BAC Information

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BAC

Clone NameB6Ng01-034B20
Chromosome1 (Build37)19 (Build37)
Map Location 31,682,297 - 31,683,49549,054,380 - 49,054,941
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034B20.bB6Ng01-034B20.g
ACCDH862968DH862969
length1,131900
definitionDH862968|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B20, 5' end.DH862969|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,682,297 - 31,683,495)(49,054,380 - 49,054,941)
sequence
gaattcattgtttttaatagctgattcaagacttttaatacagcagcctt
aatggatcagatgtatcatatcatccctgaaatgacagattatcttgaaa
taaatgagtcaggtaccaatttaaaagtgagtaacaacaactcagaaaaa
ttaaattcatagtaataattattcctgcctcaaggcattctcaaatttaa
agaaataaatgagttcattaaggtggtgtgagtatttattacatattgct
agtatcaaataacacattttaagaatagcaggttgtatttcatctacaga
ccctcatacttatatttagatgctgctgctcaacatagaaatgacaaatt
aaaaatgaagttcaagtccttcaaggtcatggttcaatttcagcacttag
taagtcatgtttatttttaccaacacatatgtcactgtccactactgagc
actaaattaacacgaacaattgatagctgctgttagacacacaccattaa
aatcagaatggatcagaatcattttggtattttgtttgaataaagtgcaa
tccgtggaaccaaatatgaatggagagcagaaatatgtgggcccttccta
gactaaagctatctcagagaatgtagggagattataaattttatgatgac
aaaatgaatagatttgacctttaaattgtacttgatacctaaccaccata
cagtgaggatttagttcatttaatcatttttctttattgaaaatatattc
tctccaggagaaggcttagacaaagtctcagtatataccacagatgtcct
gagctcactttgtagacagctatcttaaactcaaaattgtctgcctgctc
tgctcagatgctgataagatgtgcatcacatgctgattatattacagttt
attacagagatctcagccattctaaaacatatgtaatcataaattccagc
agaagaacaagagattctccaattatgagtaggtctgggaatctttggtt
aggaattctcttggatatggagatttctcctaagagacacgcaaagatgt
cgtctcttcctcaattcctagcacgacagggaagtagtatatatatgcag
tatgctgtttttcttcagacatggccctcat
gaattcctgatctttccaaaacttttatcatgaatgggtgttgaatcttg
tcaaatgctttttctgcatctaacgagacgatcatgtggtttttgtcttt
gtgtttgtttatataatggattacattgatagattttcgtatattgaacc
atccctgcattcctggaataaaacctacttggacaggatggatgattgct
ttaatatgttcttggatttggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgagt
ctttctgtggtttaggtatcagagtaatattggcttcataaaatgagttg
ggtagagtaccttctacttctgttttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcatgaaacccgtctg
gtcctgggctttttttggctgggagaccattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgactcaactt
tggtacctggtatctgttcagaaatttgtccatttcgtccaggttttcca
gtttttgttgagtataaccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgatcttgttaa
ttatgatttgtcccctgtgcccctttagtgagtctagctaagggtttatc
tatcttgttgagttcctcaaagaaccaactccttgtttggttattctttg
aatagtcttcttgtttccatttggttgttccacccctgagtttgattatt
tcctggcatctactcctcttgggttgaattgcttcccttttttctagacc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31682297_31683495
seq2: B6Ng01-034B20.b_43_1173 (reverse)

seq1  ATGAGGGGCAATGTCTATGAAGAAAAACAGCATAAATTTTGCCATATATT  50
      |||| |||| |||||  |||||||||||||||||     || ||||||| 
seq2  ATGA-GGGCCATGTC--TGAAGAAAAACAGCATA----CTG-CATATAT-  41

seq1  ACTAAAACTACATTTCCTGTTTCGGTTGCTTAGAAAATGGGAGTGAAGGA  100
          | ||||| || ||||  |||  ||| ||| || || |   ||| ||
seq2  ----ATACTAC-TTCCCTG--TCG--TGC-TAGGAATTGAG---GAA-GA  77

seq1  GCGAACATTCTTTGC-TGTCTCTTATGGGAGAATACTCCATTATCACAAG  149
      |   ||| ||||||| |||||||||  ||||||  ||||| |||| ||||
seq2  GACGACA-TCTTTGCGTGTCTCTTA--GGAGAAATCTCCA-TATC-CAAG  122

seq1  AGAATTTTCTTTAACCATAAGATATCCACAGACCTACTCACTAATGTGAG  199
      ||||||     |||||| ||||| ||| |||||||||||| ||||  |||
seq2  AGAATT---CCTAACCA-AAGAT-TCC-CAGACCTACTCA-TAATTGGAG  165

seq1  ATATCCTCTTTGTTCTTCTCTGCTTTGTGAATTTATGAATTTACATATGT  249
      | || ||| |||||||  ||||||    ||||||||||  ||||||||| 
seq2  A-AT-CTC-TTGTTCT--TCTGCT---GGAATTTATGA--TTACATATG-  204

seq1  TTTTAGAAATGGGCTGAGATCCTCTTGTAAATATACTGTAATATAATCCA  299
      ||||||||   ||||||||| ||| ||| |||| ||||||||||||||  
seq2  TTTTAGAA--TGGCTGAGAT-CTC-TGT-AATAAACTGTAATATAATC--  247

seq1  GGCATGTTGATGCACATCTTTAATTCCAGCATTCTGGAGGCAGAGGCAGG  349
       ||||| |||||||||||||  ||  ||||| ||||   ||||| |||||
seq2  AGCATG-TGATGCACATCTT--AT--CAGCA-TCTG--AGCAGA-GCAGG  288

seq1  CAGACAATTTTTGAGTTTAAGATAGCCTGTTCTACAAAGTGAGCTCCAGG  399
      ||||||| ||||||||||||||||| ||| ||||||||||||||| ||||
seq2  CAGACAA-TTTTGAGTTTAAGATAG-CTG-TCTACAAAGTGAGCT-CAGG  334

seq1  ACATCCTGTGGTATATACTGAGACTTTGTCTTAAGCCTTCTCCTGGAGAG  449
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAT-CTGTGGTATATACTGAGACTTTGTC-TAAGCCTTCTCCTGGAGAG  382

seq1  AATATATATTCAATAAAAGAAAAATGATTAAATGAACTAAATCCTCACTG  499
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  AATATATTTTCAAT-AAAGAAAAATGATTAAATGAACTAAATCCTCACTG  431

seq1  TATGGTGGTTAGGTATCAAGTACAATTTAAAGGTCAAATCTATTCATTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGTTAGGTATCAAGTACAATTTAAAGGTCAAATCTATTCATTTT  481

seq1  GTCATCATAAAATTTATAATCTCCCTACATTCTCTGAGATAGCTTTAGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATAAAATTTATAATCTCCCTACATTCTCTGAGATAGCTTTAGTC  531

seq1  TAGGAAGGGCCCACATATTTCTGCTCTCCATTCATATTTGGTTCCACGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGCCCACATATTTCTGCTCTCCATTCATATTTGGTTCCACGGA  581

seq1  TTGCACTTTATTCAAACAAAATACCAAAATGATTCTGATCCATTCTGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTTATTCAAACAAAATACCAAAATGATTCTGATCCATTCTGATT  631

seq1  TTAATGGTGTGTGTCTAACAGCAGCTATCAATTGTTCGTGTTAATTTAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTGTGTGTCTAACAGCAGCTATCAATTGTTCGTGTTAATTTAGT  681

seq1  GCTCAGTAGTGGACAGTGACATATGTGTTGGTAAAAATAAACATGACTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTAGTGGACAGTGACATATGTGTTGGTAAAAATAAACATGACTTA  731

seq1  CTAAGTGCTGAAATTGAACCATGACCTTGAAGGACTTGAACTTCATTTTT  849
      ||||||||||||||||||||||||||||||||||||||            
seq2  CTAAGTGCTGAAATTGAACCATGACCTTGAAGGACTTGNNNNNNNNNNNN  781

seq1  AATTTGTCATTTCTATGTTGAGCAGCAGCATCTAAATATAAGTATGAGGG  899
           |||||||||||||||||||||||||||||||||||||||||||||
seq2  NNNNNGTCATTTCTATGTTGAGCAGCAGCATCTAAATATAAGTATGAGGG  831

seq1  TCTGTAGATGAAATACAACCTGCTATTCTTAAAATGTGTTATTTGATACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGATGAAATACAACCTGCTATTCTTAAAATGTGTTATTTGATACT  881

seq1  AGCAATATGTAATAAATACTCACACCACCTTAATGAACTCATTTATTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATGTAATAAATACTCACACCACCTTAATGAACTCATTTATTTCT  931

seq1  TTAAATTTGAGAATGCCTTGAGGCAGGAATAATTATTACTATGAATTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGAGAATGCCTTGAGGCAGGAATAATTATTACTATGAATTTAA  981

seq1  TTTTTCTGAGTTGTTGTTACTCACTTTTAAATTGGTACCTGACTCATTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGTTGTTGTTACTCACTTTTAAATTGGTACCTGACTCATTTA  1031

seq1  TTTCAAGATAATCTGTCATTTCAGGGATGATATGATACATCTGATCCATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATAATCTGTCATTTCAGGGATGATATGATACATCTGATCCATT  1081

seq1  AAGGCTGCTGTATTAAAAGTCTTGAATCAGCTATTAAAAACAATGAATTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCTGTATTAAAAGTCTTGAATCAGCTATTAAAAACAATGAATTC  1131

seq1: chr19_49054380_49054941
seq2: B6Ng01-034B20.g_406_966 (reverse)

seq1  GCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACTGCAGGA  50
      | ||||||||||| |||||||| |  ||||||||||||||||   |||||
seq2  GGTCTAGAAAAAAGGGAAGCAATTCAACCCAAGAGGAGTAGATGCCAGGA  50

seq1  AATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTA  100
      |||||||||||||||||||| || ||||||| ||||||||||||| ||||
seq2  AATAATCAAACTCAGGGGTGGAA-CAACCAAATGGAAACAAGAAG-ACTA  98

seq1  TTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG  150
      ||||||||| ||||||||| |||||||||||||||||| || ||||||||
seq2  TTCAAAGAA-TAACCAAACAAGGAGTTGGTTCTTTGAGGAACTCAACAAG  147

seq1  ATAGATAAACCCTTAGCTAGACTCACTAAA-GGGCACAGGGACAAAATCC  199
      |||||||||||||||||||||||||||||| ||||||||||   ||||| 
seq2  ATAGATAAACCCTTAGCTAGACTCACTAAAGGGGCACAGGGGACAAATCA  197

seq1  TAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAA  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAAGATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAA  247

seq1  GAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATACTCAAC-AA  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATACTCAACAAA  297

seq1  AACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTA  348
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  AACTGGAAAACCTGGACGAAATGGACAAATTTCTGAACAGATACCAGGTA  347

seq1  CCAAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACC  397

seq1  TAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAG  448
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAAGAAATAGAAGCAGTTATTAATGGTCTCCCAGCCAAAAAAAGCCCAG  447

seq1  GACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTA  498
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GACCAGACGGGTTTCATGCAGAGTTCTATCAGACCTTCAAAGAAGATCTA  497

seq1  ATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCT  548
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTCCAGTTCTGCACAAACTATTTCACAAAACAGAAGTAGAAGGTACTCT  547

seq1  ACCCAACTCATTTT  562
      ||||||||||||||
seq2  ACCCAACTCATTTT  561