BAC Information

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BAC

Clone NameB6Ng01-035L07
Chromosome19 (Build37)
Map Location 34,227,381 - 34,346,368
singlet/doubletdoublet
Overlap geneAnkrd22, Stambpl1, Acta2
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn
Downstream geneFas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035L07.bB6Ng01-035L07.g
ACCDH864103DH864104
length2561,025
definitionDH864103|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L07, 5' end.DH864104|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,227,381 - 34,227,642)(34,345,316 - 34,346,368)
sequence
taaaaagaacaaacacatattggatatctcaactattcctgaggtcctca
aaacagccctataaggtagggtttttctactcactcagcacaggtaaaag
gaggagagattgtctccttatccaaagttgcatagctcagaagtgatagg
gacatgacctaagctatgaagcacagctgacacacattctctctctctct
ctctctctctctctctctctctctctctctctctctctctctctctctct
ctctct
gaattcccgtcaccagcttctctcagtaacttcaagctttactgaaacag
cggccacatgccacatatgtcctgaccccagaacattaggatttttgtca
ggttccaaaaactgcttcctaattaggagaacggagtttatttttaccaa
acaaagcctaaagcaactttgccaaggtcagatggaattcgcaggaacat
tttttattgcttcctaacctttagctgacccacctaagttcttaacaagt
tgcgttctatgacggggctgctctttccaaagttttcaagacgatggata
gggctttaggtttaatcttacttttaatacctaagtcattaatttaaagt
aactcccccctcccacagacattctttatgggagaccaagagtggtctct
gcttgcattgctatcctagagatatggcttgagagcctaaccgaataacc
aggtgactaattaagtcttaagaactttactcctttatcaagtagccaag
ctactttgtatcgttatttcttatcatttatgagtcatgtcagtgtttca
accctaactttaaagtgtaattggctaacgcgctggggctagtaatacag
ctcagtgggtaaaagctcttgcttagcaagcctgaggtccttggtttcat
cagtccctgcgacccatctaacaaagtcagatgcaccaacacgtatctga
tctcagcacgagagtgctgagatgggaggcagaagacaggacaatgtctc
agaagctcatggccagcagcctagaatatgtatcaaagaagaaacaagat
gccttcctaacaagctacaacagaagactgactcggaacatggactctga
tttcacaggcatgcacatgctcgcgtgcgcgtgcgcgtgcacactcacga
ccccacacacaaccaccacacacacacaccctactccctgtttctgattt
aaaattaagcaaatattccctcctagctgtgtctgctagtttcgcagaga
tgcaaaatgataagaacatgctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34227381_34227642
seq2: B6Ng01-035L07.b_43_304

seq1  GAATTCTAAAAAGAACAAACACATATTGGATATCTCAACTATTCCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAAGAACAAACACATATTGGATATCTCAACTATTCCTGAGG  50

seq1  TCCTCAAAACAGCCCTATAAGGTAGGGTTTTTCTACTCACTCAGCACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAACAGCCCTATAAGGTAGGGTTTTTCTACTCACTCAGCACAGG  100

seq1  TAAAAGGAGGAGAGATTGTCTCCTTATCCAAAGTTGCATAGCTCAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGGAGAGATTGTCTCCTTATCCAAAGTTGCATAGCTCAGAAGT  150

seq1  GATAGGGACATGACCTAAGCTATGAAGCACAGCTGACACACATTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGACATGACCTAAGCTATGAAGCACAGCTGACACACATTCTCTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250

seq1  CTCTCTCCCTCT  262
      ||||||| ||||
seq2  CTCTCTCTCTCT  262

seq1: chr19_34345316_34346368
seq2: B6Ng01-035L07.g_67_1091 (reverse)

seq1  TAGAGCATGGTCTTTATCATTTTTGCATCTCATAGCAGAATACCTAGCAG  50
      ||||||||| || |||||| |||||||||||   ||  ||   |||||||
seq2  TAGAGCATGTTC-TTATCA-TTTTGCATCTC--TGCGAAA---CTAGCAG  43

seq1  ACACAAGCTAAGGGAAGGGGAATATTTTGCTTTACATTTTTAAAAATCAG  100
      |||| |||||  |||  ||||||| |||||||   | ||||  |||||||
seq2  ACAC-AGCTA--GGA--GGGAATA-TTTGCTT---AATTTT--AAATCAG  82

seq1  AAACAGTGAGTTAAGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGT  150
      |||||| ||||  || |||||||||||||   ||| ||||||||| | ||
seq2  AAACAGGGAGT--AGGGTGTGTGTGTGTG---GTGGTTGTGTGTG-GGGT  126

seq1  CTGTGAGTGTGCACGCGCACGCGCACGCGAGCATGTGCATGCCTGTGGAA  200
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  C-GTGAGTGTGCACGCGCACGCGCACGCGAGCATGTGCATGCCTGT-GAA  174

seq1  ATCAGAGGTCAATGTTCCGGAGTCAGTTCTTCTGTTGTAGCTTGTTAGGA  250
      |||||| ||| ||||||| ||||||| |||||||||||||||||||||||
seq2  ATCAGA-GTCCATGTTCC-GAGTCAG-TCTTCTGTTGTAGCTTGTTAGGA  221

seq1  AGGCATCTTGTTTCTTCTTTGATACATATTCTAGGCTGCTGGCCATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTTGTTTCTTCTTTGATACATATTCTAGGCTGCTGGCCATGAGC  271

seq1  TTCTGAGACATTGTCCTGTC-TCTGCCTCCCATCTCAGCACTCTCGTGCT  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTGAGACATTGTCCTGTCTTCTGCCTCCCATCTCAGCACTCTCGTGCT  321

seq1  GAGATCAGATACGTGTTGGTGCATCTGACTTTGTTAGATGGGTCGCAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGATACGTGTTGGTGCATCTGACTTTGTTAGATGGGTCGCAGGG  371

seq1  ACTGATGGAACCAAGGACCTCAGGCTTGCTAAGCAAGAGCTTTTACCCAC  449
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAAACCAAGGACCTCAGGCTTGCTAAGCAAGAGCTTTTACCCAC  421

seq1  TGAGCTGTATTACTAGCCCCAGCGCCTTAGCCAATTACACTTTAAAGTTA  499
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGCTGTATTACTAGCCCCAGCGCGTTAGCCAATTACACTTTAAAGTTA  471

seq1  GGGTTGAAACACTGACATGACTCATAAATGATAAGAAATAACGATACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAAACACTGACATGACTCATAAATGATAAGAAATAACGATACAAA  521

seq1  GTAGCTTGGCTACTTGATAAAGGAGTAAAGTTCTTAAGACTTAATTAGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGGCTACTTGATAAAGGAGTAAAGTTCTTAAGACTTAATTAGTC  571

seq1  ACCTGGTTATTCGGTTAGGCTCTCAAGCCATATCTCTAGGATAGCAATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTATTCGGTTAGGCTCTCAAGCCATATCTCTAGGATAGCAATGC  621

seq1  AAGCAGAGACCACTCTTGGTCTCCCATAAAGAATGTCTGTGGGAGGGGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGACCACTCTTGGTCTCCCATAAAGAATGTCTGTGGGAGGGGGG  671

seq1  AGTTACTTTAAATTAATGACTTAGGTATTAAAAGTAAGATTAAACCTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTAAATTAATGACTTAGGTATTAAAAGTAAGATTAAACCTAAA  721

seq1  GCCCTATCCATCGTCTTGAAAACTTTGGAAAGAGCAGCCCCGTCATAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCCATCGTCTTGAAAACTTTGGAAAGAGCAGCCCCGTCATAGAA  771

seq1  CGCAACTTGTTAAGAACTTAGGTGGGTCAGCTAAAGGTTAGGAAGCAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACTTGTTAAGAACTTAGGTGGGTCAGCTAAAGGTTAGGAAGCAATA  821

seq1  AAAAATGTTCCTGCGAATTCCATCTGACCTTGGCAAAGTTGCTTTAGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTCCTGCGAATTCCATCTGACCTTGGCAAAGTTGCTTTAGGCT  871

seq1  TTGTTTGGTAAAAATAAACTCCGTTCTCCTAATTAGGAAGCAGTTTTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGTAAAAATAAACTCCGTTCTCCTAATTAGGAAGCAGTTTTTGG  921

seq1  AACCTGACAAAAATCCTAATGTTCTGGGGTCAGGACATATGTGGCATGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACAAAAATCCTAATGTTCTGGGGTCAGGACATATGTGGCATGTG  971

seq1  GCCGCTGTTTCAGTAAAGCTTGAAGTTACTGAGAGAAGCTGGTGACGGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGTTTCAGTAAAGCTTGAAGTTACTGAGAGAAGCTGGTGACGGGA  1021

seq1  ATTC  1053
      ||||
seq2  ATTC  1025