BAC Information

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BAC

Clone NameB6Ng01-026O24
Chromosome19 (Build37)
Map Location 15,641,994 - 15,814,501
singlet/doubletdoublet
Overlap geneLOC667482
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026O24.bB6Ng01-026O24.g
ACCDH857823DH857824
length985999
definitionDH857823|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O24, 5' end.DH857824|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,641,994 - 15,642,985)(15,813,499 - 15,814,501)
sequence
ttctttctgcacatgtacacacaaacatacacacacctgggtctatatat
acacataccactttttaaattaattgttaataggcatgtaaactgattct
atacccttttcttggttcagtttgtttgttgtttgtttgtttgtttgttt
tttgagacaggatttctttgtgtagccctggatgccctagaactcactct
gcagaccaggctggccttgaactcagaaatctacccacctcagctcccaa
agtgctgggaccaaaggtgtgtgccactgtagccagcttgattctgtatc
ttaagtattctcttaaattcaaaaataaatatggatgtgtagatttcttc
tttgaatgaatgtttcatttcctttatataccctgtataatagctgtatg
tatgtagttctatgttgttttaatataaactaaagatcagtgttttctat
agtaactgcacaatttacattgtcaacaatgggatataaggtttcctttt
attcacaaccttactagcatttgattcttactgttgatgttgttgtagtt
gttgctgttcttcttgttgttgtttgtaaaagccattccaactgggatca
aacatcatcaacattttgctgctcatttccctgttgggtaacattattca
gcatctttatatacttattggccaattatatttttttcttttgagaatta
tctattcaaatcattgactcatttataaattctgttaccatctgaggcta
ttgtaagttctggatattaagcctctgtcagattgtccatccaagaaggc
tttgctcctgtagctgtcttctcccctctcttaatttactaggttctgat
atcttaactttaatctaacttgttcatgtatatttaattcccttgggctt
tccccatgtttgtccttctatgccctcggctgaaaatcttcttcatctaa
catcttttccagtagtttttctttcttgcgatcaa
gaattcttcttcttttaggaccttgaggtatatcattagcttatttattt
atgatcttcctgtttttttaatgtaaatactctcaggtatatgttttcct
cttagaactgctttgatcacatcccaagcgtttctgtttccatttttatt
tgctagtatgataatgttaattccctcattgacttgatccactaccagtc
aattccacaatgcattatatcctcatgtatagtttgtagtctttgtagtt
tttttgctatgatttctagtttataattattgatctgacgagataaatta
ttttgaattttgtagtttaattttttcattaatgtatcgacttattcact
ttacatcttgattgtagcctccaccttcctagtcccctcacacagccact
cccctcattccccaccttctttctcctctgagaaagggaaatacgctctg
ggtattgatccatcctagcacatcaagtcactcccatgtaggcaacacaa
tggagactgtgtccaatgatacctttgctgaatatacccctcttacttta
ttactttatgtatgctttcagggtctaaattatgtcatcatgtgctaaac
tgtcttttctttttcttttttcttttcttttttctctcctctccttcccc
atataagctcatatatttgtatgcttgtttcccagttgttgaactgtttg
ggaagattaggaggagtgaccttgttggcataggtgtgtccttttagaat
gaggtgcattgctggggctgaattagaggcttcaaagctctctctgtgca
cgctgccttaggatcaggatgcaaagctctcagctatgcttcaatccctt
gcctacctgcctcccacatgacataatggactaaccctctgaaactgtag
tgagccctcattaatgctccctttacaggagttactttggtcccagtgtc
tattcatactggtaagaaatctggagttactccaaattattgcctttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15641994_15642985
seq2: B6Ng01-026O24.b_51_1035

seq1  TTCTTTCTGCACATGTACACACAAACATACACACACCTGGGTCTATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGCACATGTACACACAAACATACACACACCTGGGTCTATATAT  50

seq1  ACACATACCACTTTTTAAATTAATTGTTAATAGGCATGTAAACTGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACCACTTTTTAAATTAATTGTTAATAGGCATGTAAACTGATTCT  100

seq1  ATACCCTTTTCTTGGTTCAGTTTGTTTGTTGTTTGTTTGTTTGTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTTTCTTGGTTCAGTTTGTTTGTTGTTTGTTTGTTTGTTTGTTT  150

seq1  TTTGAGACAGGATTTCTTTGTGTAGCCCTGGATGCCCTAGAACTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGATTTCTTTGTGTAGCCCTGGATGCCCTAGAACTCACTCT  200

seq1  GCAGACCAGGCTGGCCTTGAACTCAGAAATCTACCCACCTCAGCTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAGGCTGGCCTTGAACTCAGAAATCTACCCACCTCAGCTCCCAA  250

seq1  AGTGCTGGGACCAAAGGTGTGTGCCACTGTAGCCAGCTTGATTCTGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGACCAAAGGTGTGTGCCACTGTAGCCAGCTTGATTCTGTATC  300

seq1  TTAAGTATTCTCTTAAATTCAAAAATAAATATGGATGTGTAGATTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATTCTCTTAAATTCAAAAATAAATATGGATGTGTAGATTTCTTC  350

seq1  TTTGAATGAATGTTTCATTTCCTTTATATACCCTGTATAATAGCTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGAATGTTTCATTTCCTTTATATACCCTGTATAATAGCTGTATG  400

seq1  TATGTAGTTCTATGTTGTTTTAATATAAACTAAAGATCAGTGTTTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTTCTATGTTGTTTTAATATAAACTAAAGATCAGTGTTTTCTAT  450

seq1  AGTAACTGCACAATTTACATTGTCAACAATGGGATATAAGGTTTCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGCACAATTTACATTGTCAACAATGGGATATAAGGTTTCCTTTT  500

seq1  ATTCACAACCTTACTAGCATTTGATTCTTACTGTTGATGTTGTTGTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAACCTTACTAGCATTTGATTCTTACTGTTGATGTTGTTGTAGTT  550

seq1  GTTGCTGTTCTTCTTGTTGTTGTTTGTAAAAGCCATTCCAACTGGGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTCTTCTTGTTGTTGTTTGTAAAAGCCATTCCAACTGGGATCA  600

seq1  AACATCATCAACATTTTGCTGCTCATTTCCCTGTTGGGTAACATTATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATCAACATTTTGCTGCTCATTTCCCTGTTGGGTAACATTATTCA  650

seq1  GCATCTTTATATACTTATTGGCCAATTATATTTTTTTCTTTTGAGAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTATATACTTATTGGCCAATTATATTTTTTTCTTTTGAGAATTA  700

seq1  TCTATTCAAATCATTGACTCATTTATAAATTCTGTTACCATCTGAGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCAAATCATTGACTCATTTATAAATTCTGTTACCATCTGAGGCTA  750

seq1  TTGTAAGTTCTGGATATTAAGCCTCTGTCAGATTGTCCATCCAAGAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTTCTGGATATTAAGCCTCTGTCAGATTGTCCATCCAAGAAGGC  800

seq1  TTTGCTCCTGTAGCTGTC-TCTTCCCTCTCTTAATTTACTAGGTTCTGAT  849
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  TTTGCTCCTGTAGCTGTCTTCTCCCCTCTCTTAATTTACTAGGTTCTGAT  850

seq1  ATTCTTAACTTTAATCTAACTTGTTTCATGTATATTTTAATTCCCTTGTG  899
      | ||||||||||||||||||||| |||||||||| ||||||||||||| |
seq2  A-TCTTAACTTTAATCTAACTTG-TTCATGTATA-TTTAATTCCCTTG-G  896

seq1  GCTTTCCCCCATGTTTTGTCCTTCTATGCCTTCTGCTGAATAATCTTCTT  949
      ||||| ||||||| |||||||||||||||| || |||||| |||||||||
seq2  GCTTT-CCCCATG-TTTGTCCTTCTATGCCCTCGGCTGAA-AATCTTCTT  943

seq1  CGATCTAACATCTTCTCAAGTAGTTTTTCTTCATTGCGATCAA  992
      | |||||||||||| || |||||||||||||  ||||||||||
seq2  C-ATCTAACATCTTTTCCAGTAGTTTTTCTTTCTTGCGATCAA  985

seq1: chr19_15813499_15814501
seq2: B6Ng01-026O24.g_66_1062 (reverse)

seq1  AAAGGCATAAATATTGGAGTAACTTCAGATTTCTTACCAGTATGAATAGA  50
      |||||||  ||| ||||||||||| |||||||||||||||||||||||||
seq2  AAAGGCAATAAT-TTGGAGTAACTCCAGATTTCTTACCAGTATGAATAGA  49

seq1  CACTGGGACCAAGGTAACTCCTGTAAAAGGGAGCATTTAATTGAGGGCTC  100
      |||||||||||| ||||||||||| ||||||||||||  | |||||||||
seq2  CACTGGGACCAAAGTAACTCCTGT-AAAGGGAGCATT--AATGAGGGCTC  96

seq1  ACCTACAGTTTCAGAGGGTTAGTCCATTATTGTCATGGTGGGAGGCAGGT  150
      | ||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  A-CTACAGTTTCAGAGGGTTAGTCCATTA-TGTCAT-GTGGGAGGCAGGT  143

seq1  AGGCAAGGGATTGAAGCATAGCTGAGAGCTTTGCATCCTGATCCT-AGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGCAAGGGATTGAAGCATAGCTGAGAGCTTTGCATCCTGATCCTAAGGC  193

seq1  AGCGTGCACAGAGAGAGCTTTGAAGCCTCTAATTCAGCCCCAGCAATGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGCACAGAGAGAGCTTTGAAGCCTCTAATTCAGCCCCAGCAATGCA  243

seq1  CCTCATTCTAAAAGGACACACCTATGCCAACAAGGTCACTCCTCCTAATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTAAAAGGACACACCTATGCCAACAAGGTCACTCCTCCTAATC  293

seq1  TTCCCAAACAGTTCAACAACTGGGAAACAAGCATACAAATATATGAGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACAGTTCAACAACTGGGAAACAAGCATACAAATATATGAGCTT  343

seq1  ATATGGGGAAGGAGAGGAGAGAAAAAAGAAAAGAAAAAAGAAAAAGAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGGAAGGAGAGGAGAGAAAAAAGAAAAGAAAAAAGAAAAAGAAAA  393

seq1  GACAGTTTAGCACATGATGACATAATTTAGACCCTGAAAGCATACATAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTAGCACATGATGACATAATTTAGACCCTGAAAGCATACATAAA  443

seq1  GTAATAAAGTAAGAGGGGTATATTCAGCAAAGGTATCATTGGACACAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAGTAAGAGGGGTATATTCAGCAAAGGTATCATTGGACACAGTC  493

seq1  TCCATTGTGTTGCCTACATGGGAGTGACTTGATGTGCTAGGATGGATCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTGTTGCCTACATGGGAGTGACTTGATGTGCTAGGATGGATCAA  543

seq1  TACCCAGAGCGTATTTCCCTTTCTCAGAGGAGAAAGAAGGTGGGGAATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAGCGTATTTCCCTTTCTCAGAGGAGAAAGAAGGTGGGGAATGA  593

seq1  GGGGAGTGGCTGTGTGAGGGGACTAGGAAGGTGGAGGCTACAATCAAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGGCTGTGTGAGGGGACTAGGAAGGTGGAGGCTACAATCAAGAT  643

seq1  GTAAAGTGAATAAGTCGATACATTAATGAAAAAATTAAACTACAAAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGAATAAGTCGATACATTAATGAAAAAATTAAACTACAAAATTC  693

seq1  AAAATAATTTATCTCGTCAGATCAATAATTATAAACTAGAAATCATAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTATCTCGTCAGATCAATAATTATAAACTAGAAATCATAGCA  743

seq1  AAAAAACTACAAAGACTACAAACTATACATGAGGATATAATGCATTGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTACAAAGACTACAAACTATACATGAGGATATAATGCATTGTGG  793

seq1  AATTGACTGGTAGTGGATCAAGTCAATGAGGGAATTAACATTATCATACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTGGTAGTGGATCAAGTCAATGAGGGAATTAACATTATCATACT  843

seq1  AGCAAATAAAAATGGAAACAGAAACGCTTGGGATGTGATCAAAGCAGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAAAAATGGAAACAGAAACGCTTGGGATGTGATCAAAGCAGTTC  893

seq1  TAAGAGGAAAACATATACCTGAGAGTATTTACATTAAAAAAACAGGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAAAACATATACCTGAGAGTATTTACATTAAAAAAACAGGAAGA  943

seq1  TCATAAATAAATAAGCTAATGATATACCTCAAGGTCCTAAAAGAAGAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATAAATAAGCTAATGATATACCTCAAGGTCCTAAAAGAAGAAGA  993

seq1  ATTC  1003
      ||||
seq2  ATTC  997