BAC Information

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BAC

Clone NameB6Ng01-026K02
Chromosome19 (Build37)
Map Location 58,921,693 - 59,075,395
singlet/doubletdoublet
Overlap geneHspa12a, 6430537H07Rik, 4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026K02.bB6Ng01-026K02.g
ACCDH857617DH857618
length1,141485
definitionDH857617|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K02, 5' end.DH857618|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,921,693 - 58,922,836)(59,074,905 - 59,075,395)
sequence
gaattcctggcaggctctgtgtctccctgcgtcagagctaatgaggagca
gaataggaagcacaaacgaagtctccacaatcccctagcagaaagagcct
gagagcctaggcagggaacttacctcctattcgatggatcactgaggctc
cctgcctgacaaggcatggcctagaccttgggattccctaccatctgagg
cggggtcttctacaaaccagagggatcctgtttgtaactcttccaatgat
gaaattctccgaggctggaactattctacccgttgatataatcgtggtta
cataactatattatctttgtcaaaatccacggaacagaatacctggaaag
cttccacctcacatgacttacacctcaataaaccgaagtttcaaggaacc
accccagcagggaaccccacctgcttacctagccccataccccccacccc
tgctagcagttcccagtgtgcttcaaatagcaatgaggagacctgatact
gaacatgcatcatcgtgctcagggcaagttcttggtgcacacgacttcct
cagctctcagaaccaacctggggagtgtcagaactaattttcaggtgaca
tcacgaggttcagagaggttgagcaacttgcttgggccaaggacaggtga
ccagcaagtgtgggagccagaactcaaccaggacttcttactatgatgcc
tgccttgtcccacccacaaaaggcccatagtagctgctgaatagcatcag
gtacttcttacacttaagtgaggcccagagagaccaaccgatgtgctttt
agccagtaagaagcaacaccgagatttgaaacacttgattccaaagttct
ctccatttttttgttcacaaagtcctgggattccctcccaccccatcctc
aaggtggcatgatatgcccatccagtggccttagtcaagactaccagagg
caaagcccgaggaagaaataggtctcatgtctaatatcttcaaacatctt
gctcagtttgaaaaaggaaagcccaagtttatagagatggacttttccca
ggcatccatgcagtactggggcaccactggctttcctggctcaggcagca
tgactcctctcaactcctgaagttctctacgcatttcctga
tttgcccagcacctgttttcttctctcacagttctctagcccacctccct
ttgctggcagaagtctaagctaagtctaagaagatcttgctactaaaaca
cctgatgatttgaaaccaaatccttaaaatctagtatttactaaaacctt
ctgtagctacaatgatacccacaagatgacacactgtttggaagaaggta
gcctgagtccttttgctttaaatataccttctaagtttttatccagtggc
catctggtagcattgaaatgactaatgttttcctccaaatctcaagtgaa
aaacaaaaacaaaaacaaaaaacctaacaaccaagctgattgtgaagcat
aaaggtcagggagatggcctgcgagtaagggtgtttgctgtgaaggcgtg
aggacctgggctcgggtccctagcacctagctgagcatggctacaccaca
gcacctgcacagggtgggagagggagggtggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58921693_58922836
seq2: B6Ng01-026K02.b_38_1178

seq1  GAATTCCTGGCAGGCTCTGTGTCTCCCTGCGTCAGAGCTAATGAGGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCAGGCTCTGTGTCTCCCTGCGTCAGAGCTAATGAGGAGCA  50

seq1  GAATAGGAAGCACAAACGAAGTCTCCACAATCCCCTAGCAGAAAGAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGAAGCACAAACGAAGTCTCCACAATCCCCTAGCAGAAAGAGCCT  100

seq1  GAGAGCCTAGGCAGGGAACTTACCTCCTATTCGATGGATCACTGAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTAGGCAGGGAACTTACCTCCTATTCGATGGATCACTGAGGCTC  150

seq1  CCTGCCTGACAAGGCATGGCCTAGACCTTGGGATTCCCTACCATCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGACAAGGCATGGCCTAGACCTTGGGATTCCCTACCATCTGAGG  200

seq1  CGGGGTCTTCTACAAACCAGAGGGATCCTGTTTGTAACTCTTCCAATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCTTCTACAAACCAGAGGGATCCTGTTTGTAACTCTTCCAATGAT  250

seq1  GAAATTCTCCGAGGCTGGAACTATTCTACCCGTTGATATAATCGTGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTCCGAGGCTGGAACTATTCTACCCGTTGATATAATCGTGGTTA  300

seq1  CATAACTATATTATCTTTGTCAAAATCCACGGAACAGAATACCTGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTATATTATCTTTGTCAAAATCCACGGAACAGAATACCTGGAAAG  350

seq1  CTTCCACCTCACATGACTTACACCTCAATAAACCGAAGTTTCAAGGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTCACATGACTTACACCTCAATAAACCGAAGTTTCAAGGAACC  400

seq1  ACCCCAGCAGGGAACCCCACCTGCTTACCTAGCCCCATACCCCCCACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCAGGGAACCCCACCTGCTTACCTAGCCCCATACCCCCCACCCC  450

seq1  TGCTAGCAGTTCCCAGTGTGCTTCAAATAGCAATGAGGAGACCTGATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCAGTTCCCAGTGTGCTTCAAATAGCAATGAGGAGACCTGATACT  500

seq1  GAACATGCATCATCGTGCTCAGGGCAAGTTCTTGGTGCACACGACTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCATCATCGTGCTCAGGGCAAGTTCTTGGTGCACACGACTTCCT  550

seq1  CAGCTCTCAGAACCAACCTGGGGAGTGTCAGAACTAATTTTCAGGTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCAGAACCAACCTGGGGAGTGTCAGAACTAATTTTCAGGTGACA  600

seq1  TCACGAGGTTCAGAGAGGTTGAGCAACTTGCTTGGGCCAAGGACAGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGGTTCAGAGAGGTTGAGCAACTTGCTTGGGCCAAGGACAGGTGA  650

seq1  CCAGCAAGTGTGGGAGCCAGAACTCAACCAGGACTTCTTACTATGATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGTGTGGGAGCCAGAACTCAACCAGGACTTCTTACTATGATGCC  700

seq1  TGCCTTGTCCCACCCAC-AAAGGCCCATAGTAGCTGCTGAATAGCATCAG  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCCTTGTCCCACCCACAAAAGGCCCATAGTAGCTGCTGAATAGCATCAG  750

seq1  GTACTTCTTACACTTAAGTGAGGCCCAGAGAGACCAACCGATGTGC-TTT  798
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTACTTCTTACACTTAAGTGAGGCCCAGAGAGACCAACCGATGTGCTTTT  800

seq1  AGCCAGTAAGAAGCAACACCGAGATTTGAAACAC-TGATTCCAAAGTTCT  847
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCCAGTAAGAAGCAACACCGAGATTTGAAACACTTGATTCCAAAGTTCT  850

seq1  CTCCATTTTTTTGTTCACAAAGTCCTGGGATTCCCTCCCACCCCATCCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTTTTGTTCACAAAGTCCTGGGATTCCCTCCCACCCCATCCTC  900

seq1  AAGGGTGGCATGATTATGCCCATCCAGTGGCCTTAGTCAAGACTACCAGA  947
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AA-GGTGGCATGA-TATGCCCATCCAGTGGCCTTAGTCAAGACTACCAGA  948

seq1  GGCAAAGCCCGAGGAAGAAATAGGTCTCATGTCTTAATATCTTCAAAACA  997
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GGCAAAGCCCGAGGAAGAAATAGGTCTCATGTC-TAATATCTTC-AAACA  996

seq1  TCTTGCTCAGTTTGAGACAGGAAAGCCCAAGGTTATAGAGATGGACCTTT  1047
      ||||||||||||||| | ||||||||||||| |||||||||||||| |||
seq2  TCTTGCTCAGTTTGAAAAAGGAAAGCCCAAGTTTATAGAGATGGACTTTT  1046

seq1  CCCAAGGCATCCATGCAGTACTGGGGGCACACCTGGCTTTCCTGGCTCAG  1097
      ||| |||||||||||||||||| |||||||  ||||||||||||||||||
seq2  CCC-AGGCATCCATGCAGTACT-GGGGCACCACTGGCTTTCCTGGCTCAG  1094

seq1  GCAAGCATGACTCCCTCCAACTCCTG-AGTTCTCTCAGCATTTTCTGA  1144
      || |||||||||||   ||||||||| ||||||||  |||||| ||||
seq2  GC-AGCATGACTCCTCTCAACTCCTGAAGTTCTCTACGCATTTCCTGA  1141

seq1: chr19_59074905_59075395
seq2: B6Ng01-026K02.g_67_557 (reverse)

seq1  TCCCCCACCCTCCCTCTCCCACCCTGTGCAGGTGCTGTGGTGTAGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCTCCCTCTCCCACCCTGTGCAGGTGCTGTGGTGTAGCCATG  50

seq1  CTCAGCTAGGTGCTAGGGACCCGAGCCCAGGTCCTCACGCCTTCACAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTAGGTGCTAGGGACCCGAGCCCAGGTCCTCACGCCTTCACAGCA  100

seq1  AACACCCTTACTCGCAGGCCATCTCCCTGACCTTTATGCTTCACAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTACTCGCAGGCCATCTCCCTGACCTTTATGCTTCACAATCAG  150

seq1  CTTGGTTGTTAGGTTTTTTGTTTTTGTTTTTGTTTTTCACTTGAGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGTTAGGTTTTTTGTTTTTGTTTTTGTTTTTCACTTGAGATTTG  200

seq1  GAGGAAAACATTAGTCATTTCAATGCTACCAGATGGCCACTGGATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAACATTAGTCATTTCAATGCTACCAGATGGCCACTGGATAAAAA  250

seq1  CTTAGAAGGTATATTTAAAGCAAAAGGACTCAGGCTACCTTCTTCCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGGTATATTTAAAGCAAAAGGACTCAGGCTACCTTCTTCCAAAC  300

seq1  AGTGTGTCATCTTGTGGGTATCATTGTAGCTACAGAAGGTTTTAGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCATCTTGTGGGTATCATTGTAGCTACAGAAGGTTTTAGTAAAT  350

seq1  ACTAGATTTTAAGGATTTGGTTTCAAATCATCAGGTGTTTTAGTAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTTTAAGGATTTGGTTTCAAATCATCAGGTGTTTTAGTAGCAAG  400

seq1  ATCTTCTTAGACTTAGCTTAGACTTCTGCCAGCAAAGGGAGGTGGGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTAGACTTAGCTTAGACTTCTGCCAGCAAAGGGAGGTGGGCTAG  450

seq1  AGAACTGTGAGAGAAGAAAACAGGTGCTGGGCAAAGAATTC  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTGAGAGAAGAAAACAGGTGCTGGGCAAAGAATTC  491