BAC Information

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BAC

Clone NameB6Ng01-027N06
Chromosome19 (Build37)2 (Build37)
Map Location 38,759,658 - 38,759,784124,226,117 - 124,227,215
singlet/doubletsingletsinglet
Overlap genePlce1
Upstream geneCyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
Downstream geneEG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027N06.bB6Ng01-027N06.g
ACCDH858469DH858470
length1261,091
definitionDH858469|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N06, 5' end.DH858470|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,759,658 - 38,759,784)(124,226,117 - 124,227,215)
sequence
tctctctctctctctctctctttctttcattctttctttctttctttctt
tctttctttctttctttttagaaatctctctctctctctctctcacacac
ttgagtagtttattctttctttcttt
gaattctcttactctttccacactttacaacttttatagaactggcagca
tagaggagcaatggtggacctagagagatggggcaatgtgcccacagtca
ggggttagttgctaaagaagccacaactagagcccaggtctcctgaatct
cagtgtttggtttctccaacacattgccctgctcttctcaggatcataga
gaaaagcaaaggtttgacccatctgtctaatgcagaacatttagtgggta
gagtaagaagatactgttaaggttttgttagtagtagaaggctttacaag
gatatctgtcaaatgttcatgcatcaaattatgttctttctagcactgag
atttttatatattgagcacaggaaatgtttaactctgaactaatgcagac
actgtgtgaaatgagaaatgattgttgaaaagcttcccaaactgtcagag
cttcagaagtctcctctgaagactttgaaagccacccctgttcttggcat
taccatgcatactcatctaaaatgatgtcaactgctgatccactgagagt
ctgttctgcccctgttaaatttctcaggtgatttaaaaggccagtaatga
cttttcttagggtaaaggtctgttgataaagcactaacttcagtgctcgc
ctgaactgagtcttttatgatttggtcatagggtgttcttctccaacacc
agcacaagatggccctcgttgttatctcagctttatcatcaaggagaaag
agacttagagaggtccagtaacctaaccaggcatcaaattaataagtgac
agaactgtgtcttaccctcaggctgttaacctctaccccctagttgcttc
acgctcagatcgaagaacatatatgtctgaccttcttaattaagcacttt
agttgtgccatgtactggtgataaattccacggttgcagctctcagatgg
acagaggccaagcataacatcaatctgccagacaccgaggctgctggcag
ttcagtggtggggaaggacaaaccagccatctggtccacctgtgtgggga
ggtaagctgtcattctcaactgtgggaactggagagaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38759658_38759784
seq2: B6Ng01-027N06.b_53_176 (reverse)

seq1  AAAGAAAGAAAGAAAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAG  50
          |||||||||||||     | |||  |   |||   |  ||| ||||
seq2  ----AAAGAAAGAAAGA-----ATAAACTACTCAAGTGTGTGAGAGAGAG  41

seq1  AGAGAGAGAGA----AAGAGAGAAAGAAAGAAAG--AGAGAGAGAGAGAG  94
      |||||||||||     | | ||||||||||||||  ||| ||| ||| ||
seq2  AGAGAGAGAGATTTCTAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  91

seq1  AAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGA  127
      |||||| ||||||||||||||||||||||||||
seq2  AAAGAATGAAAGAAAGAGAGAGAGAGAGAGAGA  124

seq1: chr2_124226117_124227215
seq2: B6Ng01-027N06.g_68_1158

seq1  GAATTCTCTTACTCTTTCCACACTTTACAACTTTTATAGAACTGGCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACTCTTTCCACACTTTACAACTTTTATAGAACTGGCAGCA  50

seq1  TAGAGGAGCAATGGTGGACCTAGAGAGATGGGGCAATGTGCCCACAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGCAATGGTGGACCTAGAGAGATGGGGCAATGTGCCCACAGTCA  100

seq1  GGGGTTAGTTGCTAAAGAAGCCACAACTAGAGCCCAGGTCTCCTGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTAGTTGCTAAAGAAGCCACAACTAGAGCCCAGGTCTCCTGAATCT  150

seq1  CAGTGTTTGGTTTCTCCAACACATTGCCCTGCTCTTCTCAGGATCATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTGGTTTCTCCAACACATTGCCCTGCTCTTCTCAGGATCATAGA  200

seq1  GAAAAGCAAAGGTTTGACCCATCTGTCTAATGCAGAACATTTAGTGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAAGGTTTGACCCATCTGTCTAATGCAGAACATTTAGTGGGTA  250

seq1  GAGTAAGAAGATACTGTTAAGGTTTTGTTAGTAGTAGAAGGCTTTACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGAAGATACTGTTAAGGTTTTGTTAGTAGTAGAAGGCTTTACAAG  300

seq1  GATATCTGTCAAATGTTCATGCATCAAATTATGTTCTTTCTAGCACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGTCAAATGTTCATGCATCAAATTATGTTCTTTCTAGCACTGAG  350

seq1  ATTTTTATATATTGAGCACAGGAAATGTTTAACTCTGAACTAATGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATATATTGAGCACAGGAAATGTTTAACTCTGAACTAATGCAGAC  400

seq1  ACTGTGTGAAATGAGAAATGATTGTTGAAAAGCTTCCCAAACTGTCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGAAATGAGAAATGATTGTTGAAAAGCTTCCCAAACTGTCAGAG  450

seq1  CTTCAGAAGTCTCCTCTGAAGACTTTGAAAGCCACCCCTGTTCTTGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAGTCTCCTCTGAAGACTTTGAAAGCCACCCCTGTTCTTGGCAT  500

seq1  TACCATGCATACTCATCTAAAATGATGTCAACTGCTGATCCACTGAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCATACTCATCTAAAATGATGTCAACTGCTGATCCACTGAGAGT  550

seq1  CTGTTCTGCCCCTGTTAAATTTCTCAGGTGATTTAAAAGGCCAGTAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGCCCCTGTTAAATTTCTCAGGTGATTTAAAAGGCCAGTAATGA  600

seq1  CTTTTCTTAGGGTAAAGGTCTGTTGATAAAGCACTAACTTCAGTGCTCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTAGGGTAAAGGTCTGTTGATAAAGCACTAACTTCAGTGCTCGC  650

seq1  CTGAACTGAGTC-TTTATGATTTGGTCATAGGGTGTTCTTCTCCAACACC  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGAGTCTTTTATGATTTGGTCATAGGGTGTTCTTCTCCAACACC  700

seq1  AGCACAAGATGGCCCTCGTTGTTATCTCAGCTTTATCATCAAGGAGAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGATGGCCCTCGTTGTTATCTCAGCTTTATCATCAAGGAGAAAG  750

seq1  AGACTTAGAGAGGTCCAGTAACCTAACCAGGCATCAAATTAATAAGTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGAGAGGTCCAGTAACCTAACCAGGCATCAAATTAATAAGTGAC  800

seq1  AGAACTGTGTCTTACCCTCAGGCTGTTAACCTCTACCCCCTAG-TGCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAACTGTGTCTTACCCTCAGGCTGTTAACCTCTACCCCCTAGTTGCTTC  850

seq1  ACGCTCAGATCGAAGGACATATATGTCTGACCTTCTT-ATTAAGCACTTA  897
      ||||||||||||||| ||||||||||||||||||||| ||||||||||| 
seq2  ACGCTCAGATCGAAGAACATATATGTCTGACCTTCTTAATTAAGCACTTT  900

seq1  AGTTGTGCCATGTACT-GTGATAAATTCCACGGTTGCAGCTCTCAAGATG  946
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  AGTTGTGCCATGTACTGGTGATAAATTCCACGGTTGCAGCTCTC-AGATG  949

seq1  GAACAAGAGGCCAAGCCATACATTCAATCCTGCCCAGACACCGAGGCTGC  996
      ||   |||||||||| ||||   ||||| ||| |||||||||||||||||
seq2  GA--CAGAGGCCAAG-CATAACATCAAT-CTG-CCAGACACCGAGGCTGC  994

seq1  TGGCAGTTCCAGTGGTGGGGAAGGAGCAGAGCAAGCCATCTTGTTCACAC  1046
      |||||||| |||||||||||||||| || | | |||||||| || ||| |
seq2  TGGCAGTT-CAGTGGTGGGGAAGGA-CA-AACCAGCCATCTGGTCCAC-C  1040

seq1  TGTGTGTGGAGGTAAAGCTGCAGTTCTCAGACTGT-GGACCTGGAGAGAT  1095
      |||||| |||||| ||||||   |||||| ||||| ||| ||||||||| 
seq2  TGTGTGGGGAGGT-AAGCTGTCATTCTCA-ACTGTGGGAACTGGAGAGA-  1087

seq1  GGCT  1099
      ||||
seq2  GGCT  1091