BAC Information

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BAC

Clone NameB6Ng01-033J02
Chromosome1 (Build37)19 (Build37)
Map Location 23,539,187 - 23,540,02749,054,270 - 49,054,836
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033J02.bB6Ng01-033J02.g
ACCDH862580DH862581
length843780
definitionDH862580|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J02, 5' end.DH862581|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,539,187 - 23,540,027)(49,054,270 - 49,054,836)
sequence
gaattcagttttcaccactaagaattcaattctctttcctattccagaca
gggctgctattatttttttcaagacaacattaactgagcaaggaatttgt
caaagaaactctcagtaaaggaaggaggaagcagggaaaaactgattttt
ttctctcttttatattttttttaaaaagccactaaaagattggggtgctt
gatgtattacagaaattatcttattattgtagcaatgaaaagctttcata
cccatccatttattcctgatgtgatttttccctccatgaaaattctttgt
ttttgaaaagtatttgtcaagccgcaggtataattcacactaatcaggga
cacattttaaagggaaggtttgaggtgccccattaagggtgacaatctca
gactcacgcagctacttaacaatctgctccttccccagtgtgtttgcccg
ccacctaaaatgaattgtccttagaaacttgcaatagaaaagtaatttca
ttgtacagcctacagtgagtgtctcttctgtgagactatttgatatatgt
gagggtagatgaatgcttgctgtttgcatgatctatataccctgcaattt
atagaaattgcctaaattttcaggagaaggtgtttgtttgtttgtttgca
tcttgaaaatttgatatattgccttctcatcatttcaaaccaattctgtt
tcatttttcatatgttctcttctgattcatattaatttttaaattatttt
tttgaaattatattattccttgtcttttccctccctccagtccctcccat
attccccttctttgtctcttttaaagtttgtagtctctttttt
gaattctattgtggatttttgcatcgatattcataagggaaattggtctg
aagttctctatctttgttgggtctttctgtggtttaggtatcagagtaat
agtggcttcataaaatgagttgggtagagtaccttctacttctattttgt
gaaatagtttgtgcagaactggaattagatcttctttgaaggtctgatag
aactctgcactaaacccgtctggtcctgggctttttttggctgggagact
attaataaatgcttctatttctttaggtgatatgggactgtttagatggt
caacttgatcctgattcaactttggtacctggtatctgtccagaaatttg
tccatttcgtccaggttttccagttttgttgagtatagccttttattgaa
ggatctgatggtgttatggatttcttcaggatctgttgttatgtctccct
tttcatttcatttcatttaggattttgtccctgtgccctttagtgagtct
agctaagggtttatctatcttgttgattttttcaaagaaccaactcctcg
tttggttaattctttgaatagttcttcttgtttccacttggttgatttca
cccctgagtttgattatttcctgccgtatactcctcttgggtgaatttgc
tttcctttttttctagagctttttagatgtgttgtcaagctgctagtatg
tgctctctcccgtttcttcttggaggcactcagagctatgagtttccctc
ttagaatttctttcattgtgtcccaaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23539187_23540027
seq2: B6Ng01-033J02.b_44_886

seq1  GAATTCAGTTTTCACCACTAAGAATTCAATTCTCTTTCCTATTCCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCACCACTAAGAATTCAATTCTCTTTCCTATTCCAGACA  50

seq1  GGGCTGCTATTATTTTTTTCAAGACAACATTAACTGAGCAAGGAATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTATTATTTTTTTCAAGACAACATTAACTGAGCAAGGAATTTGT  100

seq1  CAAAGAAACTCTCAGTAAAGGAAGGAGGAAGCAGGGAAAAACTGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACTCTCAGTAAAGGAAGGAGGAAGCAGGGAAAAACTGATTTTT  150

seq1  TTCTCTCTTTTATATTTTTTTTAAAAAGCCACTAAAAGATTGGGGTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTTTATATTTTTTTTAAAAAGCCACTAAAAGATTGGGGTGCTT  200

seq1  GATGTATTACAGAAATTATCTTATTATTGTAGCAATGAAAAGCTTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTACAGAAATTATCTTATTATTGTAGCAATGAAAAGCTTTCATA  250

seq1  CCCATCCATTTATTCCTGATGTGATTTTTCCCTCCATGAAAATTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATTTATTCCTGATGTGATTTTTCCCTCCATGAAAATTCTTTGT  300

seq1  TTTTGAAAAGTATTTGTCAAGCCGCAGGTATAATTCACACTAATCAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAGTATTTGTCAAGCCGCAGGTATAATTCACACTAATCAGGGA  350

seq1  CACATTTTAAAGGGAAGGTTTGAGGTGCCCCATTAAGGGTGACAATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTAAAGGGAAGGTTTGAGGTGCCCCATTAAGGGTGACAATCTCA  400

seq1  GACTCACGCAGCTACTTAACAATCTGCTCCTTCCCCAGTGTGTTTGCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACGCAGCTACTTAACAATCTGCTCCTTCCCCAGTGTGTTTGCCCG  450

seq1  CCACCTAAAATGAATTGTCCTTAGAAACTTGCAATAGAAAAGTAATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAAATGAATTGTCCTTAGAAACTTGCAATAGAAAAGTAATTTCA  500

seq1  TTGTACAGCCTACAGTGAGTGTCTCTTCTGTGAGACTATTTGATATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGCCTACAGTGAGTGTCTCTTCTGTGAGACTATTTGATATATGT  550

seq1  GAGGGTAGATGAATGCTTGCTGTTTGCATGATCTATATACCCTGCAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGATGAATGCTTGCTGTTTGCATGATCTATATACCCTGCAATTT  600

seq1  ATAGAAATTGCCTAAATTTTCAGGAGAAGGTGTTTGTTTGTTTGTTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATTGCCTAAATTTTCAGGAGAAGGTGTTTGTTTGTTTGTTTGCA  650

seq1  TCTTGAAAATTTGATATATTGCCTTCTCATCATTTCAAACCAATTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAATTTGATATATTGCCTTCTCATCATTTCAAACCAATTCTGTT  700

seq1  TCATTTTTCATATGTTCTCTTCTGATTCATATTAATTTTTAAATTA-TTT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCATTTTTCATATGTTCTCTTCTGATTCATATTAATTTTTAAATTATTTT  750

seq1  TTTGAAATTATATTATTCCTTGTCTTTTCCCTCCCTCCAGTCCCTCCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTATATTATTCCTTGTCTTTTCCCTCCCTCCAGTCCCTCCCAT  800

seq1  ATTCCCCTTCTTTGTCTC-TTTAAAGTTTGTAGTCTCTTTTTT  841
      |||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTCCCCTTCTTTGTCTCTTTTAAAGTTTGTAGTCTCTTTTTT  843

seq1: chr19_49054270_49054836
seq2: B6Ng01-033J02.g_284_847 (reverse)

seq1  ACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTG  50
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  ACCTTTGGGACACAATGAAAGAAATTCTAAGAGGGAAACTCATAGCTCTG  50

seq1  AGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACAAC  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAAC  100

seq1  ACATCT-AAAAGCTCTAGAAAAAAAGG-AAGCAAATTCACCCAAGAGGAG  148
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  ACATCTAAAAAGCTCTAGAAAAAAAGGAAAGCAAATTCACCCAAGAGGAG  150

seq1  TAGACTGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA  198
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA  200

seq1  CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAA  250

seq1  AAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAG  300

seq1  GGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA  348
      |||||||||||||   ||  ||||  ||||||||||||||||||||||||
seq2  GGACAAAATCCTA---AATGAAAT--GAAATGAAAAGGGAGACATAACAA  345

seq1  CAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTA  398
      ||||||||||||||||||| |||||||||||||||||| | |||||| ||
seq2  CAGATCCTGAAGAAATCCATAACACCATCAGATCCTTCAATAAAAGGCTA  395

seq1  TACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAG  448
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAG  445

seq1  ATACCAGGTACCAAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTC  498
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTC  495

seq1  CCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAA  548
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCATATCACCTAAAGAAATAGAAGCATTTATTAATAGTCTCCCAGCCAAA  545

seq1  AAAAGCCCAGGACCAGACG  567
      |||||||||||||||||||
seq2  AAAAGCCCAGGACCAGACG  564