BAC Information

Click to search

BAC

Clone NameB6Ng01-031G01
Chromosome19 (Build37)
Map Location 4,095,266 - 4,241,761
singlet/doubletdoublet
Overlap geneCdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2
Downstream geneSsh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031G01.bB6Ng01-031G01.g
ACCDH861009DH861010
length477179
definitionDH861009|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G01, 5' end.DH861010|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,241,285 - 4,241,761)(4,095,266 - 4,095,444)
sequence
gaattcactgagtagatcaggctgcttttaaactcacggaaagccacatg
cctctgcctcctgactgctgggattaaaggcacgggcactgtactcagat
ttactcccaatttctaaggcacaaattatcttcctgtcaaaggcaactaa
tattataaatgtatcttctaattacatgtattcatttttagtggcagtgg
ggcactgccatggtgcatgtgtggaggccggaaacagtttgtgacatcgg
ttctctcctttggctgtggatgaggagacaaatcaggtttggtggcaact
gtctttaccactgagccatcttggtggcaactgtttctaccactgagcca
ccttgttggcaactgtctttaccaccaagccatcttggcagccctaatgg
caaacagttcttggatgcctttttagaggtactgtatcataaggcaaatt
gtgtgtgggggcaggggaggggggctg
taaaaaggcatgattaaatgccaggttttgttttttttgtttgtttgttt
gtttttttgtttttaatttgagatttgtttgggttttttttaaagattta
tttactttatatatcttgagaacactgtagctgtcctcagacacaccaga
agagggcactggatcccactacagatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4241285_4241761
seq2: B6Ng01-031G01.b_40_516 (reverse)

seq1  CAGCCCCCCTCCCCTGCCCCCACACACAATTTGCCTTATGATACAGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCCTCCCCTGCCCCCACACACAATTTGCCTTATGATACAGTACC  50

seq1  TCTAAAAAGGCATCCAAGAACTGTTTGCCATTAGGGCTGCCAAGATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGGCATCCAAGAACTGTTTGCCATTAGGGCTGCCAAGATGGCT  100

seq1  TGGTGGTAAAGACAGTTGCCAACAAGGTGGCTCAGTGGTAGAAACAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAAAGACAGTTGCCAACAAGGTGGCTCAGTGGTAGAAACAGTTG  150

seq1  CCACCAAGATGGCTCAGTGGTAAAGACAGTTGCCACCAAACCTGATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGATGGCTCAGTGGTAAAGACAGTTGCCACCAAACCTGATTTGT  200

seq1  CTCCTCATCCACAGCCAAAGGAGAGAACCGATGTCACAAACTGTTTCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATCCACAGCCAAAGGAGAGAACCGATGTCACAAACTGTTTCCGG  250

seq1  CCTCCACACATGCACCATGGCAGTGCCCCACTGCCACTAAAAATGAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACACATGCACCATGGCAGTGCCCCACTGCCACTAAAAATGAATAC  300

seq1  ATGTAATTAGAAGATACATTTATAATATTAGTTGCCTTTGACAGGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTAGAAGATACATTTATAATATTAGTTGCCTTTGACAGGAAGAT  350

seq1  AATTTGTGCCTTAGAAATTGGGAGTAAATCTGAGTACAGTGCCCGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGCCTTAGAAATTGGGAGTAAATCTGAGTACAGTGCCCGTGCCT  400

seq1  TTAATCCCAGCAGTCAGGAGGCAGAGGCATGTGGCTTTCCGTGAGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCAGTCAGGAGGCAGAGGCATGTGGCTTTCCGTGAGTTTAA  450

seq1  AAGCAGCCTGATCTACTCAGTGAATTC  477
      |||||||||||||||||||||||||||
seq2  AAGCAGCCTGATCTACTCAGTGAATTC  477

seq1: chr19_4095266_4095444
seq2: B6Ng01-031G01.g_70_248

seq1  TAAAAAGGCATGATTAAATGCCAGGTTTTGTTTTTTTTGTTTGTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGCATGATTAAATGCCAGGTTTTGTTTTTTTTGTTTGTTTGTTT  50

seq1  GTTTTTTTGTTTTTAATTTGAGATTTGTTTGGGTTTTTTTTAAAGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTGTTTTTAATTTGAGATTTGTTTGGGTTTTTTTTAAAGATTTA  100

seq1  TTTACTTTATATATCTTGAGAACACTGTAGCTGTCCTCAGACACACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTATATATCTTGAGAACACTGTAGCTGTCCTCAGACACACCAGA  150

seq1  AGAGGGCACTGGATCCCACTACAGATGGT  179
      |||||||||||||||||||||||||||||
seq2  AGAGGGCACTGGATCCCACTACAGATGGT  179