BAC Information

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BAC

Clone NameB6Ng01-033K20
Chromosome19 (Build37)
Map Location 45,724,425 - 45,724,762
singlet/doubletsinglet
Overlap geneFbxw4
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033K20.bB6Ng01-033K20.g
ACCDH862658DH862659
length681206
definitionDH862658|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K20, 5' end.DH862659|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgaactcactgtcctttcaggtccacatttgctctggctctg
gcaactgactgaaccaaacaattaggctcatacctagaactttggaaatg
gtaatggagttgataacacaccctaacagaaagaggaaggctccactcac
tagtacactttcactagaagcctcgccctgtcagcagtttaggaatttgt
aaagccaatctggacaatatttaaatggtttggaatttctacttcatgtt
taatttttttttttttttttttttttttgagacagggtttctctgtatag
ccctggctgtcctggaactcactttgtagaccaggctggcctcgaactca
gaaatacgcctgcctctgcctcccgagtgctgtgattaaaggcgtgcacc
accacgccaggccccatgtttaatgtttagtaaacatttaataaacattt
aataaacattgtgaaggtctgaaaagatggatcagcagttaagagcattg
acttttcttgcagaagtcctgagttcaattcccaggaatcacatggtgcc
tttggaatccgatgcacacttttggtgtgtgttggaagacagctgcagtg
tactcatataaataaaaaataaataaaacattcaaaaataaagtaaaaca
aagattgtgatgaaattgagcattttaattt
acagggaaatcatcactcagggacttcaggcagaaaactagccagtcagc
ctctggatagacaaggctcaacagttcagagaaccaggccatcgcaaata
gttcacagacctgcaaggaagacatgcagatccctgccccccaccccacc
cctcccccagccccacccaaacatagggagaaaaggcagtgtgggggagg
gggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45724425_45724762
seq2: B6Ng01-033K20.b_186_710

seq1  CTCCACTCACTAGAAGTCTCTCACTAGAAGCCTTGCCCTGCCAGCAGTTT  50
      ||||||||||||| |  || ||||||||||||| |||||| |||||||||
seq2  CTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCAGCAGTTT  50

seq1  AGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGATTTGGAATTTCT  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCT  100

seq1  ACTTCATGCTTAAT------------------------------------  114
      |||||||| |||||                                    
seq2  ACTTCATGTTTAATTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTT  150

seq1  --------------------------------------------------  114
                                                        
seq2  CTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  200

seq1  --------------------------------------------------  114
                                                        
seq2  CTCGAACTCAGAAATACGCCTGCCTCTGCCTCCCGAGTGCTGTGATTAAA  250

seq1  ---------------------------------------------GTTTA  119
                                                    ||||
seq2  GGCGTGCACCACCACGCCAGGCCCCATGTTTAATGTTTAGTAAACATTTA  300

seq1  ATAA------AATAAAACTTGTGAAGGTCTGAAGAGATGGCTCCGCAGTT  163
      ||||      ||||||  ||||||||||||||| |||||| || ||||||
seq2  ATAAACATTTAATAAACATTGTGAAGGTCTGAAAAGATGGATCAGCAGTT  350

seq1  AAGAGCATTGACTTTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGGAACC  213
      ||||||||||||||||||| |||| ||||||||||||||||||||||| |
seq2  AAGAGCATTGACTTTTCTTGCAGAAGTCCTGAGTTCAATTCCCAGGAATC  400

seq1  ACATGGTGACTTTGGAATCCGATGCACACTTTTGGTGTGTGTTGGAAGAC  263
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGCCTTTGGAATCCGATGCACACTTTTGGTGTGTGTTGGAAGAC  450

seq1  AGCTGCAGTGTACTCATATAAATAAAAAATAAATAAAACCTTCAAAAATA  313
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTGCAGTGTACTCATATAAATAAAAAATAAATAAAACATTCAAAAATA  500

seq1  AAATAAAACAAAGCTTGTGAAGAAA  338
      || |||||||||| |||||| ||||
seq2  AAGTAAAACAAAGATTGTGATGAAA  525