BAC Information

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BAC

Clone NameB6Ng01-033B22
Chromosome19 (Build37)
Map Location 3,919,708 - 3,920,747
singlet/doubletsinglet
Overlap geneAldh3b1
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8
Downstream geneUnc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033B22.bB6Ng01-033B22.g
ACCDH862262DH862263
length3521,037
definitionDH862262|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B22, 5' end.DH862263|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
actttgtaaaccagaatggtcagaaccgcagagatctgcctgcctctttc
ttctgagtgctgggattaaaggtgtgtggcattactgcccagtgattcta
cagggcagtgataatgtaatgggaacaattcctcagttggggttcttttt
cccggagtgtctaggcttgtgttaataaaactaacagttgtatctcctga
gtccataaattagaatttaatcttcagggctacacttccattgtatttgg
aggtggggatttggaaagagttagggtaagaagaggtcatgggggatagg
actctgatgacatgtgtggtgttgtttttgtcagggattatgtgtgtgcc
gg
gaattccatgtccacatacagcagctacctccctaacctcaacctcacta
gtcaaaagtctgcccatgacaagcttctaccgcatcaggccctgacagca
gacacccatggtccccttccgccttcacaggtgagcgagaggctggctca
ggctgctgaagggtagcgctatccaacccagggttgcccagttagccata
ataggatttgcacccaagctcttagggagactagctcccagaggtcacct
gccattgtgctagcttgtcccaggtcctggatgtctgcttcaagggacca
agatgaagcttctagaggatttaaaaggtgaggtgggtagtgagctgcca
ggacctgagctggccggcttctgacttgcctgtgcaagggggagaagtgg
gctttggaattttctctagactttgcctcaagcttaggaaaagcccagct
gagaacagggaaggatgctggagcaaaggcagattggtgttccctatggg
gaagccactggtacagtctcataagtaggcaaggcaggaggcagggagtg
ccatcaaagtcacctccacaccctcaggcctagtggcccttaggtttggg
tccccagggtcaggtgtagaggctaggcaaaacccaaggcctgtttccaa
gccaaggcctaacaaaccagacttcaatcttgatgcaaggtcccatgact
aacctggtcagtttgctcatctgtaaaagctaagactatccaaagccaag
gtctgcccagaaaaataaaaggggggggttttatccagcatacagtcctt
aagaagtgttcatgagccccctcctccctcaggcagggagtcttccgttg
agtacgtctgagactgcaagtcatgtctaaggctgtctgttctggggtct
ggcctgtgtttgaggtgctgggactccaactcaaagcttcagacatgcca
agcaagtgctcttcattgaactcactcctcgcccaaggtggactgctgcc
tctgtttggttttgctttattttttttccaaacaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_3919708_3920747
seq2: B6Ng01-033B22.g_67_1103 (reverse)

seq1  CCTTGTTTGGAAAAAAAAAAAAAGCCAAACCCAAACAAGAGCAGCAGTCC  50
      |||||||||||||||||| |||   |||| |||||||   |||||||| |
seq2  CCTTGTTTGGAAAAAAAATAAA--GCAAAACCAAACAGAGGCAGCAGT-C  47

seq1  CACCTTGGGCGGAGAGCTGAGCTCAGTGCAGAGCACTTGCTTGGCATGTC  100
      |||||||||||  ||| |||| ||| || |||||||||||||||||||||
seq2  CACCTTGGGCGAGGAG-TGAGTTCAATGAAGAGCACTTGCTTGGCATGTC  96

seq1  TGAAGCTTTGAGTTTGAGTCCCAGCACCTCAAACACAGACAAGACCCCAG  150
      |||||||||||||| ||||||||||||||||||||||| | |||||||||
seq2  TGAAGCTTTGAGTTGGAGTCCCAGCACCTCAAACACAGGCCAGACCCCAG  146

seq1  AACAGACAGCCTTAGACATGACCTGCAGTCTCAGACGTACTCAACGG-AG  199
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  AACAGACAGCCTTAGACATGACTTGCAGTCTCAGACGTACTCAACGGAAG  196

seq1  ACTCCCTGCCTGAGGGAGGAGGGGGCTCAATGAACACTTCCTAAGGACTG  249
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  ACTCCCTGCCTGAGGGAGGAGGGGGCTC-ATGAACACTTCTTAAGGACTG  245

seq1  TATGCTGGATAAAA-CCCCCCCTTTTATTTTTCTGGGCAGACCTTGGCTT  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATGCTGGATAAAACCCCCCCCTTTTATTTTTCTGGGCAGACCTTGGCTT  295

seq1  TGGATAGTCTTAGCTTTTACAGATGAGCAAACTGACCAGGTTAGTCATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGTCTTAGCTTTTACAGATGAGCAAACTGACCAGGTTAGTCATGG  345

seq1  GACCTTGCATCAAGATTGAAGTCTGGTTTGTTAGGCCTTGGCTTGGAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGCATCAAGATTGAAGTCTGGTTTGTTAGGCCTTGGCTTGGAAAC  395

seq1  AGGCCTTGGGTTTTGCCTAGCCTCTACACCTGACCCTGGGGACCCAAACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGGGTTTTGCCTAGCCTCTACACCTGACCCTGGGGACCCAAACC  445

seq1  TAAGGGCCACTAGGCCTGAGGGTGTGGAGGTGACTTTGATGGCACTCCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCCACTAGGCCTGAGGGTGTGGAGGTGACTTTGATGGCACTCCCT  495

seq1  GCCTCCTGCCTTGCCTACTTATGAGACTGTACCAGTGGCTTCCCCATAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGCCTTGCCTACTTATGAGACTGTACCAGTGGCTTCCCCATAGG  545

seq1  GAACACCAATCTGCCTTTGCTCCAGCATCCTTCCCTGTTCTCAGCTGGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCAATCTGCCTTTGCTCCAGCATCCTTCCCTGTTCTCAGCTGGGC  595

seq1  TTTTCCTAAGCTTGAGGCAAAGTCTAGAGAAAATTCCAAAGCCCACTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAGCTTGAGGCAAAGTCTAGAGAAAATTCCAAAGCCCACTTCT  645

seq1  CCCCCTTGCACAGGCAAGTCAGAAGCCGGCCAGCTCAGGTCCTGGCAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTGCACAGGCAAGTCAGAAGCCGGCCAGCTCAGGTCCTGGCAGCT  695

seq1  CACTACCCACCTCACCTTTTAAATCCTCTAGAAGCTTCATCTTGGTCCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCCACCTCACCTTTTAAATCCTCTAGAAGCTTCATCTTGGTCCCT  745

seq1  TGAAGCAGACATCCAGGACCTGGGACAAGCTAGCACAATGGCAGGTGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGACATCCAGGACCTGGGACAAGCTAGCACAATGGCAGGTGACC  795

seq1  TCTGGGAGCTAGTCTCCCTAAGAGCTTGGGTGCAAATCCTATTATGGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGCTAGTCTCCCTAAGAGCTTGGGTGCAAATCCTATTATGGCTA  845

seq1  ACTGGGCAACCCTGGGTTGGATAGCGCTACCCTTCAGCAGCCTGAGCCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCAACCCTGGGTTGGATAGCGCTACCCTTCAGCAGCCTGAGCCAG  895

seq1  CCTCTCGCTCACCTGTGAAGGCGGAAGGGGACCATGGGTGTCTGCTGTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCGCTCACCTGTGAAGGCGGAAGGGGACCATGGGTGTCTGCTGTCA  945

seq1  GGGCCTGATGCGGTAGAAGCTTGTCATGGGCAGACTTTTGACTAGTGAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGATGCGGTAGAAGCTTGTCATGGGCAGACTTTTGACTAGTGAGG  995

seq1  TTGAGGTTAGGGAGGTAGCTGCTGTATGTGGACATGGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTAGGGAGGTAGCTGCTGTATGTGGACATGGAATTC  1037