BAC Information

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BAC

Clone NameB6Ng01-033P23
Chromosome19 (Build37)
Map Location 37,280,268 - 37,449,540
singlet/doubletdoublet
Overlap geneCpeb3, March5, LOC668230, Ide, LOC100043010
Upstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
Downstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033P23.bB6Ng01-033P23.g
ACCDH862884DH862885
length1,078448
definitionDH862884|Mus musculus domesticus DNA, BAC clone: B6Ng01-033P23, 5' end.DH862885|Mus musculus domesticus DNA, BAC clone: B6Ng01-033P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,280,268 - 37,281,346)(37,449,087 - 37,449,540)
sequence
gaattccagggctgcacggtgagaacgtgtctcaaaataaataaacaaac
ataaaaatgcatatttcagaaattggaggtcgaataaatttatgtatttt
atttatatatcctgaccatggacgcactagtacaaaaatagatttacaca
ggtaagagctgattgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaac
taccttaagcaataattttgaaagcctttcggttctgggtgtggtgggcc
atgcctatataattccagatatggggagctctagataggaggatctccaa
gtccagtcatccctgtgttgcagatacatagtccttgccaaggaaaaact
caaacaaacaaaagtagctttgatggttactgttgtgggatagggtctct
ctctgtaacccgaactgattttgaatttgtgaagaccctcccagatctgc
tggccatgcctatgcagctttttgtttgtccttttgagacagagtcaaac
taattagagttagaggttgaccttgaactcctaatccttctgcctcctcc
tctcctgtgctggggttacgggattggacgcctaccatatccttgattaa
ttgattgattgattatttatttatttatttatttagcctaggctactctg
gaattcattatacagaccaggtaatccttctgtctcagtcttccaagtct
ggaattataggcctgagaaaccactccaggctcaaatttaaagaaacatt
ttcatttaaagaaatagcaaacgttttgtagaagtttaaaaaaaaaaaac
aaaaaaccaaaaaaccgtaggcacaaccaacggaaaactagcaaaacatc
cccaccattcaagcgctaaacaatgccacggtcttccaaattacgcatcg
ggttaagtcaacaacagctcgtttcccccctccaaagctaatccctttcc
gcgtcaaagaagacagatgcttgatttgtcacttctttctctttttgatc
ctcggccgggatccactttgtttaaaaaggtctaaggagctttaggaatg
gttaaccgtgacctctgcggaaaaacaa
aggtcctgtggaagaacaggaagtgctcttaacagctcttatccatctct
ccagcccatgattttttttgttgttgttggtttttttgggtttttttttt
ttttttttttcgagacagggtttctctgtattgccctggctgtcctggaa
ctcactctgtagaccaggctggcctcgaactcaaaaatccacttgcctct
gcctcccgagtgctgcatcccatgatttttgtctttttgtcttttttttt
ttttttttttttttttttaatcttttggaattaaaagcaaaaggtcttac
cattcctgtgttttccgatgggcttgcttggcccctgtgaaagggttatt
catgcaaaccactattctaagggggtgttttccctgttccctgtctcccc
ttgtactacgattgccaaccccccagtggaactctagtccattggcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37280268_37281346
seq2: B6Ng01-033P23.b_44_1121

seq1  GAATTCCAGGGCTGCACGGTGAGAACGTGTCTCAAAATAAATAAACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTGCACGGTGAGAACGTGTCTCAAAATAAATAAACAAAC  50

seq1  ATAAAAATGCATATTTCAGAAATTGGAGGTCGAATAAATTTATGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGCATATTTCAGAAATTGGAGGTCGAATAAATTTATGTATTTT  100

seq1  ATTTATATATCCTGACCATGGACGCACTAGTACAAAAATAGATTTACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATATCCTGACCATGGACGCACTAGTACAAAAATAGATTTACACA  150

seq1  GGTAAGAGCTGATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGCTGATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAC  200

seq1  TACCTTAAGCAATAATTTTGAAAGCCTTTCGGTTCTGGGTGTGGTGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAAGCAATAATTTTGAAAGCCTTTCGGTTCTGGGTGTGGTGGGCC  250

seq1  ATGCCTATATAATTCCAGATATGGGGAGCTCTAGATAGGAGGATCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTATATAATTCCAGATATGGGGAGCTCTAGATAGGAGGATCTCCAA  300

seq1  GTCCAGTCATCCCTGTGTTGCAGATACATAGTCCTTGCCAAGGAAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCATCCCTGTGTTGCAGATACATAGTCCTTGCCAAGGAAAAACT  350

seq1  CAAACAAACAAAAGTAGCTTTGATGGTTACTGTTGTGGGATAGGGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAGTAGCTTTGATGGTTACTGTTGTGGGATAGGGTCTCT  400

seq1  CTCTGTAACCCGAACTGATTTTGAATTTGTGAAGACCCTCCCAGATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAACCCGAACTGATTTTGAATTTGTGAAGACCCTCCCAGATCTGC  450

seq1  TGGCCATGCCTATGCAGCTTTTTGTTTGTCCTTTTGAGACAGAGTCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGCCTATGCAGCTTTTTGTTTGTCCTTTTGAGACAGAGTCAAAC  500

seq1  TAATTAGAGTTAGAGGTTGACCTTGAACTCCTAATCCTTCTGCCTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAGTTAGAGGTTGACCTTGAACTCCTAATCCTTCTGCCTCCTCC  550

seq1  TCTCCTGTGCTGGGGTTACGGGATTGGACGCCTACCATATCCTTGATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTGCTGGGGTTACGGGATTGGACGCCTACCATATCCTTGATTAA  600

seq1  TTGATTGATTGATTATTTATTTATTTATTTATTTAGCCTAGGCTACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGATTGATTATTTATTTATTTATTTATTTAGCCTAGGCTACTCTG  650

seq1  GAATTCATTATACAGACCAGGTAATCCTTCTGTCTCAGTCTTCCAAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATACAGACCAGGTAATCCTTCTGTCTCAGTCTTCCAAGTCT  700

seq1  GGAATTATAGGCCTGAGAAACCACTCCAGGCTCAAATTTAAAGAAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATAGGCCTGAGAAACCACTCCAGGCTCAAATTTAAAGAAACATT  750

seq1  TTCATTTAAAGAAATAGCAAACGTTTTGTAGAAGTTTAAAAAAAAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAAGAAATAGCAAACGTTTTGTAGAAGTTTAAAAAAAAAAAAC  800

seq1  AAAAAACCAAAAAACCGTAGGCACAACCAACGGAAAACTAGCAAAACAT-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAAACCAAAAAACCGTAGGCACAACCAACGGAAAACTAGCAAAACATC  850

seq1  CCCACCAATCACAGCGCTAAACAATGCCACAGGTCGTCCAAATTACGCAT  899
      ||||||| ||| |||||||||||||||||| |||| ||||||||||||||
seq2  CCCACCATTCA-AGCGCTAAACAATGCCAC-GGTCTTCCAAATTACGCAT  898

seq1  CGGTTTAAGTCAACAACAGCTCGTTTCCCCCCTCCAAAGCT-ATCCCTTC  948
      ||| ||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CGGGTTAAGTCAACAACAGCTCGTTTCCCCCCTCCAAAGCTAATCCCTTT  948

seq1  CGGCGTCAGAGAAGACAGAGGCGTGATTTGTCACTTC-TTCCCTTTTTGA  997
      | |||||| |||||||||| || |||||||||||||| ||| ||||||||
seq2  CCGCGTCAAAGAAGACAGATGCTTGATTTGTCACTTCTTTCTCTTTTTGA  998

seq1  TCCCTCGGCCGGGATCCAC-CTGCTTAGAAGTGTC-AAGGAGCCTTAGGA  1045
      | |||||||||||||||||  || ||| ||  ||| ||||||| ||||||
seq2  T-CCTCGGCCGGGATCCACTTTGTTTAAAAAGGTCTAAGGAGCTTTAGGA  1047

seq1  ATGGTTAACGGTGACCAGCTGCGGAAAGAAACAA  1079
      ||||||||| ||||||  ||||||||  ||||||
seq2  ATGGTTAACCGTGACC-TCTGCGGAA--AAACAA  1078

seq1: chr19_37449087_37449540
seq2: B6Ng01-033P23.g_69_522 (reverse)

seq1  GTGCCAATGGACTAGAGTTCCACTGAGGCGCTGGCACTCGTAGTACAAGG  50
      ||||||||||||||||||||||||| || | ||||| |||||||||||||
seq2  GTGCCAATGGACTAGAGTTCCACTGGGGGGTTGGCAATCGTAGTACAAGG  50

seq1  GGAGACAGAGAACAGGGTAAACACCACCTTAGAATAGTGGTCTGCATGAA  100
      |||||||| |||||||| ||||||| ||||||||||||||| ||||||||
seq2  GGAGACAGGGAACAGGGAAAACACCCCCTTAGAATAGTGGTTTGCATGAA  100

seq1  TGACCCTTTCACAGGGGCCAAGCAAGCCCATCGGAAAACACAGGAATGGT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTTCACAGGGGCCAAGCAAGCCCATCGGAAAACACAGGAATGGT  150

seq1  AAGACCTTTTGCATCTAATTCCAAAAGATTAAAAAAAAAAAAAAAAAAAA  200
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  AAGACCTTTTGCTTTTAATTCCAAAAGATTAAAAAAAAAAAAAAAAAAAA  200

seq1  AAAAAAAGACAAAAAGACAAAAATCATGGGATGCAGCACTCGGGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACAAAAAGACAAAAATCATGGGATGCAGCACTCGGGAGGCAG  250

seq1  AGGCAAGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT  300

seq1  CCAGGACAGCCAGGGCAATACAGAGAAACCCTGTCTCGAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAGGGCAATACAGAGAAACCCTGTCTCGAAAAAAAAAAAA  350

seq1  AAAAAAAACCCAAAAAAACCAACAACAACAAAAAAAATCATGGGCTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCAAAAAAACCAACAACAACAAAAAAAATCATGGGCTGGAG  400

seq1  AGATGGATAAGAGCTGTTAAGAGCACTTCCTGTTCTTCCACAGGACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATAAGAGCTGTTAAGAGCACTTCCTGTTCTTCCACAGGACCTGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454