BAC Information

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BAC

Clone NameB6Ng01-035J02
Chromosome19 (Build37)
Map Location 5,626,306 - 5,778,028
singlet/doubletdoublet
Overlap geneRela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1
Upstream geneGm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip
Downstream gene2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035J02.bB6Ng01-035J02.g
ACCDH863997DH863998
length755743
definitionDH863997|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J02, 5' end.DH863998|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,626,306 - 5,627,020)(5,777,296 - 5,778,028)
sequence
gaattctgtttcagtttcctatgtgcagaaatgataggtttatacaacca
tgcctaattttttctatgaagtaaaatttaccttttttttttttgctgac
ttttgtgcttttatgtcatagtcaaggaattattgccaaatctatctatc
tatctatctatctatctatctatctatctatctatctatttatagtatta
aataaatagtgctagttcagtttctattgctccgatgaagtgccatgatc
aaatacagcttggggtggtaagagtttacttcatcttacaacttactgtc
taccatccagagaagtcagggcaggaacctagaggcaggagctgatgcag
aagccgtggaggactgttgctcactggcttgctcagcccactttctgaga
gaacccaagaccaccagcccagggtggcaccacccacatcagtcatcagt
taagaaaacacaccacagacttgctcacaggccaattttatggtggcatt
taattgaggctccctattcccagctaagtctctagacagcacacatgtgt
gcgtgtggtctgcatgtgttatattcatgttcccacatctgtggtgtata
cacgtacaggtgcaggcacccttaaacatgaaggtatgtggagattgacc
tcgctctgttggggaatccaggggcaaagcctcatgggcctgtgtgtggg
agggtgaagcttgcttccaagaggtgaagaaatgaaaatcccgacagtgc
aatct
gaattcagccgtggctgcatctgggctctgtaacagtggagggaaagatg
tttcagatgttcgtctctaatagtgaaaggaagaaaacccagttcctttc
tattgtagactttgtggtgtggcagggtatgcgcatgtgtgtgcatgctt
gtggaggccagaggtcatctggggttcctcacccagcctggagggctgga
cctggattgccagtaaggcccagggggtccccgtgtcccatccccccctc
cccccatcctttccagagttggctttaactgtgagtccctaagccacatc
actacctccagttcaactctacacctttggacagggcagctcacactagg
tctacagtaactgttgcttgccttctttatggagttattacgtgttgaga
caaggtcccccaaagcacagtttaagtgacctcactatgtggctgaggat
agatgacctagacttccttttttttttttaaagatttatttatttattaa
tgtaaagcacactgtagctgtctttcacacactccagaagagggcgtcag
atctcatcacggacggttgtgagccaccatgtggttgctgggggattttg
aactcaggacctttcggaacagcagtcaggtgctcctaaccactgagccc
acctcaccagccccccttttttaaatgttttattaattattattatttat
tttttatatgtaagtaccctggtagctggtcctcagatactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5626306_5627020
seq2: B6Ng01-035J02.b_80_800

seq1  TAGGTTTATACAACCATGCCTAATTTTTTCTATGAAGTAAAATTTACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTATACAACCATGCCTAATTTTTTCTATGAAGTAAAATTTACCTT  50

seq1  TTTTTTTTTTGCTGACTTTTGTGCTTTTATGTCATAGTCAAGGAATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGCTGACTTTTGTGCTTTTATGTCATAGTCAAGGAATTATT  100

seq1  GCCAAATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  150

seq1  TCTATTTATAGTATTAAATAAATAGTGCTAGTTCAGTTTCTATTGCTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTATAGTATTAAATAAATAGTGCTAGTTCAGTTTCTATTGCTCCG  200

seq1  ATGAAGTGCCATGATCAAATACAGCTTGGGGTGGTAAGAGTTTACTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGCCATGATCAAATACAGCTTGGGGTGGTAAGAGTTTACTTCAT  250

seq1  CTTACAACTTACTGTCTACCATCCAGAGAAGTCAGGGCAGGAACCTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAACTTACTGTCTACCATCCAGAGAAGTCAGGGCAGGAACCTAGAG  300

seq1  GCAGGAGCTGATGCAGAAGCCGTGGAGGACTGTTGCTCACTGGCTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCTGATGCAGAAGCCGTGGAGGACTGTTGCTCACTGGCTTGCTC  350

seq1  AGCCCACTTTCTGAGAGAACCCAAGACCACCAGCCCAGGGTGGCACCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTTTCTGAGAGAACCCAAGACCACCAGCCCAGGGTGGCACCACC  400

seq1  CACATCAGTCATCAGTTAAGAAAACACACCACAGACTTGCTCACAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGTCATCAGTTAAGAAAACACACCACAGACTTGCTCACAGGCCA  450

seq1  ATTTTATGGTGGCATTTAATTGAGGCTCCCTATTCCCAGCTAAGTCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGTGGCATTTAATTGAGGCTCCCTATTCCCAGCTAAGTCTCTA  500

seq1  GACAGCACACATGTGTGCGTGTGGTCTGCATGTGTTATATTCATGTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCACACATGTGTGCGTGTGGTCTGCATGTGTTATATTCATGTTCCC  550

seq1  ACATCTGTGGTGTATACACGTACAGGTGCAGGCACCCTTAAACATGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGGTGTATACACGTACAGGTGCAGGCACCCTTAAACATGAAGG  600

seq1  TATGTGGAGATTGACCTCGCTCTGTTGGGGAATCCCAGGGC-AAGCCTCA  649
      |||||||||||||||||||||||||||||||||||  |||| ||||||||
seq2  TATGTGGAGATTGACCTCGCTCTGTTGGGGAATCCAGGGGCAAAGCCTCA  650

seq1  T-GGCCTGTGTGTGGGAGGGTG-AGCTAGC-TACAAGAGGTGAAG-AATG  695
      | |||||||||||||||||||| |||| || | |||||||||||| ||||
seq2  TGGGCCTGTGTGTGGGAGGGTGAAGCTTGCTTCCAAGAGGTGAAGAAATG  700

seq1  AAAA-CCCGACAGTGCCATCT  715
      |||| ||||||||||| ||||
seq2  AAAATCCCGACAGTGCAATCT  721

seq1: chr19_5777296_5778028
seq2: B6Ng01-035J02.g_70_812 (reverse)

seq1  GGAGTATCTGAGGA-CAGCTA-CAGTGTACTTACATATAATAAATAAATA  48
      |||||||||||||| |||||| ||| |||||||||||||| |||||||||
seq2  GGAGTATCTGAGGACCAGCTACCAGGGTACTTACATATAAAAAATAAATA  50

seq1  ATAATAA-TAATAAAACATTTAAAAAA-GGGGGCTGGTGAGGT-GGCTCA  95
      ||||||| ||||||||||||||||||| ||||||||||||||| ||||||
seq2  ATAATAATTAATAAAACATTTAAAAAAGGGGGGCTGGTGAGGTGGGCTCA  100

seq1  GTGGTTAGGAGCACCTGACTGCTGTTCCG-AAGGTCCTGAGTTCAAA--T  142
      ||||||||||||||||||||||||||||| |||||||||||||||||   
seq2  GTGGTTAGGAGCACCTGACTGCTGTTCCGAAAGGTCCTGAGTTCAAAATC  150

seq1  CCCCAGCAACCACATGGTGGCTCACAACCGTCCGTGATGAGATCTGACGC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCAACCACATGGTGGCTCACAACCGTCCGTGATGAGATCTGACGC  200

seq1  CCTCTTCTGGAGTGTGTG-AAGACAGCTACAGTGTGC-TTACATTAATAA  240
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CCTCTTCTGGAGTGTGTGAAAGACAGCTACAGTGTGCTTTACATTAATAA  250

seq1  ATAAATAAATCTTTAAAAAAAAAAAAGGAAGTCTAGGTCATCTATCCTCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATCTTTAAAAAAAAAAAAGGAAGTCTAGGTCATCTATCCTCA  300

seq1  GCCACATAGTGAGGTCACTTAAACTGTGCTTTGGGGGACCTTGTCTCAAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATAGTGAGGTCACTTAAACTGTGCTTTGGGGGACCTTGTCTCAAC  350

seq1  ACGTAATAACTCCATAAAGAAGGCAAGCAACAGTTACTGTAGACCTAGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATAACTCCATAAAGAAGGCAAGCAACAGTTACTGTAGACCTAGTG  400

seq1  TGAGCTGCCCTGTCCAAAGGTGTAGAGTTGAACTGGAGGTAGTGATGTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCCTGTCCAAAGGTGTAGAGTTGAACTGGAGGTAGTGATGTGG  450

seq1  CTTAGGGACTCACAGTTAAAGCCAACTCTGGAAAGGATGGGGGGAGGGGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGACTCACAGTTAAAGCCAACTCTGGAAAGGATGGGGGGAGGGGG  500

seq1  GGATGGGACACGGGGACCCCCTGGGCCTTACTGGCAATCCAGGTCCAGCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGACACGGGGACCCCCTGGGCCTTACTGGCAATCCAGGTCCAGCC  550

seq1  CTCCAGGCTGGGTGAGGAACCCCAGATGACCTCTGGCCTCCACAAGCATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCTGGGTGAGGAACCCCAGATGACCTCTGGCCTCCACAAGCATG  600

seq1  CACACACATGCGCATACCCTGCCACACCACAAAGTCTACAATAGAAAGGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGCGCATACCCTGCCACACCACAAAGTCTACAATAGAAAGGA  650

seq1  ACTGGGTTTTCTTCCTTTCACTATTAGAGACGAACATCTGAAACATCTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTTTCTTCCTTTCACTATTAGAGACGAACATCTGAAACATCTTT  700

seq1  CCCTCCACTGTTACAGAGCCCAGATGCAGCCACGGCTGAATTC  733
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACTGTTACAGAGCCCAGATGCAGCCACGGCTGAATTC  743