BAC Information

Click to search

BAC

Clone NameB6Ng01-031M06
Chromosome19 (Build37)
Map Location 50,723,899 - 50,802,414
singlet/doubletdoublet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream geneLOC100042924, LOC100042928
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M06.bB6Ng01-031M06.g
ACCDH861289DH861290
length1,127243
definitionDH861289|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M06, 5' end.DH861290|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,723,899 - 50,725,042)(50,802,172 - 50,802,414)
sequence
gaattctccttcctacactcctgccactactgatattgttactgttgata
ataggatgcaaaggctgaagggttttactggcaaaagccctgacatactc
tcagtgtcataggcagaaggtttagcaaaacaaaaggaaaacctcacatg
tgtaaaacaaattctcatgccacacacacaggggcactcaatggctccag
ctacccaggaactaccagtttacacagtgttatctagggaacaattatat
gccggaaatatttgccacacaagaaagacaaaataacagagaaaatgaca
tacattaaacatcccctgaaaggtggagggctcagcaggtaggaggccca
gcattcctgacaacccctgctgcatttatgtctgcttttcaagactgtta
aaattacatggcctttcacagatgatcccaggtgattcttagaatcagaa
ggcagaagatagattagggaagctactaaaagcaaagtggaaggaaaata
cagacattatatatggttgttatagcaaccaaatgcatgtccagatctct
gtctcattctttcccaatcctccctatattcctgtttttaaattaataac
ctctggtaatccttttaagttattcatcaagatgaaagaaaatggtgact
cttccttattagtgaaaactgcactcacaagggaagtatattttctaaat
gggcaaaaaaataaaaaagatgactggaaatcaaaaggacatcaagcaat
catgtatgcaaaagtaatgggagtattttcattaaagattcttcacagta
gaagaattgtcaaatgcatgccagagtgacggagatcgagacagacagac
atagacagacaaacagacacatgcagtcacagagagacttgggggagaag
tcagataagtctatagcctcttttacacacgtgtgtgttgaatctttaaa
atacagtggggatgacagaatggtagaaagacagtagatcttattttcga
gcaagttggtatctatacagctgtgacaaaacagtatcacattgcatagc
atctagtgtataaagcagttcagttgctagacaaacttgggcagtagtct
ctgcatgtcaacaaaatgcacctctca
atgcagcgtctagatgttgctcatctctggatccgtgcctgcaggtgagc
ggctcccaaagcccaatgcaaaccttcggaaaacagatacaaagtgagcc
gtgatgaagcaaaacacagagaagcttggaaagggttcagagcatcaatc
atttgcctctgaagaagctggattggcttcagttaagtctaccattgcca
tggtgaaaacggacttgattcccgagggggtgggggggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_50723899_50725042
seq2: B6Ng01-031M06.b_44_1170

seq1  GAATTCTCCTTCCTACACTCCTGCCACTACTGATATTGTTACTGTTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCCTACACTCCTGCCACTACTGATATTGTTACTGTTGATA  50

seq1  ATAGGATGCAAAGGCTGAAGGGTTTTACTGGCAAAAGCCCTGACATACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGCAAAGGCTGAAGGGTTTTACTGGCAAAAGCCCTGACATACTC  100

seq1  TCAGTGTCATAGGCAGAAGGTTTAGCAAAACAAAAGGAAAACCTCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCATAGGCAGAAGGTTTAGCAAAACAAAAGGAAAACCTCACATG  150

seq1  TGTAAAACAAATTCTCATGCCACACACACAGGGGCACTCAATGGCTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACAAATTCTCATGCCACACACACAGGGGCACTCAATGGCTCCAG  200

seq1  CTACCCAGGAACTACCAGTTTACACAGTGTTATCTAGGGAACAATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGGAACTACCAGTTTACACAGTGTTATCTAGGGAACAATTATAT  250

seq1  GCCGGAAATATTTGCCACACAAGAAAGACAAAATAACAGAGAAAATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAAATATTTGCCACACAAGAAAGACAAAATAACAGAGAAAATGACA  300

seq1  TACATTAAACATCCCCTGAAAGGTGGAGGGCTCAGCAGGTAGGAGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAACATCCCCTGAAAGGTGGAGGGCTCAGCAGGTAGGAGGCCCA  350

seq1  GCATTCCTGACAACCCCTGCTGCATTTATGTCTGCTTTTCAAGACTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTGACAACCCCTGCTGCATTTATGTCTGCTTTTCAAGACTGTTA  400

seq1  AAATTACATGGCCTTTCACAGATGATCCCAGGTGATTCTTAGAATCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACATGGCCTTTCACAGATGATCCCAGGTGATTCTTAGAATCAGAA  450

seq1  GGCAGAAGATAGATTAGGGAAGCTACTAAAAGCAAAGTGGAAGGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGATAGATTAGGGAAGCTACTAAAAGCAAAGTGGAAGGAAAATA  500

seq1  CAGACATTATATATGGTTGTTATAGCAACCAAATGCATGTCCAGATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTATATATGGTTGTTATAGCAACCAAATGCATGTCCAGATCTCT  550

seq1  GTCTCATTCTTTCCCAATCCTCCCTATATTCCTGTTTTTAAATTAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTCTTTCCCAATCCTCCCTATATTCCTGTTTTTAAATTAATAAC  600

seq1  CTCTGGTAATCCTTTTAAGTTATTCATCAAGATGAAAGAAAATGGTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAATCCTTTTAAGTTATTCATCAAGATGAAAGAAAATGGTGACT  650

seq1  CTTCCTTATTAGTGAAAACTGCACTCACAAGGGAAGTATATTTTCTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTATTAGTGAAAACTGCACTCACAAGGGAAGTATATTTTCTAAAT  700

seq1  GGGCAAAAAAATAAAAAAGATGACTGGAAATCAAAAGGACATCAAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAAAAATAAAAAAGATGACTGGAAATCAAAAGGACATCAAGCAAT  750

seq1  CATGTATGCAAAAGTAATGGGAGTATTTTCATTAAAGATTCTTCACAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGCAAAAGTAATGGGAGTATTTTCATTAAAGATTCTTCACAGTA  800

seq1  GAAGAATTGTCAAATGCATGCCAGAGTGACGGAGATCGAGACAGACAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTGTCAAATGCATGCCAGAGTGACGGAGATCGAGACAGACAGAC  850

seq1  ATAGACAGACAAACAGACACATGCAGTCACAGAGAGACTTGGGGGAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGACAAACAGACACATGCAGTCACAGAGAGACTTGGGGGAGAAG  900

seq1  TCAGATAAGTCTATAGCCTCTTTTACACACGTGTTGTGTTGAAATCTTTA  950
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TCAGATAAGTCTATAGCCTCTTTTACACACGTG-TGTGTTG-AATCTTTA  948

seq1  AAATACAGTGGGGATGACAGAATGGTAGAAAGACAGTAGATCCTTATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATACAGTGGGGATGACAGAATGGTAGAAAGACAGTAGAT-CTTATTTT  997

seq1  CCGAGGCAAGTTGGTATTCTATACAGCCTGTGACAAAAACCAAGTATCAC  1050
       ||| ||||||||||| ||||||||| |||||||||||    ||||||||
seq2  -CGA-GCAAGTTGGTA-TCTATACAG-CTGTGACAAAA---CAGTATCAC  1040

seq1  ATTGCATAGCATCTAAGTGTAT-AAGCAGTTCAGTTTGCTAGACAAACTT  1099
      |||||||||||||| ||||||| ||||||||||| |||||||||||||||
seq2  ATTGCATAGCATCT-AGTGTATAAAGCAGTTCAG-TTGCTAGACAAACTT  1088

seq1  GGGGCAGTAGTCTCTGGCATTGGTTCATACAAAATGCACTTCTCA  1144
       |||||||||||||| ||||    ||| ||||||||||| |||||
seq2  -GGGCAGTAGTCTCT-GCAT---GTCA-ACAAAATGCACCTCTCA  1127

seq1: chr19_50802172_50802414
seq2: B6Ng01-031M06.g_71_313 (reverse)

seq1  CCTCCCCCCCCCACCCCCTCGGGAATCAAGTCCGTTTTCACCATGGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCCCCACCCCCTCGGGAATCAAGTCCGTTTTCACCATGGCAAT  50

seq1  GGTAGACTTAACTGAAGCCAATCCAGCTTCTTCAGAGGCAAATGATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTTAACTGAAGCCAATCCAGCTTCTTCAGAGGCAAATGATTGAT  100

seq1  GCTCTGAACCCTTTCCAAGCTTCTCTGTGTTTTGCTTCATCACGGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAACCCTTTCCAAGCTTCTCTGTGTTTTGCTTCATCACGGCTCAC  150

seq1  TTTGTATCTGTTTTCCGAAGGTTTGCATTGGGCTTTGGGAGCCGCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCTGTTTTCCGAAGGTTTGCATTGGGCTTTGGGAGCCGCTCACC  200

seq1  TGCAGGCACGGATCCAGAGATGAGCAACATCTAGACGCTGCAT  243
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCACGGATCCAGAGATGAGCAACATCTAGACGCTGCAT  243