BAC Information

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BAC

Clone NameB6Ng01-033P06
Chromosome19 (Build37)
Map Location 17,748,878 - 17,811,565
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033P06.bB6Ng01-033P06.g
ACCDH862854DH862855
length1,090940
definitionDH862854|Mus musculus domesticus DNA, BAC clone: B6Ng01-033P06, 5' end.DH862855|Mus musculus domesticus DNA, BAC clone: B6Ng01-033P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,748,878 - 17,749,973)(17,810,624 - 17,811,565)
sequence
gaattcaacacattctcttagttttgtaaaatccataaatatgtataatg
cgcatgttctgctttcttgggatttacacttatgtgaggaagttaaaccc
agaacaaactggtaaaaatcacaaatatgatttggcttttaaggcagaga
gctcagagtcgggagtcatgatagtccatcccagctggggcttagagagg
ctcctggaaagagagggctttccagtaggggactgaaggccttggggttg
gccaggaaaaagagaatgtgctgatggacaatgaaaatagtggagggtga
atgcatgtatgaccatgcagagaaagatgaggaaggcaagggatgttaga
atcagaacaatgatgatattcagggaacctataacctttatgtaactcaa
agttctattcattagttggatgaaagacgctgcttctggcaatgaacccc
tcttcctacaagttctagcatctttacatttatttaatttaagacaattt
aagatctgtaatttgaaagtgacattctattacaatagattatggagcta
cattttctggagacagtgggcagagactctttcagtgacaccaaattaaa
atggtaagttgcctgattagagagatctggcagtgacagaaagacaatat
tgactctggacagaagttaactaagtaggacaaaggaacatgccagaagg
actgggctgggtgattcaccaataccaaagggaaactgggaatacccact
caaccaccccaccttaggaacttgcttctcacagtgccacttgcacataa
gtaattactctatgttcttgttgtggctcaaacacccaactacactgttc
atggcagaagaaacactaactgatttggtcatagaatagaaaatagctca
tgatactaatgttcagacttctctccagtgacccctcagcccgtgagctt
caaaggtcttctagcttgaagactgtcgtgcctacagccctgcatgtgaa
tttcttcaccccagatgctttgacacatccattctcacgccgtctcaaag
gcttgccgggtgaggggtgctggcccatccacatcttgcc
gaattcttctctccttatttcacctcctctcactcctcccggtctctccc
cacatcccttcccctctggattcactccctttctgtctcttattagaaaa
gaacaggcttcccagagacaacaacaaatcatggaaaataaaatagatga
tgaagaagaagaagtagaagaggaagaggaggagaattcgaagaagaaac
agttatcactgaagttggacatactgcccagcaggaggaaatacaatcct
ctcaggaaacacttctgtctctcttctgggacagggaatagaccctaggg
cctcacatgtgctaggcatgagctcttccatcaatcccagtcttctctgg
aaacatttaaaaatggctttcatgaagcccaggcatcttctccatagcag
tcattctgtatgagtctccagtgtgccaccgtgtttgatggtcgctgtgg
gaccaatggtggtcagaaggcattacagagacgtgtcctgctccaccgtg
tgttggcagtggattgtgggcagtgaaagcatctgctccagtaacctgat
aacctggaggtatacattctgttttgaaggaatgaaattaattcttctag
gcctgtgcacagtagtagcctgtaatcatgttcctcagagtgctacttta
gaagagtgtgtggtaaacttgcctttcatttttttttttaaattgaagga
tgaagtaaaacaggacaagaaacattgccatttgtagagctagtctaaga
aaatgaaagattaaagagctctgtaacgatcagaccagaccattctggag
cgtgaaagggagtgtgcagcagacaaatcattggaactgggcacgcacac
taatgagcgctgagcttgttctgtctcccaggacggaaaactaaaagtta
ctgcagactgttcataaaggcattattttaatgtgtagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17748878_17749973
seq2: B6Ng01-033P06.b_42_1131

seq1  GAATTCAACACATTCTCTTAGTTTTGTAAAATCCATAAATATGTATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACATTCTCTTAGTTTTGTAAAATCCATAAATATGTATAATG  50

seq1  CGCATGTTCTGCTTTCTTGGGATTTACACTTATGTGAGGAAGTTAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGTTCTGCTTTCTTGGGATTTACACTTATGTGAGGAAGTTAAACCC  100

seq1  AGAACAAACTGGTAAAAATCACAAATATGATTTGGCTTTTAAGGCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAACTGGTAAAAATCACAAATATGATTTGGCTTTTAAGGCAGAGA  150

seq1  GCTCAGAGTCGGGAGTCATGATAGTCCATCCCAGCTGGGGCTTAGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGTCGGGAGTCATGATAGTCCATCCCAGCTGGGGCTTAGAGAGG  200

seq1  CTCCTGGAAAGAGAGGGCTTTCCAGTAGGGGACTGAAGGCCTTGGGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAAAGAGAGGGCTTTCCAGTAGGGGACTGAAGGCCTTGGGGTTG  250

seq1  GCCAGGAAAAAGAGAATGTGCTGATGGACAATGAAAATAGTGGAGGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAAAAGAGAATGTGCTGATGGACAATGAAAATAGTGGAGGGTGA  300

seq1  ATGCATGTATGACCATGCAGAGAAAGATGAGGAAGGCAAGGGATGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTATGACCATGCAGAGAAAGATGAGGAAGGCAAGGGATGTTAGA  350

seq1  ATCAGAACAATGATGATATTCAGGGAACCTATAACCTTTATGTAACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACAATGATGATATTCAGGGAACCTATAACCTTTATGTAACTCAA  400

seq1  AGTTCTATTCATTAGTTGGATGAAAGACGCTGCTTCTGGCAATGAACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATTCATTAGTTGGATGAAAGACGCTGCTTCTGGCAATGAACCCC  450

seq1  TCTTCCTACAAGTTCTAGCATCTTTACATTTATTTAATTTAAGACAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTACAAGTTCTAGCATCTTTACATTTATTTAATTTAAGACAATTT  500

seq1  AAGATCTGTAATTTGAAAGTGACATTCTATTACAATAGATTATGGAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGTAATTTGAAAGTGACATTCTATTACAATAGATTATGGAGCTA  550

seq1  CATTTTCTGGAGACAGTGGGCAGAGACTCTTTCAGTGACACCAAATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGGAGACAGTGGGCAGAGACTCTTTCAGTGACACCAAATTAAA  600

seq1  ATGGTAAGTTGCCTGATTAGAGAGATCTGGCAGTGACAGAAAGACAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGTTGCCTGATTAGAGAGATCTGGCAGTGACAGAAAGACAATAT  650

seq1  TGACTCTGGACAGAAGTTAACTAAGTAGGACAAAGGAACATGCCAGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGACAGAAGTTAACTAAGTAGGACAAAGGAACATGCCAGAAGG  700

seq1  ACTGGGCTGGGTGATTCACCAATACCAAAGGGAAACTGGGAATACCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTGGGTGATTCACCAATACCAAAGGGAAACTGGGAATACCCACT  750

seq1  CAACCACCCCACCTTAGGAACTTGCTTCTCACAGTGCCACTTGCACATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCCCACCTTAGGAACTTGCTTCTCACAGTGCCACTTGCACATAA  800

seq1  GTAATTACTCTATGTTCTTGTTGTGGCTCAAACACCCAACTACACTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACTCTATGTTCTTGTTGTGGCTCAAACACCCAACTACACTGTTC  850

seq1  ATGGCAGAAGAAACACTAACTGAATTTGGTCATAGAATAG-AAATAGCTC  899
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ATGGCAGAAGAAACACTAACTG-ATTTGGTCATAGAATAGAAAATAGCTC  899

seq1  ATGATACTAATGTTCAAGACTTCTCTCCAGTGACCCCTCAGCCCGTGAGC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGATACTAATGTTC-AGACTTCTCTCCAGTGACCCCTCAGCCCGTGAGC  948

seq1  TTCAGAGGTCCTCTAGCTTGGAGACTGTCGTGCCTACAAGCCCTGCATGT  999
      |||| ||||| ||||||||| |||||||||||||||| ||||||||||||
seq2  TTCAAAGGTCTTCTAGCTTGAAGACTGTCGTGCCTAC-AGCCCTGCATGT  997

seq1  GAAATTCTTCACCCCAGATGCTTTGAACACCTACCATTCTCACGCCGTTC  1049
      ||| ||||||||||||||||||||| |||| | |||||||||||||| ||
seq2  GAATTTCTTCACCCCAGATGCTTTG-ACACAT-CCATTCTCACGCCG-TC  1044

seq1  TCAAAGGCTTGCCGGGTGAGGGGAGCTGGCCCATCCACAGTCTTGCC  1096
      ||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TCAAAGGCTTGCCGGGTGAGGGGTGCTGGCCCATCCACA-TCTTGCC  1090

seq1: chr19_17810624_17811565
seq2: B6Ng01-033P06.g_69_1008 (reverse)

seq1  TGCTACACATTAAATTAATGCCTTTATTGAACAGTCTGCAGTAACTCTTA  50
      |||||||||||||| ||||||||||| ||||||||||||||||||| |||
seq2  TGCTACACATTAAAATAATGCCTTTA-TGAACAGTCTGCAGTAACTTTTA  49

seq1  GTTTTCCGTCCTGGGAGGACAGAACAAGCTCAGCGCTCATTAGTGTGCGT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTTCCGTCCTGGGA-GACAGAACAAGCTCAGCGCTCATTAGTGTGCGT  98

seq1  GCCCAGTTCAAATGATTTGTCTGCTGCACACTCCCTTTCACGCTCCAGAA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTCCAATGATTTGTCTGCTGCACACTCCCTTTCACGCTCCAGAA  148

seq1  TGGTCTGGTCTGATCGTTACAGAGCTCTTTAATCTTTCATTTTCTTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGTCTGATCGTTACAGAGCTCTTTAATCTTTCATTTTCTTAGAC  198

seq1  TAAGCTCTACAAATGGCAATGTTTCTTGTCCTGTTTTACTTCATCCTTCA  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AGCTCTACAAATGGCAATGTTTCTTGTCCTGTTTTACTTCATCCTTCA  247

seq1  ATTT-AAAAAAAAAATGAAAGGCAAGTTTACCACACACTCTTCTAAAGTA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAAAAAATGAAAGGCAAGTTTACCACACACTCTTCTAAAGTA  297

seq1  GCACTCTGAGGAACATGATTACAGGCTACTACTGTGCACAGGCCTAGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGAGGAACATGATTACAGGCTACTACTGTGCACAGGCCTAGAAG  347

seq1  AATTAATTTCATTCCTTCAAAACAGAATGTATACCTCCAGGTTATCAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTCATTCCTTCAAAACAGAATGTATACCTCCAGGTTATCAGGT  397

seq1  TACTGGAGCAGATGCTTTCACTGCCCACAATCCACTGCCAACACACGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGCAGATGCTTTCACTGCCCACAATCCACTGCCAACACACGGTG  447

seq1  GAGCAGGACACGTCTCTGTAATGCCTTCTGACCACCATTGGTCCCACAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGACACGTCTCTGTAATGCCTTCTGACCACCATTGGTCCCACAGC  497

seq1  GACCATCAAACACGGTGGCACACTGGAGACTCATACAGAATGACTGCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCAAACACGGTGGCACACTGGAGACTCATACAGAATGACTGCTAT  547

seq1  GGAGAAGATGCCTGGGCTTCATGAAAGCCATTTTTAAATGTTTCCAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGATGCCTGGGCTTCATGAAAGCCATTTTTAAATGTTTCCAGAGA  597

seq1  AGACTGGGATTGATGGAAGAGCTCATGCCTAGCACATGTGAGGCCCTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGATTGATGGAAGAGCTCATGCCTAGCACATGTGAGGCCCTAGG  647

seq1  GTCTATTCCCTGTCCCAGAAGAGAGACAGAAGTGTTTCCTGAGAGGATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCCCTGTCCCAGAAGAGAGACAGAAGTGTTTCCTGAGAGGATTG  697

seq1  TATTTCCTCCTGCTGGGCAGTATGTCCAACTTCAGTGATAACTGTTTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTCCTGCTGGGCAGTATGTCCAACTTCAGTGATAACTGTTTCTT  747

seq1  CTTCGAATTCTCCTCCTCTTCCTCTTCTACTTCTTCTTCTTCATCATCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAATTCTCCTCCTCTTCCTCTTCTACTTCTTCTTCTTCATCATCTA  797

seq1  TTTTATTTTCCATGATTTGTTGTTGTCTCTGGGAAGCCTGTTCTTTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCCATGATTTGTTGTTGTCTCTGGGAAGCCTGTTCTTTTCTA  847

seq1  ATAAGAGACAGAAAGGGAGTGAATCCAGAGGGGAAGGGATGTGGGGAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGACAGAAAGGGAGTGAATCCAGAGGGGAAGGGATGTGGGGAGAG  897

seq1  ACCGGGAGGAGTGAGAGGAGGTGAAATAAGGAGAGAAGAATTC  942
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAGGAGTGAGAGGAGGTGAAATAAGGAGAGAAGAATTC  940