BAC Information

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BAC

Clone NameB6Ng01-032N20
Chromosome19 (Build37)1 (Build37)
Map Location 27,195,566 - 27,196,682103,766,759 - 103,767,453
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
Downstream geneVldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032N20.bB6Ng01-032N20.g
ACCDH862078DH862079
length1,102158
definitionDH862078|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N20, 5' end.DH862079|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,195,566 - 27,196,682)(103,766,759 - 103,767,453)
sequence
gaattcaacatacagacatggaaatggtcggaggacagtgaatgctaatt
actcccactggatcaagcctcctgtgctggctagtttgcactgtcaactc
aacaagctaaaaatcactcaggaagagggtcacacttgaggaaatatgtg
gagcagattggcttgcagggatatctgtaggggatttttcttaattgtta
attgatatggaaagattaattgataaagaaagattgttagttgacataga
acaatgcaactcactgtgggtgatgacatcatttcctaggcagggtaccc
ctgagtggagcagagagagctagatgagagaaagcaagcaagcaagcagc
atgcatgcattagttctctctgcgtgggatgatgactgtgctataactag
ctgcttaagttcctgtcactgggctggagaaatggctccatggttaacag
cactgtttggtcttccagaggacacaggtttgatttcggcatccatatgg
caccttgcaactatctgtaactaaacttccagagactacaacagtcttct
agcctcctcaggctctggacacccacatggtggacatgtaggcaaaacac
tcatacatataaaataaaacaactcttaactaggtgatgcatacctttga
tcccagcaatcaggagtcagagacaggtgggtctttgagtttgaggccag
cctgatctatagagcaaagttccatgacagtctgggttatacagataaat
cctgtttcaaaaaataaaagttcctgcctctacttccctcagtggtagac
tatgacatgtaaattgtaagcttaataaacctttcctcccttgtgttgct
tttggtcaggatgttacacacacacacacaatcaaatatgcattatgttg
tattgcattttttaaaagatgtataaattcttagatttaggtcacccctc
ttccattcctgccagctcgagtgacagtgcagaggtgttttcctgttaaa
ttgtctttatttcccagactctctgcacttgctgcggtgcagccataaca
gctctcacagagctgcgctctttgctgggctgtagctatcactctcctct
gg
agtcctgccaaggagaaattatcctggaatgcagggtaggcctaaccaca
gcccttataatagaaggcaggaaggggttagagtcctaaaatgttataaa
ctcagaagcagacatcacaataagagtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27195566_27196682
seq2: B6Ng01-032N20.b_45_1146 (reverse)

seq1  CCAGAGGAGAGGTGATGAGCTACAGCCCAGCAGAGAGGCGCAGCTCTGTG  50
      |||||||||| ||||| ||||||||||||||| ||| |||||||||||||
seq2  CCAGAGGAGA-GTGAT-AGCTACAGCCCAGCAAAGA-GCGCAGCTCTGTG  47

seq1  AGGAGCTGTTATGGCTGCCACCGCAGCAGGTGCAGAGGAAGTCTGGGGAA  100
      | ||||||||||||||| |||||||||| ||||||||  ||||| |||||
seq2  A-GAGCTGTTATGGCTG-CACCGCAGCAAGTGCAGAG--AGTCT-GGGAA  92

seq1  TTAAAGACACTCTAACA-GAAAACAACCCTCTGCCACTGTCACTCGAGCT  149
       |||||||| | ||||| |||||||  |||||| ||||||||||||||||
seq2  ATAAAGACAATTTAACAGGAAAACA--CCTCTG-CACTGTCACTCGAGCT  139

seq1  GGCAGGGAATGGAAGAGGGGTGACCTAAATTCTAAGAATTTAATACATTC  199
      |||| |||||||||||||||||||||||| ||||||||||| ||||| ||
seq2  GGCA-GGAATGGAAGAGGGGTGACCTAAA-TCTAAGAATTT-ATACA-TC  185

seq1  TTTTAAAAAATGCCAATTACAACATAATGCATATTTGATTGTGTGTGTGT  249
      |||||||||||||  | |||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATGC--AATACAACATAATGCATATTTGATTGTGTGTGTGT  233

seq1  GTGTAACATCCTGACCAAAAGCAACACAAGGGAGGAAAGGTTTATTAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACATCCTGACCAAAAGCAACACAAGGGAGGAAAGGTTTATTAAGC  283

seq1  TTACAATTTACATGTCATAGTCTACCACTGAGGGAAGTAGAGGCAGGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTTACATGTCATAGTCTACCACTGAGGGAAGTAGAGGCAGGAAC  333

seq1  TTTTATTTTTTGAAACAGGATTTATCTGTATAACCCAGACTGTCATGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTGAAACAGGATTTATCTGTATAACCCAGACTGTCATGGAA  383

seq1  C-TTGCTCTATAGATCAGGCTGGCCTCAAACTCAAAGACCCACCTGTCTC  448
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTATAGATCAGGCTGGCCTCAAACTCAAAGACCCACCTGTCTC  433

seq1  TGACTCCTGATTGCTGGGATCAAAGGTATGCATCACCTAGTTAAGAGTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTGATTGCTGGGATCAAAGGTATGCATCACCTAGTTAAGAGTTG  483

seq1  TTTTATTTTATATGTATGAGTGTTTTGCCTACATGTCCACCATGTGGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATATGTATGAGTGTTTTGCCTACATGTCCACCATGTGGGTG  533

seq1  TCCAGAGCCTGAGGAGGCTAGAAGACTGTTGTAGTCTCTGGAAGTTTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCCTGAGGAGGCTAGAAGACTGTTGTAGTCTCTGGAAGTTTAGT  583

seq1  TACAGATAGTTGCAAGGTGCCATATGGATGCCGAAATCAAACCTGTGTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAGTTGCAAGGTGCCATATGGATGCCGAAATCAAACCTGTGTCC  633

seq1  TCTGGAAGACCAAACAGTGCTGTTAACCATGGAGCCATTTCTCCAGCCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGACCAAACAGTGCTGTTAACCATGGAGCCATTTCTCCAGCCCA  683

seq1  GTGACAGGAACTTAAGCAGCTAGTTATAGCACAGTCATCATCCCACGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGGAACTTAAGCAGCTAGTTATAGCACAGTCATCATCCCACGCAG  733

seq1  AGAGAACTAATGCATGCATGCTGCTTGCTTGCTTGCTTTCTCTCATCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTAATGCATGCATGCTGCTTGCTTGCTTGCTTTCTCTCATCTAG  783

seq1  CTCTCTCTGCTCCACTCAGGGGTACCCTGCCTAGGAAATGATGTCATCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGCTCCACTCAGGGGTACCCTGCCTAGGAAATGATGTCATCAC  833

seq1  CCACAGTGAGTTGCATTGTTCTATGTCAACTAACAATCTTTCTTTATCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGAGTTGCATTGTTCTATGTCAACTAACAATCTTTCTTTATCAA  883

seq1  TTAATCTTTCCATATCAATTAACAATTAAGAAAAATCCCCTACAGATATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTCCATATCAATTAACAATTAAGAAAAATCCCCTACAGATATC  933

seq1  CCTGCAAGCCAATCTGCTCCACATATTTCCTCAAGTGTGACCCTCTTCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGCCAATCTGCTCCACATATTTCCTCAAGTGTGACCCTCTTCCT  983

seq1  GAGTGATTTTTAGCTTGTTGAGTTGACAGTGCAAACTAGCCAGCACAGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTTTTAGCTTGTTGAGTTGACAGTGCAAACTAGCCAGCACAGGA  1033

seq1  GGCTTGATCCAGTGGGAGTAATTAGCATTCACTGTCCTCCGACCATTTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGATCCAGTGGGAGTAATTAGCATTCACTGTCCTCCGACCATTTCC  1083

seq1  ATGTCTGTATGTTGAATTC  1117
      |||||||||||||||||||
seq2  ATGTCTGTATGTTGAATTC  1102

seq1: chr1_103766759_103767453
seq2: B6Ng01-032N20.g_185_231 (reverse)

seq1  CACACACACACACACACACACATACACACATACACACACACACACACACT  50
                      |||||| ||||||| |||||||||||||||||||
seq2  ----------------CACACACACACACACACACACACACACACACACT  34

seq1  CAAACACACACACATGCACACACACAATGAAGGGGCACAGAAGGGACAAT  100
          |  |     |||                                  
seq2  ----CTTATTGTGATGT---------------------------------  47

seq1  ATGCATAGTCGTGATACAAGGAAATGTCTAAACTCATTACTGAGGCAATA  150
                                                        
seq2  --------------------------------------------------  47

seq1  GGTCCTTATTTCACAAACATTTCACACTTGCTCATTGATAGCTTTAAGGC  200
                                                        
seq2  --------------------------------------------------  47

seq1  TGTAAGCTCCAAATGTGCAAACCCACAAGTTGCTCAGAGACTAAAACTGG  250
                                                        
seq2  --------------------------------------------------  47

seq1  CAGACCTCAAACTCCAATTTGTTGTATAATATACCTGAATCCATAATTAG  300
                                                        
seq2  --------------------------------------------------  47

seq1  TTATTTCACAAAAAGTTCATGTGGTATCACAAAAGCAGTAAACACACACA  350
                                                        
seq2  --------------------------------------------------  47

seq1  CACACACACGATGTTATATCATATTATATACCTATATGGATTCCATGAAT  400
                                                        
seq2  --------------------------------------------------  47

seq1  AACCATAAACTCTAAAAATATTAAGTGTAAGGTATGCAAAAATGTTGACA  450
                                                        
seq2  --------------------------------------------------  47

seq1  ATAAGAGATGATTCAGCAGTTGCCTGCACTTGCTGCTCTTTCAGAGAATA  500
                                                        
seq2  --------------------------------------------------  47

seq1  CTGTTTCCACTGCCAGTACCAAAATAGATAAGGCACATCACACCTGTCTG  550
                                                        
seq2  --------------------------------------------------  47

seq1  TAACTTGAATTTGTAAGATCAAACGCCTTCTTCTGGCTTCTGCAGACCCT  600
                                                        
seq2  --------------------------------------------------  47

seq1  CCCCACAAACATGACATATTCTTACACAGATATACACAGAGAAGCATAAA  650
                                                        
seq2  --------------------------------------------------  47

seq1  AAGAAATATGGAAAATTAAAAAGTATGGCCATTTTATTGTGATGT  695
                                                   
seq2  ---------------------------------------------  47