTTAGGAGAGCTTGGCCCGACACGTGAGCGCAAACTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTGACTTAGGAGAGCTTGGCCCGACACGTGAGCGCAAACTGTGA  500

seq1  CTGCTCACGTGGAAGGAAGAACAGTTGTGTTACTTGCTCTGAGGTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACGTGGAAGGAAGAACAGTTGTGTTACTTGCTCTGAGGTTGACT  550

seq1  TTCCTGTGACTGCCCTGACATGGCTTTCATAGCGATTTTCTCACTAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGACTGCCCTGACATGGCTTTCATAGCGATTTTCTCACTAAGCC  600

seq1  CAGTTCTTCAGCCCAGAGGGGCTTACAGGCATAGCACTGAAGCCTCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTCAGCCCAGAGGGGCTTACAGGCATAGCACTGAAGCCTCTTGC  650

seq1  CA-TTTCCCTGGTCCAAGAGCATCCCGAGGCCCCAGGACCCTGAATTTCT  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCCTGGTCCAAGAGCATCCCGAGGCCCCAGGACCCTGAATTTCT  700

seq1  CAAATATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  744

seq1: chr19_25742112_25743256
seq2: B6Ng01-023I12.g_68_1198 (reverse)

seq1  ATCCCAAGGTGAGGGCTTTTGT-TTTACTCAGTCCTGAGCACCCCCTCAC  49
      ||||||||| ||||   ||||| |||||||||| |||||  |||||  ||
seq2  ATCCCAAGGAGAGG---TTTGTGTTTACTCAGT-CTGAGAGCCCCCCTAC  46

seq1  AGGGGTGT-GTGTACAAGGAGGCCCTTGGCACATACAATCTCCTGACTGT  98
        ||| || || | |||||||||| | | ||| |||||  | |||| |||
seq2  CAGGGAGTAGTATTCAAGGAGGCCTTGGACAC-TACAA--TTCTGA-TGT  92

seq1  CTTCTATAACAAGGCAACTGCCACTGGGGTCCTAATTCCTTCTGGTGAGC  148
      ||| ||| ||||||||||||||||  |||| |||| ||  ||| | ||||
seq2  CTT-TAT-ACAAGGCAACTGCCAC--GGGT-CTAACTC--TCT-GAGAGC  134

seq1  ATTTGGCATGGGTATTCAAAGATAACCGCAGTTTTCTCCTCTCTTAGCTG  198
      |||| | || ||||||||||||||||   | |||||||||||| ||||||
seq2  ATTTAG-AT-GGTATTCAAAGATAACGCAATTTTTCTCCTCTC-TAGCTG  181

seq1  CTAGATGACCAGCCCCTCCTCCTGTTATTGGCCCTTGGCTCCCTGGGGTT  248
      |||||||||||||||||||||||||||||||||||| |||||||| | ||
seq2  CTAGATGACCAGCCCCTCCTCCTGTTATTGGCCCTTAGCTCCCTGAGATT  231

seq1  GGAGAAGGCAGGGTGCGCTCTGCAAGATTGCCTGACTGTGCATGGGATTC  298
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGCAGAGTGCGCTCTGCAAGATTGCCTGACTGTGCATGGGATTC  281

seq1  TGTATCTTGCCTGGAAGG-GCATGTTTCACAAAACACAGGACGACACAGA  347
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TGTATCTTGCCTGGAAGGAGCATGTTTCACAAAACACAGGACGACAGAGA  331

seq1  GGTGGACCAAATATAGGTGAGGCCTCTTTAGTTCTTCACTGTCTCTGCAT  397
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACCAAATATAGGTGAGGCCTCTTTAGTTCTTCACTGTCTCTGCAT  381

seq1  TGCTGTGTGTCCTGT-CCCCCACA-CCCTAGCAAGCTCTTGATTCACTCC  445
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  TGCTGTGTGTCCTGTCCCCCCACACCCCTAGCAAGCTCTTGATTCACTCC  431

seq1  TTTGAGTTTCAATTCCCCTTAAATGTAAGATCAGGGACAAAGCTGTTCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTCAATTCCCCTTAAATGTAAGATCAGGGACAAAGCTGTTCAG  481

seq1  TGTCTCCTTTACCCTGCTTCCCATGGAAGGAACGAGAAAGGAAGAGAAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTTTACCCTGCTTCCCATGGAAGGAACGAGAAAGGAAGAGAAGA  531

seq1  AGCACGGATTCCTCTTGTCTTTTGCTTTTTGGGCTGTCTAAGCAGGGGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGATTCCTCTTGTCTTTTGCTTTTTGGGCTGTCTAAGCAGGGGAA  581

seq1  GGGGGCATGCTAACCATCCTGGTGGAGAGCACCTATCTCTTAAAGTCCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATGCTAACCATCCTGGTGGAGAGCACCTATCTCTTAAAGTCCTC  631

seq1  CTTGCTCACCTCCACCCCCATTGAGTGTGAAGGGGGGGGCTGCATCTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCACCTCCACCCCCATTGAGTGTGAAGGGGGGGGCTGCATCTAAT  681

seq1  TTCGCAAAGTAAATTGGGAAATCATATCTCTGTGGTCCCATCTGGGATTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAAAGTAAATTGGGAAATCATATCTCTGTGGTCCCATCTGGGATTA  731

seq1  TTTATTTCACTGTGCTGTGTGTCCATAGCCAGTTGAAGTTCTCAGACTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCACTGTGCTGTGTGTCCATAGCCAGTTGAAGTTCTCAGACTGT  781

seq1  ATGACACTTTTGCTTTCCACAAGAGGATGTGGGTTCGAGGTCATCTCTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTTTTGCTTTCCACAAGAGGATGTGGGTTCGAGGTCATCTCTAA  831

seq1  AGAAACCAGAGCCACAGTTAGCCACAGCAAAGACCTTATACCAAGGTGCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAGAGCCACAGTTAGCCACAGCAAAGACCTTATACCAAGGTGCC  881

seq1  CAGAGGTGCCCAGTCACCACCTGGCACTCAGGATTAAGGTTAGCTAAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGCCCAGTCACCACCTGGCACTCAGGATTAAGGTTAGCTAAGTG  931

seq1  GTTTAAGCTATTGCTGGTGCTGCTGGTGGTAGTGTCTCCTAGATCCCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGCTATTGCTGGTGCTGCTGGTGGTAGTGTCTCCTAGATCCCCTC  981

seq1  TATGAGTCTTCAAGCTTGGTTACCTTAGAGGCCTTACGGCTCCTTGAGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCTTCAAGCTTGGTTACCTTAGAGGCCTTACGGCTCCTTGAGCA  1031

seq1  AGTGGAGGCTGAAGGACCAGGCTGGGGACTCAGACATGCCTTAGGTGTTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGCTGAAGGACCAGGCTGGGGACTCAGACATGCCTTAGGTGTTA  1081

seq1  AAGACAGAAGTACCCAGCTTGGTGATTCAGGGGCCATTCTAGTGGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAGTACCCAGCTTGGTGATTCAGGGGCCATTCTAGTGGAATTC  1131