BAC Information

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BAC

Clone NameB6Ng01-028J08
Chromosome19 (Build37)
Map Location 41,812,137 - 41,945,005
singlet/doubletdoublet
Overlap geneSlit1, Arhgap19, Frat1, Frat2, Rrp12
Upstream geneEntpd1, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181
Downstream geneLOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028J08.bB6Ng01-028J08.g
ACCDH859023DH859024
length1,0921,124
definitionDH859023|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J08, 5' end.DH859024|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,812,137 - 41,813,251)(41,943,879 - 41,945,005)
sequence
gaattcacccatgaaattcttcactcctcaggtggatctgctccccaccc
ccaaaaccgtggcactctcctctgtgtgtgcccccaaatgtgctcacccc
tcctcctgtccctcctttccacctgccttccagactcagactctatgttg
gctccagccccgccccatctctctcagccccgcccctctcagcgcccccc
ccgccccgcccctctcagtaccaccactgagtgcctctgtctcccatcaa
tcaatcaacactcatctcctcactggctacaggctgcacagtagtctcag
ccctttacctgaattatttcatttcaaattacagccctacaagctaaatg
tcatcactggtcccaggaaatcgagtcactgctgagctgccctaagtctc
ccaggtggctgctgattcaaactaggccattgtcacaccaatgcctgcct
gcgctggaagtcgctgtgctccgggtccctacagatgtccttgcagactt
attctttctctcccaccccgctggaagctctcagaggaaccagcccatac
ccggacctctcttgatgcgatgcacacacggcaggtgcccaacagctgtt
tgttggccacgggctgggttccagaaaggggaggagggggtggcaagctc
catcaaaaacaggagccaattctccacctccagcacagcccagctccctg
gctactgcccaaggcccggccgtcatctgctctgggtaataagtattttg
tatggcgataattacagcatttgggaagaaaatcccattaagcagagccc
tgtcgagctgctaatgccggcacagaactggagcggcaactccgccaaac
gccctcccggctgctcctgataacagataacgcagggggctgctgtccct
acgtcgacagggggcccaagagagcatggcactttggcagtacgggccat
ctctggcaacatgtccgacgggtgctgaaatgacagcataattatatctg
ggtgtgatccaagctcctcgtcactgctgagagaacatgtaagaactgct
agatccagcactgattgtctcgaatccttttatgtctggagc
gaattctatagagcaggctggccttgaactcagagatcctcctgcctctg
cctcccgagtgctgggattaaaggcgtgtgccaccactgcccagcttgac
ttttttttttaaatttttttaaaagatttatttattatatgtaggtacac
tgtagctgtcttcagatacagcagaagagggtgtcagatctcattacgga
tggttgtgagccaccatgtggttgctgggacttgaactcagggcctttgg
aagagcagtcgggtgctcttacctgctgagccatctcaccagcccccccc
cctttaatgtatttattatatgtaagtacactgtagctgtcttcagactc
cccagaagagggcatcagatctcagccctttgacttttttttaatgcagt
atatatacaacgatttaaacaaaacttgaggaaaccccctcactgtgcat
ggtgtgagcatctcttctgcttctttttccttattccttttctgttgttc
agttcggtatggtttggtttttaatggaaaccagctgaaccgtaagctga
tttagtgacaggcagagccatgccttctaagagagtgccagccttctcaa
gcccagtgtccactcagtaacggagcattgcctggagtgcattctattcg
taggactgtggggcgagcacctgccttctggcttctcggcttttgctgct
gagctgtgtgcctttgattcacctgacttcctcacacagactcttttgcc
cctcacttgcctgctgcttgtctgctggctcccgtgtatgtgcttaatat
aaaggtggcttgtgctgttctttagactgtctcttctccacttccctccc
acccttcctgcggacttgatgcccgcagttctctgtggctggggagccct
cttctgctccttacgatcccacactatttctttctgttgtctctagggtt
ctctagccactgcccctcatctcggacaagaacgctcaacatgccagtgc
taattcttctgtacatctttaggtcattggctgggtattttcctgcaggg
ttgggactaaacccagcacttggacttgctaggaagtgctccactgaact
tcatctcagcccaacatgcggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41812137_41813251
seq2: B6Ng01-028J08.b_45_1136

seq1  GAATTCACCCATGAAATTCTTCACTCCTCAGGTGGATCTGCTCCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCATGAAATTCTTCACTCCTCAGGTGGATCTGCTCCCCACCC  50

seq1  CCAAAACCGTGGCACTCTCCTCTGTGTGTGCCCCCAAATGTGCTCACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCGTGGCACTCTCCTCTGTGTGTGCCCCCAAATGTGCTCACCCC  100

seq1  TCCTCCTGTCCCTCCTTTCCACCTGCCTTCCAGACTCAGACTCTATGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGTCCCTCCTTTCCACCTGCCTTCCAGACTCAGACTCTATGTTG  150

seq1  GCTCCAGCCCCGCCCCATCTCTCTCAGCCCCGCCCCTCTCAGCGCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGCCCCGCCCCATCTCTCTCAGCCCCGCCCCTCTCAGCGCCCCCC  200

seq1  CCGCCCCGCCCCTCTCAGTACCACCACTGAGTGCCTCTGTCTCCCATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCGCCCCTCTCAGTACCACCACTGAGTGCCTCTGTCTCCCATCAA  250

seq1  TCAATCAACACTCATCTCCTCACTGGCTACAGGCTGCACAGTAGTCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAACACTCATCTCCTCACTGGCTACAGGCTGCACAGTAGTCTCAG  300

seq1  CCCTTTACCTGAATTATTTCATTTCAAATTACAGCCCTACAAGCTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACCTGAATTATTTCATTTCAAATTACAGCCCTACAAGCTAAATG  350

seq1  TCATCACTGGTCCCAGGAAATCGAGTCACTGCTGAGCTGCCCTAAGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTGGTCCCAGGAAATCGAGTCACTGCTGAGCTGCCCTAAGTCTC  400

seq1  CCAGGTGGCTGCTGATTCAAACTAGGCCATTGTCACACCAATGCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGCTGCTGATTCAAACTAGGCCATTGTCACACCAATGCCTGCCT  450

seq1  GCGCTGGAAGTCGCTGTGCTCCGGGTCCCTACAGATGTCCTTGCAGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGAAGTCGCTGTGCTCCGGGTCCCTACAGATGTCCTTGCAGACTT  500

seq1  ATTCTTTCTCTCCCACCCCGCTGGAAGCTCTCAGAGGAACCAGCCCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTCTCCCACCCCGCTGGAAGCTCTCAGAGGAACCAGCCCATAC  550

seq1  CCGGACCTCTCTTGATGCGATGCACACACGGCAGGTGCCCAACAGCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACCTCTCTTGATGCGATGCACACACGGCAGGTGCCCAACAGCTGTT  600

seq1  TGTTGGCCACGGGCTGGGTTCCAGAAAGGGGAGGAGGGGGTGGCAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCACGGGCTGGGTTCCAGAAAGGGGAGGAGGGGGTGGCAAGCTC  650

seq1  CATCAAAAACAGGAGCCAATTCTCCACCTCCAGCACAGCCCAGCTCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAACAGGAGCCAATTCTCCACCTCCAGCACAGCCCAGCTCCCTG  700

seq1  GCTACTGCCCAAGGCCCGGCCGTCATCTGCTCTGGGTAATAAGTA-TTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTACTGCCCAAGGCCCGGCCGTCATCTGCTCTGGGTAATAAGTATTTTG  750

seq1  TATGGCGATAATTACAGCATTTGGGAAGAAAATCCCATTAAGCAAGAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATGGCGATAATTACAGCATTTGGGAAGAAAATCCCATTAAGC-AGAGCC  799

seq1  CTGCCGAGCTGCTAATGCCGGCACAGAACTGGAGGCGGCAACTCCGCCAA  849
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTCGAGCTGCTAATGCCGGCACAGAACTGGA-GCGGCAACTCCGCCAA  848

seq1  ACGCCCTCCCGGCTGCTCCTGATAACGGATAACGCAGGGGGCTGCCTGTC  899
      |||||||||||||||||||||||||| ||||||||||||||||| |||| 
seq2  ACGCCCTCCCGGCTGCTCCTGATAACAGATAACGCAGGGGGCTG-CTGT-  896

seq1  CCCAACGTCGCACATGGGGCCCCAAGAGAGCATGGCAACTTTGGGCAGTA  949
      ||| |||||| ||| |||| |||||||||||||||| ||||| |||||||
seq2  CCCTACGTCG-ACA-GGGGGCCCAAGAGAGCATGGC-ACTTT-GGCAGTA  942

seq1  CGGGCCACCTCCTGGCACATTGTTCCAAAGGGGTGCTGAAAAAGGACAGC  999
      ||||||| || ||||||   |||  |  | ||||||||  ||| ||||||
seq2  CGGGCCATCT-CTGGCAACATGT--CCGACGGGTGCTG--AAATGACAGC  987

seq1  ATACTTATATTCCGGTGTGATCCAGGGCTCCTCGCCACTGCCTGGTGAGA  1049
      ||| ||||||   |||||||||||  |||||||| ||||||    |||||
seq2  ATAATTATATCTGGGTGTGATCCA-AGCTCCTCGTCACTGC----TGAGA  1032

seq1  GACCAGGGTACAGACTGCCAGGATCCAGCACTGAGTGGTCTCTGAATCCT  1099
      || ||  |||   ||||| | ||||||||||||| | ||||| |||||||
seq2  GAACA-TGTAAGAACTGCTA-GATCCAGCACTGA-TTGTCTC-GAATCCT  1078

seq1  TTTATGTCCCTGGAGC  1115
      |||||||  |||||||
seq2  TTTATGT--CTGGAGC  1092

seq1: chr19_41943879_41945005
seq2: B6Ng01-028J08.g_65_1188 (reverse)

seq1  AGACAGCATGTGTAGGGGCTGAGAATGAAGCTCAGTGGAGCACTGTCCTA  50
      |||| ||||||    |||||||| |||||| ||||||||||||| |||||
seq2  AGACCGCATGT---TGGGCTGAG-ATGAAGTTCAGTGGAGCACT-TCCTA  45

seq1  GCATGTACCAAGTGCTGGGTTTAGTCCCCAGCACTGCAGGAAAATAAACC  100
      ||| || |||||||||||||||||| |||| | |||||||||||| | ||
seq2  GCAAGT-CCAAGTGCTGGGTTTAGT-CCCAACCCTGCAGGAAAAT-ACCC  92

seq1  AGCCAATGA-CTAAAGATGTACAGAAGAA-TAGCAACTGGCATG-TGGGC  147
      ||||||||| ||||||||||||||||||| |||| ||||||||| || ||
seq2  AGCCAATGACCTAAAGATGTACAGAAGAATTAGC-ACTGGCATGTTGAGC  141

seq1  GTTC-TGTGCGGGATGAGGGCCAGTGGCTAGGGAACCCTAGAGACAACAG  196
      |||| ||| || |||||||| |||||||||| ||||||||||||||||||
seq2  GTTCTTGTCCGAGATGAGGGGCAGTGGCTAGAGAACCCTAGAGACAACAG  191

seq1  AAAGGAATAGTGTGGGATCGTAAGGAGCAG-AGGGGGCTCCCCAGCCACA  245
      |||| ||||||||||||||||||||||||| || ||||||||||||||||
seq2  AAAGAAATAGTGTGGGATCGTAAGGAGCAGAAGAGGGCTCCCCAGCCACA  241

seq1  G-GAACTGCGGGCATCAAGTCCGCAGGAAGGGTGGGAGGGAAGTGGAGAA  294
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGCGGGCATCAAGTCCGCAGGAAGGGTGGGAGGGAAGTGGAGAA  291

seq1  GAGACAGTCTAAAGAACAGCACAAGCCACCTTTATATTAAGCACATACAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTCTAAAGAACAGCACAAGCCACCTTTATATTAAGCACATACAC  341

seq1  GGGAGCCAGCAGACAAGCAGCAGGCAAGTGAGGGGCAAAAGAGTCTGTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAGCAGACAAGCAGCAGGCAAGTGAGGGGCAAAAGAGTCTGTGT  391

seq1  GAGGAAGTCAGGTGAATCAAAGGCACACAGCTCAGCAGCAAAAGCCGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTCAGGTGAATCAAAGGCACACAGCTCAGCAGCAAAAGCCGAGA  441

seq1  AGCCAGAAGGCAGGTGCTCGCCCCACAGTCCTACGAATAGAATGCACTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGGCAGGTGCTCGCCCCACAGTCCTACGAATAGAATGCACTCC  491

seq1  AGGCAATGCTCCGTTACTGAGTGGACACTGGGCTTGGGAAGGCTGGCACT  544
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGCAATGCTCCGTTACTGAGTGGACACTGGGCTTGAGAAGGCTGGCACT  541

seq1  CTCTTAGAAGGCATGGCTCTGCCTGTCACTAAATCAGCTTACGGTTCAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAAGGCATGGCTCTGCCTGTCACTAAATCAGCTTACGGTTCAGC  591

seq1  TGGTTTCCATTAAAAACCAAACCATACCGAACTGAACAACAGAAAAGGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCATTAAAAACCAAACCATACCGAACTGAACAACAGAAAAGGAA  641

seq1  TAAGGAAAAAGAAGCAGAAGAGATGCTCACACCATGCACAGTGAGGGGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAAAGAAGCAGAAGAGATGCTCACACCATGCACAGTGAGGGGGT  691

seq1  TTCCTCAAGTTTTGTTTAAATCGTTGTATATATACTGCATTAAAAAAAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGTTTTGTTTAAATCGTTGTATATATACTGCATTAAAAAAAAG  741

seq1  TCAAAGGGCTGAGATCTGATGCCCTCTTCTGGGGAGTCTGAAGACAGCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGCTGAGATCTGATGCCCTCTTCTGGGGAGTCTGAAGACAGCTA  791

seq1  CAGTGTACTTACATATAATAAATACATTAAAGGGGGGGGGGCTGGTGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTTACATATAATAAATACATTAAAGGGGGGGGGGCTGGTGAGA  841

seq1  TGGCTCAGCAGGTAAGAGCACCCGACTGCTCTTCCAAAGGCCCTGAGTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCAGGTAAGAGCACCCGACTGCTCTTCCAAAGGCCCTGAGTTC  891

seq1  AAGTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGA  941

seq1  CACCCTCTTCTGCTGTATCTGAAGACAGCTACAGTGTACCTACATATAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTTCTGCTGTATCTGAAGACAGCTACAGTGTACCTACATATAAT  991

seq1  AAATAAATCTTTTAAAAAAATTTAAAAAAAAAAGTCAAGCTGGGCAGTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTTTAAAAAAATTTAAAAAAAAAAGTCAAGCTGGGCAGTGG  1041

seq1  TGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATCT  1091

seq1  CTGAGTTCAAGGCCAGCCTGCTCTATAGAATTC  1127
      |||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGCCAGCCTGCTCTATAGAATTC  1124