BAC Information

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BAC

Clone NameB6Ng01-036F01
Chromosome19 (Build37)
Map Location 5,925,121 - 6,043,000
singlet/doubletdoublet
Overlap genePola2, Slc22a20, Capn1
Upstream geneDpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2
Downstream geneEG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036F01.bB6Ng01-036F01.g
ACCDH864530DH864531
length582765
definitionDH864530|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F01, 5' end.DH864531|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,925,121 - 5,925,702)(6,042,232 - 6,043,000)
sequence
gaattcttgagaaatctctgaccatccttggatgggtttccttgacggaa
ggacgaggacccgggaggcgcccgcactgactcttcaagaatgaattggg
ctttgcaggcgttttacaaacctaggggagttttgaagagtttaccctag
gctaggagagtgatgaaggatgcgagaaagattcagggtcggaaagcaca
gagaaaaacagagacagacacagcctgaacttgcacgagtttgctgacct
gctaagtggtttctgaggtggatggtttagaacaggatcagaaacagtta
ttgaaggacaggtcctaaagctgatgagacaaaccgagggaaacttctca
ttgcgccgttttgtgagtaaattctctgagtgtctgttcgtggttaggga
agctgaggagtcaggattcaagaaattcgaggttccaggcacaggctgat
ccccttccgggtggatgagtgctaagaggagtgaggcaaagaagaggaca
gtgataggaggaggaaatcgggatgcttgccttccagatagcagatgtgg
aaagcggtgtgtggataggagggagggatgct
gaattccaagacaggaagaaacagagacacagagaaaccatgccctaccc
caccccaccccaaaaaaaagaaagagaaaaaggaaagaaagactactgga
gagttgagagaagcgtcgggaagtaactgtgtgtgctgtcccagcatgag
gacccaagttcaaatcctcaaagaacaaatcggttgcagtcacaagccga
tactcctcctgccgcggaagacagagagagaaggctcatgggccaccagc
cttgctcaggctccttgaaagccccatgtctcgagagaatagggtgcaga
gttacagagtaggacacgatctctggtctccatgtattcacaagggcata
ggcactcagatcacacatagaaaaatggaaagggtaccaggcatctggag
gtgctggcttcagggtgatcagtgagcacagggtaagcttcagtgaggag
gtaacactggggagagaccggcaaaccctgagaaggtgcagcggatgagt
ggctgggcagagctccagcagcagggacgcaggtgcggggttttggacgc
ttagagaggaactagtgaagagtggctgataggtgagggctcagtcccgg
ggtacatcgtgggcctgtactgtgaagcatgagggcccaccggagggtgt
gaagggtgatgcttgactaagtctagtgggatcttctcagtgcctctgtg
ggatagagcttggtgggtgggaagcagaatggtatcagtgaggtttggca
agaaaggacgtcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5925121_5925702
seq2: B6Ng01-036F01.b_29_610

seq1  GAATTCTTGAGAAATCTCTGACCATCCTTGGATGGGTTTCCTTGACGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGAAATCTCTGACCATCCTTGGATGGGTTTCCTTGACGGAA  50

seq1  GGACGAGGACCCGGGAGGCGCCCGCACTGACTCTTCAAGAATGAATTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGGACCCGGGAGGCGCCCGCACTGACTCTTCAAGAATGAATTGGG  100

seq1  CTTTGCAGGCGTTTTACAAACCTAGGGGAGTTTTGAAGAGTTTACCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGGCGTTTTACAAACCTAGGGGAGTTTTGAAGAGTTTACCCTAG  150

seq1  GCTAGGAGAGTGATGAAGGATGCGAGAAAGATTCAGGGTCGGAAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAGAGTGATGAAGGATGCGAGAAAGATTCAGGGTCGGAAAGCACA  200

seq1  GAGAAAAACAGAGACAGACACAGCCTGAACTTGCACGAGTTTGCTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACAGAGACAGACACAGCCTGAACTTGCACGAGTTTGCTGACCT  250

seq1  GCTAAGTGGTTTCTGAGGTGGATGGTTTAGAACAGGATCAGAAACAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGGTTTCTGAGGTGGATGGTTTAGAACAGGATCAGAAACAGTTA  300

seq1  TTGAAGGACAGGTCCTAAAGCTGATGAGACAAACCGAGGGAAACTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGACAGGTCCTAAAGCTGATGAGACAAACCGAGGGAAACTTCTCA  350

seq1  TTGCGCCGTTTTGTGAGTAAATTCTCTGAGTGTCTGTTCGTGGTTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCCGTTTTGTGAGTAAATTCTCTGAGTGTCTGTTCGTGGTTAGGGA  400

seq1  AGCTGAGGAGTCAGGATTCAAGAAATTCGAGGTTCCAGGCACAGGCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAGTCAGGATTCAAGAAATTCGAGGTTCCAGGCACAGGCTGAT  450

seq1  CCCCTTCCGGGTGGATGAGTGCTAAGAGGAGTGAGGCAAAGAAGAGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCGGGTGGATGAGTGCTAAGAGGAGTGAGGCAAAGAAGAGGACA  500

seq1  GTGATAGGAGGAGGAAATCGGGATGCTTGCCTTCCAGATAGCAGATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGAGGAGGAAATCGGGATGCTTGCCTTCCAGATAGCAGATGTGG  550

seq1  AAAGCGGTGTGTGGATAGGAGGGAGGGATGCT  582
      ||||||||||||||||||||||||||||||||
seq2  AAAGCGGTGTGTGGATAGGAGGGAGGGATGCT  582

seq1: chr19_6042232_6043000
seq2: B6Ng01-036F01.g_67_831 (reverse)

seq1  AAAGAACGTCCTCTCTTGCCAAACCTCACTGTTCCCACTCCTGCCTCCCA  50
      |||| ||||||| |||||||||||||||||| | ||| | |||| |||||
seq2  AAAG-ACGTCCTTTCTTGCCAAACCTCACTGATACCA-TTCTGCTTCCCA  48

seq1  CCCCACCAGGCTCTATTCCCACAGAGGCACTGGAGAGATCCCACTAGACC  100
       ||||||| |||||| ||||||||||||||||   ||||||||||||| |
seq2  -CCCACCAAGCTCTA-TCCCACAGAGGCACTGAGAAGATCCCACTAGA-C  95

seq1  TAAGTCAAGCATCACCC-TCACACCCTCCGGTGGGCCCTCATGCTTCACA  149
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAGTCAAGCATCACCCTTCACACCCTCCGGTGGGCCCTCATGCTTCACA  145

seq1  GTACAGGCCCACGATGTAACCCGGGACTGAGCCCTCACCTATCAGCCACT  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTACAGGCCCACGATGTACCCCGGGACTGAGCCCTCACCTATCAGCCACT  195

seq1  CTTCACTAGTTCCTCTCTAAGCGTCCAAAACCCCGCACCTGCGTCCCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTAGTTCCTCTCTAAGCGTCCAAAACCCCGCACCTGCGTCCCTGC  245

seq1  TGCTGGAGCTCTGCCCAGCCACTCATCCGCTGCACCTTCTCAGGGTTTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGCTCTGCCCAGCCACTCATCCGCTGCACCTTCTCAGGGTTTGC  295

seq1  CGGTCTCTCCCCAGTGTTACCTCCTCACTGAAGCTTACCCTGTGCTCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTCTCCCCAGTGTTACCTCCTCACTGAAGCTTACCCTGTGCTCACT  345

seq1  GATCACCCTGAAGCCAGCACCTCCAGATGCCTGGTACCCTTTCCATTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCCTGAAGCCAGCACCTCCAGATGCCTGGTACCCTTTCCATTTTT  395

seq1  CTATGTGTGATCTGAGTGCCTATGCCCTTGTGAATACATGGAGACCAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTGATCTGAGTGCCTATGCCCTTGTGAATACATGGAGACCAGAG  445

seq1  ATCGTGTCCTACTCTGTAACTCTGCACCCTATTCTCTCGAGACATGGGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTCCTACTCTGTAACTCTGCACCCTATTCTCTCGAGACATGGGGC  495

seq1  TTTCAAGGAGCCTGAGCAAGGCTGGTGGCCCATGAGCCTTCTCTCTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGAGCCTGAGCAAGGCTGGTGGCCCATGAGCCTTCTCTCTCTGT  545

seq1  CTTCCGCGGCAGGAGGAGTATCGGCTTGTGACTGCAACCGATTTGTTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCGGCAGGAGGAGTATCGGCTTGTGACTGCAACCGATTTGTTCTT  595

seq1  TGAGGATTTGAACTTGGGTCCTCATGCTGGGACAGCACACACAGTTACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTTGAACTTGGGTCCTCATGCTGGGACAGCACACACAGTTACTT  645

seq1  CCCGACGCTTCTCTCAACTCTCCAGTAGTCTTTCTTTCCTTTTTCTCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACGCTTCTCTCAACTCTCCAGTAGTCTTTCTTTCCTTTTTCTCTTT  695

seq1  CTTTTTTTTGGGGTGGGGTGGGGTAGGGCATGGTTTCTCTGTGTCTCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTGGGGTGGGGTGGGGTAGGGCATGGTTTCTCTGTGTCTCTGT  745

seq1  TTCTTCCTGTCTTGGAATTC  769
      ||||||||||||||||||||
seq2  TTCTTCCTGTCTTGGAATTC  765