BAC Information

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BAC

Clone NameB6Ng01-034A04
Chromosome19 (Build37)
Map Location 40,371,237 - 40,372,391
singlet/doubletsinglet
Overlap geneSorbs1
Upstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599
Downstream geneA930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A04.bB6Ng01-034A04.g
ACCDH862894DH862895
length2931,129
definitionDH862894|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A04, 5' end.DH862895|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
acagagactatggcagcatgcacaagaccttcacagtctaagccagatgt
gttcatagtgccaagaggaaaagtgaatgcaaaccccaaccctaacccag
aagctatctcaaattaataaccactcatgtggttaaaaaaaaaatagtgt
tttcctacaggatctcactaggaaaataaatgccacttagggcaagcctt
ataccaagcagaagacggctaacagaaaaaagaactcaatggaaactggg
agggtttcttttttattttttggtgtggtttggtgtgatgtgg
gaattcactggcattattggaaatggcatttgattggcacatttacaaaa
tgctggtgctaccgtggtgttttaaaatgaattgtgacattggtggtgca
cattagatgccccagaagcatttggtaagaggagaatgaaaacaaagctc
tcccttgctgctgaagctgatgccagtttcacaatgagcctcactgttat
cagagcacagagcagcacagaccagatgtcctaggccaaagagcaagtca
acaaaaccttatctgcagctatccttgggtggagcagaagcagtgagttt
tcgggctgttcggaagagggcccccacacagtgagacaatgggaatgtgc
tatcttagttttaattagtattgctctgaggggttttgatatttttatta
atttgttctctcatattttatccagacaccagttttccctgcctcctctt
ttcccagtccctctccccacccctgggtcacaaaacaggaaaaagtgtca
gaagtagctgctgctccctctattaggagtcccacacaacactgagctgc
acaactacagaatatatgcagagggcctaggttagacctatgcagactcc
ctgactattgtttcggtctcagtgagcccctaagggtttgcttgtggtgt
ccttgacccgtctgggtcttactctgtaagccaggagctcaatgtgcagc
acagagtggccttagactcagtgacgtcttcctacctcagcttcctacat
gctaagaacacaaacatgagccaatacatttaaccgggaatgtacaattt
tctgcctgtgcataatctatcccgtttgtacaattgctttttgttctcta
acattgattgccagatttaataatcctggaactaaataactgcttattat
tcttattatctacctatatatcctattataaaaggggcgtggttacttta
agtagtaaagtggatagaggctagggagaaggctgtagacaataagtttc
ccatggtatggaggaaaaaaaacactagtttaccatacttgatcattcga
agtcccccaacctgtgctaattgattatgcattctctcaatggctaagac
tagtcataaagcttctaacattaattggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40371237_40372391
seq2: B6Ng01-034A04.g_67_1195 (reverse)

seq1  CCCACTTAATGTTGAAAGCATTTTATTGACTAGTGCTCTAG-CATTGAAG  49
      |||| ||||||||  ||||  |||| |||||||| || ||| ||||||  
seq2  CCCAATTAATGTTAGAAGC--TTTA-TGACTAGT-CT-TAGCCATTGAGA  45

seq1  AAATGCATTAAATCAATTAAGGCCAACAGGGGTTGGGGGACTTCTGATGA  99
       |||||||  |||||||||  ||  |||  ||||||||||||||  ||||
seq2  GAATGCAT--AATCAATTA--GC--ACA--GGTTGGGGGACTTCGAATGA  87

seq1  TCAAGTAATGGTTAAACTTAGTTGTTTTTTTTTTCCTCATTACCATGGGA  149
      |||||| |||| |||||    | || ||||||||||||  ||||||||||
seq2  TCAAGT-ATGG-TAAAC----TAGTGTTTTTTTTCCTCCATACCATGGGA  131

seq1  AACCTTTATTGTCTACAGCC-TCTCCCTAGCCTCTATCCACTTTACTACC  198
      |||  ||||||||||||||| |||||||||||||||||||||||||||| 
seq2  AAC--TTATTGTCTACAGCCTTCTCCCTAGCCTCTATCCACTTTACTAC-  178

seq1  TTTAAAGTTAACCACGCCCCTTTTTATAATAGGATAATATAGGTAGATAA  248
       |||||| |||||||||||| |||||||||||||| ||||||||||||||
seq2  -TTAAAG-TAACCACGCCCC-TTTTATAATAGGAT-ATATAGGTAGATAA  224

seq1  TTAAGAATAATAAGCAGTTATTTAGTTCCAGGATTATTAAATTCTGGCAA  298
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  -TAAGAATAATAAGCAGTTATTTAGTTCCAGGATTATTAAA-TCTGGCAA  272

seq1  TCAATGTTAGAGAACAAAAAGCAATTGTACAAACGGGATAGATTATGCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTAGAGAACAAAAAGCAATTGTACAAACGGGATAGATTATGCAC  322

seq1  AGGCAGAAAATTGTACATTCCCGGTTAAATGTATTGGCTCATGTTTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAAATTGTACATTCCCGGTTAAATGTATTGGCTCATGTTTGTGT  372

seq1  TCTTAGCATGTAGGAAGCTGAGGTAGGAAGACGTCACTGAGTCTAAGGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATGTAGGAAGCTGAGGTAGGAAGACGTCACTGAGTCTAAGGCC  422

seq1  ACTCTGTGCTGCACATTGAGCTCCTGGCTTACAGAGTAAGACCCAGACGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGCTGCACATTGAGCTCCTGGCTTACAGAGTAAGACCCAGACGG  472

seq1  GTCAAGGACACCACAAGCAAACCCTTAGGGGCTCACTGAGACCGAAACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGACACCACAAGCAAACCCTTAGGGGCTCACTGAGACCGAAACAA  522

seq1  TAGTCAGGGAGTCTGCATAGGTCTAACCTAGGCCCTCTGCATATATTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGGAGTCTGCATAGGTCTAACCTAGGCCCTCTGCATATATTCTG  572

seq1  TAGTTGTGCAGCTCAGTGTTGTGTGGGACTCCTAATAGAGGGAGCAGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTGCAGCTCAGTGTTGTGTGGGACTCCTAATAGAGGGAGCAGCAG  622

seq1  CTACTTCTGACACTTTTTCCTGTTTTGTGACCCAGGGGTGGGGAGAGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTGACACTTTTTCCTGTTTTGTGACCCAGGGGTGGGGAGAGGGA  672

seq1  CTGGGAAAAGAGGAGGCAGGGAAAACTGGTGTCTGGATAAAATATGAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAAGAGGAGGCAGGGAAAACTGGTGTCTGGATAAAATATGAGAG  722

seq1  AACAAATTAATAAAAATATCAAAACCCCTCAGAGCAATACTAATTAAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTAATAAAAATATCAAAACCCCTCAGAGCAATACTAATTAAAAC  772

seq1  TAAGATAGCACATTCCCATTGTCTCACTGTGTGGGGGCCCTCTTCCGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGCACATTCCCATTGTCTCACTGTGTGGGGGCCCTCTTCCGAAC  822

seq1  AGCCCGAAAACTCACTGCTTCTGCTCCACCCAAGGATAGCTGCAGATAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGAAAACTCACTGCTTCTGCTCCACCCAAGGATAGCTGCAGATAAG  872

seq1  GTTTTGTTGACTTGCTCTTTGGCCTAGGACATCTGGTCTGTGCTGCTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGACTTGCTCTTTGGCCTAGGACATCTGGTCTGTGCTGCTCTG  922

seq1  TGCTCTGATAACAGTGAGGCTCATTGTGAAACTGGCATCAGCTTCAGCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGATAACAGTGAGGCTCATTGTGAAACTGGCATCAGCTTCAGCAG  972

seq1  CAAGGGAGAGCTTTGTTTTCATTCTCCTCTTACCAAATGCTTCTGGGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGAGCTTTGTTTTCATTCTCCTCTTACCAAATGCTTCTGGGGCA  1022

seq1  TCTAATGTGCACCACCAATGTCACAATTCATTTTAAAACACCACGGTAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTGCACCACCAATGTCACAATTCATTTTAAAACACCACGGTAGC  1072

seq1  ACCAGCATTTTGTAAATGTGCCAATCAAATGCCATTTCCAATAATGCCAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATTTTGTAAATGTGCCAATCAAATGCCATTTCCAATAATGCCAG  1122

seq1  TGAATTC  1155
      |||||||
seq2  TGAATTC  1129