BAC Information

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BAC

Clone NameB6Ng01-035A19
Chromosome19 (Build37)
Map Location 55,995,602 - 56,176,144
singlet/doubletdoublet
Overlap geneTcf7l2, LOC100043484
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Ppnr
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035A19.bB6Ng01-035A19.g
ACCDH863625DH863626
length8301,001
definitionDH863625|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A19, 5' end.DH863626|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,175,310 - 56,176,144)(55,995,602 - 55,996,645)
sequence
gaattccacagagaatatagaatgttaaaattctccagatggttgagatt
aaggaaaaatatactcgttcctaaaatatgcaaccagtgccttattgtct
gtcttactcagtggaccaactctttcctaaatggagtggtagacactgaa
gtgcccatcttgagttgttgtgaattcactaaaatgaaagggggaaaaga
cttgacatgccagaaagatgtcattcctgtgacggccaaactgacaactc
agacagactccgtgtatggtttgcagtgtggttaggattctgtgtttcta
aaagggactggtgcatgaaggactaactcacgagcccaggttttcgggga
gaaaagaccgcaggagcactgtaataataacagtggccaacctcccagaa
ccttgtgtgcatctgcatggtagcagtgtcatcatttctcatacattttt
ttttttttttgccacaatgaagttttgagttgtgaagcaattaaatgacc
acattctcttctgtgccctgggaatatgcatataaaatagattgtttgga
aataaggtgcatttagtttaaatccttacaaggacaaacggacacctaac
ttggcagattgatctaccctcctgagaataactctgagagatggcaaaga
aaggaactacgtactcactcatcctggtaagttccaccatcttatttcat
acagaatcgatgacagagtgtacatgaagatgagacgatcaacgaagact
tcccaatgactgataatgtctcccatgtcacatgcactcacagcagactt
attcagcacctagctatagaaagcctggta
gaattctctcaaagagacaggcagacttggtggcagtgtcagaagcattc
gagtctgacttgcagggagtcccttagacactgtccaaagccttctgtga
tgtgctctctagacttttcagaaggttcccatggcaatgccctgacttcc
ccttactactgcatgggaaggtagctggctaataggagccactgaggtaa
tgggagggatagtttagaggcaattcggatgcaggactgcgggaacttga
tctcttggctctcaggctcctcctgtctcggcgtctcgtcacacacgtgt
gagagtgtgcgcttgctccttccttctgtgctctagggaagacagtgggg
tcaagaatttcacacctgaagcctctgtgggtttgattctggtgagaacc
ggttgacaggtcctttttcaccaatttgatgatggagcttctgcagatag
ccacggttaccgtgaagcccaggaggttctactgggaaatgtgtcctgag
tcagctcctcctgtctttccagccaagtgtgcctttatgtcaccacctta
aggaagtacattagaatgaaacccaatctgtgtgctcagacttgacctgt
ccttcaggaccctaggagaagctagctgggtaccattgtacagccagttg
accccgcatcacagtagagcattccttcttccttcctgacttaaaggtct
atgtgcccacttgtttctttctttgtcatctctacgcttttcctgttaca
gttaagaggaagtggcctcacttacaactcatgtcctcgtccattaaatc
cccaccccgctcgcctggagttggtcatctgacggcactatgctcgatcg
tgacgagttctcaatcagcgtcactgcatacagagattggtacgatgcct
ggaggagcttgcggcgataaacactcctgctatactgtttcttgatgcgt
ttgcgatcccaggaatgatgcaggccactgaccaccagagcatgtgactt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56175310_56176144
seq2: B6Ng01-035A19.b_43_872 (reverse)

seq1  TACCAGGCATGCTATAGCTAAGGTACTGAAGTAAGTCTGCTGTGAGTGTC  50
      |||||||| | |||||||| |||| ||||| |||||||||||||||||  
seq2  TACCAGGCTTTCTATAGCT-AGGTGCTGAA-TAAGTCTGCTGTGAGTGCA  48

seq1  TCTGAGGCTTGGAGACTTTATCCTTAAATGGGAAGTCCTCGTTGACTGTC  100
      | |||   | |||||| |||||  | | ||||||||| |||||||  |||
seq2  TGTGA-CATGGGAGACATTATCAGTCATTGGGAAGTCTTCGTTGATCGTC  97

seq1  TCATCTTCATCTACACTCTCTCCTCCACTTCTCTCTGAAATAAGATGGTG  150
      |||||||||| |||||||| || || | |||| | |||||||||||||||
seq2  TCATCTTCATGTACACTCTGTCATCGA-TTCTGTATGAAATAAGATGGTG  146

seq1  GAACTTTACCAGGATGAGTGAGTACGTAGTTCCTTTCTTTGCCATCTCTC  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAC-TTACCAGGATGAGTGAGTACGTAGTTCCTTTCTTTGCCATCTCTC  195

seq1  AGAGCTTATTCTCAGGAGGGTAGATCAAACTGCCAAGTTAGGTGTCC-TT  249
      |||| ||||||||||||||||||||||| |||||||||||||||||| ||
seq2  AGAG-TTATTCTCAGGAGGGTAGATCAATCTGCCAAGTTAGGTGTCCGTT  244

seq1  TGTCCTTCTAAGGATTTAAACTAAATGCACCTTATTTCCAAACAATCTAT  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGTAAGGATTTAAACTAAATGCACCTTATTTCCAAACAATCTAT  294

seq1  TTTATATGCATATTCCCAGGGCACAGAAGAGAATGTGGTCATTTAATTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCATATTCCCAGGGCACAGAAGAGAATGTGGTCATTTAATTGC  344

seq1  TTCACAACTCAAAACTTCATTGTGGCAAAAAAAAAAAAAAATGTATGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACTCAAAACTTCATTGTGGCAAAAAAAAAAAAAAATGTATGAGA  394

seq1  AATGATGACACTGCTACCATGCAGATGCACACAAGGTTCTGGGAGGTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGACACTGCTACCATGCAGATGCACACAAGGTTCTGGGAGGTTGG  444

seq1  CCACTGTTATTATTACAGTGCTCCTGCGGTCTTTTCTCCCCGAAAACCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTATTATTACAGTGCTCCTGCGGTCTTTTCTCCCCGAAAACCTG  494

seq1  GGCTCGTGAGTTAGTCCTTCATGCACCAGTCCCTTTTAGAAACACAGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGTGAGTTAGTCCTTCATGCACCAGTCCCTTTTAGAAACACAGAAT  544

seq1  CCTAACCACACTGCAAACCATACACGGAGTCTGTCTGAGTTGTCAGTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCACACTGCAAACCATACACGGAGTCTGTCTGAGTTGTCAGTTTG  594

seq1  GCCGTCACAGGAATGACATCTTTCTGGCATGTCAAGTCTTTTCCCCCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCACAGGAATGACATCTTTCTGGCATGTCAAGTCTTTTCCCCCTTT  644

seq1  CATCTTAGTGAATTCACAACAACTCAAGATGGGCACTTCAGTGTCTACCA  699
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGTGAATTCACAACAACTCAAGATGGGCACTTCAGTGTCTACCA  694

seq1  CTCCATTTAGGAAAGAGTTGGTCCACTGAGTAAGACAGACAATAAGGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTAGGAAAGAGTTGGTCCACTGAGTAAGACAGACAATAAGGCAC  744

seq1  TGGTTGCATATTTTAGGAACGAGTATATTTTTCCTTAATCTCAACCATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCATATTTTAGGAACGAGTATATTTTTCCTTAATCTCAACCATCT  794

seq1  GGAGAATTTTAACATTCTATATTCTCTGTGGAATTC  835
      ||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTTAACATTCTATATTCTCTGTGGAATTC  830

seq1: chr19_55995602_55996645
seq2: B6Ng01-035A19.g_63_1063

seq1  GAATTCTCTCAAAGAGACAGGCAGACTTGGTGGCAGTGTCAGAAGCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAAGAGACAGGCAGACTTGGTGGCAGTGTCAGAAGCATTC  50

seq1  GAGTCTGACTTGCAGGGAGTCCCTTAGACACTGTCCAAAGCCTTCTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGACTTGCAGGGAGTCCCTTAGACACTGTCCAAAGCCTTCTGTGA  100

seq1  TGTGCTCTCTAGACTTTTCAGAAGGTTCCCATGGCAATGCCCTGACTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTCTAGACTTTTCAGAAGGTTCCCATGGCAATGCCCTGACTTCC  150

seq1  CCTTACTACTGCATGGGAAGGTAGCTGGCTAATAGGAGCCACTGAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTACTGCATGGGAAGGTAGCTGGCTAATAGGAGCCACTGAGGTAA  200

seq1  TGGGAGGGATAGTTTAGAGGCAATTCGGATGCAGGACTGCGGGAACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGATAGTTTAGAGGCAATTCGGATGCAGGACTGCGGGAACTTGA  250

seq1  TCTCTTGGCTCTCAGGCTCCTCCTGTCTCGGCGTCTCGTCACACACGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGCTCTCAGGCTCCTCCTGTCTCGGCGTCTCGTCACACACGTGT  300

seq1  GAGAGTGTGCGCTTGCTCCTTCCTTCTGTGCTCTAGGGAAGACAGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGCGCTTGCTCCTTCCTTCTGTGCTCTAGGGAAGACAGTGGGG  350

seq1  TCAAGAATTTCACACCTGAAGCCTCTGTGGGTTTGATTCTGGTGAGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATTTCACACCTGAAGCCTCTGTGGGTTTGATTCTGGTGAGAACC  400

seq1  GGTTGACAGGTCCTTTTTCACCAATTTGATGATGGAGCTTCTGCAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACAGGTCCTTTTTCACCAATTTGATGATGGAGCTTCTGCAGATAG  450

seq1  CCACGGTTACCGTGAAGCCCAGGAGGTTCTACTGGGAAATGTGTCCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTTACCGTGAAGCCCAGGAGGTTCTACTGGGAAATGTGTCCTGAG  500

seq1  TCAGCTCCTCCTGTCTTTCCAGCCAAGTGTGCCTTTATGTCACCACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTCCTGTCTTTCCAGCCAAGTGTGCCTTTATGTCACCACCTTA  550

seq1  AGGAAGTACATTAGAATGAAACCCAATCTGTGTGCTCAGACTTGACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTACATTAGAATGAAACCCAATCTGTGTGCTCAGACTTGACCTGT  600

seq1  CCTTCAGGACCCTAGGAGAAGCTAGCTGGGTACCATTGTAACAGCCAGTT  650
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTCAGGACCCTAGGAGAAGCTAGCTGGGTACCATTGT-ACAGCCAGTT  649

seq1  GACCCCGCATCACAGTAGAGCATTCCTTCTTCCTTCCTGACTTAAAGGTT  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACCCCGCATCACAGTAGAGCATTCCTTCTTCCTTCCTGACTTAAAGG-T  698

seq1  CTATGTGCCCACTTGTTTTCTTTCTTTTGTTCATCTCTTACGCTTTTTCT  750
      ||||||||||||||| |||||||||||   ||||||| ||||| ||||| 
seq2  CTATGTGCCCACTTG-TTTCTTTCTTT--GTCATCTC-TACGC-TTTTCC  743

seq1  TGTTACAGTTAAAGAGGAAGTGGCCTCCACTTACATACTCATGTCCTCGT  800
      |||||||||| ||||||||||||||| |||||||| ||||||||||||||
seq2  TGTTACAGTT-AAGAGGAAGTGGCCT-CACTTACA-ACTCATGTCCTCGT  790

seq1  CCCATTAAAACCCCATCCCGGTCCACTTGGAGTTGGTAATCTGCACAGCA  850
       |||||||| ||||| |||| | | | |||||||||| ||||| || |||
seq2  -CCATTAAATCCCCACCCCGCT-CGCCTGGAGTTGGTCATCTG-ACGGCA  837

seq1  CTTTGCTCAACCGTGGACATGTTCTCATTCCAGGTGTCACGGCATAGCAG  900
      || ||||| | ||| |||  ||||||| ||   | ||||| ||||| |||
seq2  CTATGCTCGATCGT-GACGAGTTCTCAATC--AGCGTCACTGCATA-CAG  883

seq1  AGAATTCTGTAGGGATGGCCCTGGAGTGTGTTTGCGGGTGATACAAACAG  950
      |||  |  |||  ||||  ||||||| | | |||| || |||  ||||| 
seq2  AGA--TTGGTA-CGATG--CCTGGAG-GAGCTTGC-GGCGAT--AAACA-  923

seq1  CCTCCTGCTATACTGTTTCTCTTGAGTCCCTTTTCTGGTTCCTAAGTCAA  1000
       ||||||||||||||||  |||||| | | ||| |  | ||| | |   |
seq2  -CTCCTGCTATACTGTT--TCTTGA-TGCGTTTGC--GATCCCAGG---A  964

seq1  CTGTTGTCAAGCCCACCTGCCCACTCAGAGAGCCATGTGACTTT  1044
       || || || |||   ||| |||| |||||   |||||||||||
seq2  ATGATG-CAGGCC--ACTGACCAC-CAGAG---CATGTGACTTT  1001