BAC Information

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BAC

Clone NameB6Ng01-032C01
Chromosome19 (Build37)
Map Location 54,736,035 - 54,913,337
singlet/doubletdoublet
Overlap geneLOC100043004
Upstream geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032C01.bB6Ng01-032C01.g
ACCDH861553DH861554
length863408
definitionDH861553|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C01, 5' end.DH861554|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,912,476 - 54,913,337)(54,736,035 - 54,736,448)
sequence
gaattcctgatgccagaagccttttatgcacaaagaagaaacttagcaaa
aacagtctagaagccagatctccaggacacaatacagttcctgtacaatc
caattttgcaaggaattaaaagtttgggaacttatttgtttcattaaaag
tattagaacaagaattaattaacaaggaaattattaaaacaatgcataaa
acatatcctgctggttcctggaatttgacagtcttaatttttcttttctt
cgctctgtatatctataaatagcttccaaaagttaaccagtgtgctgtaa
ttaatttgtttgaaggaactggctgtaattataactgtggaaagtgtgtg
atggctgaaaactgtcatgctggaagatgttggtgttgatgacttagtga
agcccagtattggccaactgtggcactgacggctcagcatgttgttggct
ctgtcatgaatgcaatcggtataagctgttatggaaaagatataaaccaa
gagttagaaatgccttgcagtgcctggtgccttgtggatacagcacatct
attggataaaggctgagttaatgaatctgtaacccattcaaatatgaagc
aaaagttggagagggaagaaaaatggttcaagttcatttcttctgtcacg
gcaggttcaaggccaaaggctaatgcttgtgttttagttaggatctcact
atgtggtccaggctgggctgctactcatggagatcctcctgggttaccct
tctgcatgctgtgatgtattcattgcaggcatgagttactagccctggct
aagactctttcatttttgaatagcaaatgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtggg
caacagtgaactaagactctggcactctggagcttaaagatcattagaga
gacaagaaatagaatatctaaatcatttaaatgttaaataaacgacaaac
caaatgctctgggaaaggcaaagagaaagatccaggctcgggcacatagg
actggggtaggctgctgtggctgttagtttagggagaattggacccaact
ggcaccgatgtaattaatatcatctcagagataatagttctgagatgaaa
ttgcaaatggttaatgctgttttgtatgaaaagtggatgggaatgataat
ttaagaataatcattttaattgatgtttatgtaccagagagatggtgagc
tcatggtgggaagagagggtgtaccagagagatagtgagctcatggtggg
aagagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_54912476_54913337
seq2: B6Ng01-032C01.b_43_905 (reverse)

seq1  CACACACACACACACACACACACACACACACACACATTTGCTATTC-AAA  49
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCACACACACACACACACACACACACACACACACATTTGCTATTCAAAA  50

seq1  ATGAAAGAGTCTTAGCCAGGGCTAGTAACTCATGCCTGCAATGAATACAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGTCTTAGCCAGGGCTAGTAACTCATGCCTGCAATGAATACAT  100

seq1  CACAGCATGCAGAAGGGTAACCCAGGAGGATCTCCATGAGTAGCAGCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGCAGAAGGGTAACCCAGGAGGATCTCCATGAGTAGCAGCCCA  150

seq1  GCCTGGACCACATAGTGAGATCCTAACTAAAACACAAGCATTAGCCTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGACCACATAGTGAGATCCTAACTAAAACACAAGCATTAGCCTTTG  200

seq1  GCCTTGAACCTGCCGTGACAGAAGAAATGAACTTGAACCATTTTTCTTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACCTGCCGTGACAGAAGAAATGAACTTGAACCATTTTTCTTCC  250

seq1  CTCTCCAACTTTTGCTTCATATTTGAATGGGTTACAGATTCATTAACTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAACTTTTGCTTCATATTTGAATGGGTTACAGATTCATTAACTCA  300

seq1  GCCTTTATCCAATAGATGTGCTGTATCCACAAGGCACCAGGCACTGCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATCCAATAGATGTGCTGTATCCACAAGGCACCAGGCACTGCAAG  350

seq1  GCATTTCTAACTCTTGGTTTATATCTTTTCCATAACAGCTTATACCGATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTAACTCTTGGTTTATATCTTTTCCATAACAGCTTATACCGATT  400

seq1  GCATTCATGACAGAGCCAACAACATGCTGAGCCGTCAGTGCCACAGTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGACAGAGCCAACAACATGCTGAGCCGTCAGTGCCACAGTTGG  450

seq1  CCAATACTGGGCTTCACTAAGTCATCAACACCAACATCTTCCAGCATGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTGGGCTTCACTAAGTCATCAACACCAACATCTTCCAGCATGAC  500

seq1  AGTTTTCAGCCATCACACACTTTCCACAGTTATAATTACAGCCAGTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAGCCATCACACACTTTCCACAGTTATAATTACAGCCAGTTCCT  550

seq1  TCAAACAAATTAATTACAGCACACTGGTTAACTTTTGGAAGCTATTTATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAATTAATTACAGCACACTGGTTAACTTTTGGAAGCTATTTATA  600

seq1  GATATACAGAGCGAAGAAAAGAAAAATTAAGACTGTCAAATTCCAGGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAGAGCGAAGAAAAGAAAAATTAAGACTGTCAAATTCCAGGAAC  650

seq1  CAGCAGGATATGTTTTATGCATTGTTTTAATAATTTCCTTGTTAATTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGATATGTTTTATGCATTGTTTTAATAATTTCCTTGTTAATTAAT  700

seq1  TCTTGTTCTAATACTTTTAATGAAACAAATAAGTTCCCAAACTTTTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCTAATACTTTTAATGAAACAAATAAGTTCCCAAACTTTTAATT  750

seq1  CCTTGCAAAATTGGATTGTACAGGAACTGTATTGTGTCCTGGAGATCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAAAATTGGATTGTACAGGAACTGTATTGTGTCCTGGAGATCTGG  800

seq1  CTTCTAGACTGTTTTTGCTAAGTTTCTTCTTTGTGCATAAAAGGCTTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGACTGTTTTTGCTAAGTTTCTTCTTTGTGCATAAAAGGCTTCTG  850

seq1  GCATCAGGAATTC  862
      |||||||||||||
seq2  GCATCAGGAATTC  863

seq1: chr19_54736035_54736448
seq2: B6Ng01-032C01.g_63_476

seq1  GAATTCCAACAGTGAACTAAGACTCTGGCACTCTGGAGCTTAAAGATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAGTGAACTAAGACTCTGGCACTCTGGAGCTTAAAGATCAT  50

seq1  TAGAGAGACAAGAAATAGAATATCTAAATCATTTAAATGTTAAATAAACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGACAAGAAATAGAATATCTAAATCATTTAAATGTTAAATAAACG  100

seq1  ACAAACCAAATGCTCTGGGAAAGGCAAAGAGAAAGATCCAGGCTCGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAATGCTCTGGGAAAGGCAAAGAGAAAGATCCAGGCTCGGGCA  150

seq1  CATAGGACTGGGGTAGGCTGCTGTGGCTGTTAGTTTAGGGAGAATTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACTGGGGTAGGCTGCTGTGGCTGTTAGTTTAGGGAGAATTGGAC  200

seq1  CCAACTGGCACCGATGTAATTAATATCATCTCAGAGATAATAGTTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGCACCGATGTAATTAATATCATCTCAGAGATAATAGTTCTGAG  250

seq1  ATGAAATTGCAAATGGTTAATGCTGTTTTGTATGAAAAGTGGATGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTGCAAATGGTTAATGCTGTTTTGTATGAAAAGTGGATGGGAAT  300

seq1  GATAATTTAAGAATAATCATTTTAATTGATGTTTATGTACCAGAGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAAGAATAATCATTTTAATTGATGTTTATGTACCAGAGAGATG  350

seq1  GTGAGCTCATGGTGGGAAGAGAGGGTGTACCAGAGAGATAGTGAGCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCATGGTGGGAAGAGAGGGTGTACCAGAGAGATAGTGAGCTCAT  400

seq1  GGTGGGAAGAGAGG  414
      ||||||||||||||
seq2  GGTGGGAAGAGAGG  414