BAC Information

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BAC

Clone NameB6Ng01-036L10
Chromosome19 (Build37)
Map Location 44,064,635 - 44,209,059
singlet/doubletdoublet
Overlap geneCyp2c44, Erlin1, Chuk, Cwf19l1
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1
Downstream geneBloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036L10.bB6Ng01-036L10.g
ACCDH864798DH864799
length1,061616
definitionDH864798|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L10, 5' end.DH864799|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,207,975 - 44,209,059)(44,064,635 - 44,065,251)
sequence
gaattccctagagcctagcagaggcagagtgttcaatctgcagtttggga
gagtttagttaggaaaacttagagaaagtactgggaagacaggccagaac
cggaggaaaactctttctacaggaaacgaggcactgtgtaatgtttttag
gaaggaacattaaactgaagcagagaaagcactatggggtccatatagtc
taccttgcctccaaaccacatcaagtaggtttctccgcctcagccattcc
ctctaagttgttcagatttgtttccctccgttcctgcctctccctcattt
cccatcccgcttccccacttagcttgtcttcagactttaagtttctcatc
tgcttttctcgtccctgtttccattggccatttccttggttagcactttg
attgtagtttaactgttcctccagaccgtccttttctgttattagacgta
ttgatgaaacatgtacaatcatatccttatgctgcttgagactgttcaat
gataggaacaataagaacagagagatatacgacaatagagtctatagtat
tttgagttaaaagatgttacaaaagtaagtaagggctggtgaaatggccc
agtgagtagtggcacttcctgccatgcctggtgtcctgagtacagtccct
gatgacacacgtggtgggagagagggaactctctttagtggttctctgac
cttcacatgaacaccgacacatatacgccctcccaatacaatacctcccc
taaagtgaaaccaacaaacgatggaagtcagaattgtacagtcaaaccta
gatgttagagcagtcacttcaccacttgggacagtcccctcatcaacctt
ctggcttgtcattttcttctccctgccctgaacatgctatgcttgcctca
cacatagccttttccattattgcttgtattggagccaccgtcctttattg
taactctctgaggcttacatgagtcaagtgcttctgtattctatggtgtc
ttaggtagttgtgacattgactttgcactgtagttgtcgttggtttgctg
aacatgactga
gaattctagccatgaataaaaaggaataaaatccttggtccagtgtggcg
ggactccgaaaccatgatgcaacaggagatgagaagtgtgcctgccacat
tgcactgttttacttatatgaatcgtctcacgaagctgccctggagtaga
aatctacgatgtttactagaggctggagatgggaatgggggatgggcagg
agatcctactggagctatggggtgccccaaaacagggttggctgcctaac
ttgttaaatctaccgaagttattgatgtgcaccttgaaatcctcttctag
ggtctcccaccacaaaacttcttccttccaagcagccatcatagcctgaa
tgctgcttcctcgcggagtttaacccctgctccagatttcgctgcatcag
cctcctacccgcactgcgcatgcctgagcctggtgtcctcactatggagg
tgggaggtgttaggacctatcacaggcttgactggcccaatgtttctgcc
cgtggcactgtttccagctccccccaggagtctgttgtactcgtttgttg
agtgaatgcacaaataggttcactcactgaattgtcctgcatcttgattt
ttgctcttagcttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44207975_44209059
seq2: B6Ng01-036L10.b_45_1105 (reverse)

seq1  TCAGTCATCGTTCAGCAAACACCAACCGGACAACTACACTATGCAAAGCT  50
      |||||||| |||||||||  ||||||  ||||||||||   ||||||| |
seq2  TCAGTCAT-GTTCAGCAA--ACCAAC--GACAACTACA--GTGCAAAG-T  42

seq1  CAATGGTCACATACTACCCTAAGAACACATTAGAATTACAGAAGCACTTG  100
      |||| |||||| |||| |||||| ||||  ||||| ||||||||||||| 
seq2  CAAT-GTCACA-ACTA-CCTAAG-ACACCATAGAA-TACAGAAGCACTT-  86

seq1  GACTCATGTAAAGCCTCAGAGAGTTTACAATAAGGGACGGGTGGCTCCAA  150
      ||||||||| ||||||||||||| ||||||||| |||| |||||||||||
seq2  GACTCATGT-AAGCCTCAGAGAG-TTACAATAAAGGAC-GGTGGCTCCAA  133

seq1  TCACAAGCATATATGGAAAAGGCTATGTTGTGAGGCAAGCATAGCATGTT  200
      | |||||||   ||||||||||||||| ||||||||||||||||||||||
seq2  T-ACAAGCAATAATGGAAAAGGCTATG-TGTGAGGCAAGCATAGCATGTT  181

seq1  ACAGGGCAGGGAGGAGAAAATGACAAGCATGAAGGTTGATGAGGGGGACT  250
       |||||||||||| ||||||||||||||  |||||||||||| |||||||
seq2  -CAGGGCAGGGAGAAGAAAATGACAAGCCAGAAGGTTGATGA-GGGGACT  229

seq1  GTCCCAAGTGGTGAAGTGACTTGCTCTAACATCTAAGTTCTGACTTGTAC  300
      |||||||||||||||||||| |||||||||||||| ||| |||| |||||
seq2  GTCCCAAGTGGTGAAGTGAC-TGCTCTAACATCTAGGTT-TGAC-TGTAC  276

seq1  AATTCTGACTTACATCGTTTGTTTGTTTTCACTTTAGGGGAGGTATTGTA  350
      ||||||||||| ||||||||| ||| ||||||||||||||||||||||||
seq2  AATTCTGACTTCCATCGTTTG-TTGGTTTCACTTTAGGGGAGGTATTGTA  325

seq1  TTGGGAGGGCGTATATGTGTCGGTGTTCATGTGAAGGTCAGAGAACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGCGTATATGTGTCGGTGTTCATGTGAAGGTCAGAGAACCACT  375

seq1  AAAGAGAGTTCCCTCTCT-CCACCACGTGTGTCATCAGGGACTGTACTCA  449
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGAGAGTTCCCTCTCTCCCACCACGTGTGTCATCAGGGACTGTACTCA  425

seq1  GGACACCAGGCATGGCAGGAAGTGCCACTACTCACTGGGCCATTTCACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAGGCATGGCAGGAAGTGCCACTACTCACTGGGCCATTTCACCA  475

seq1  GCCCTTACTTACTTTTGTAACATCTTTTAACTCAAAATACTATAGACTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTACTTACTTTTGTAACATCTTTTAACTCAAAATACTATAGACTCT  525

seq1  ATTGTCGTATATCTCTCTGTTCTTATTGTTCCTATCATTGAACAGTCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCGTATATCTCTCTGTTCTTATTGTTCCTATCATTGAACAGTCTCA  575

seq1  AGCAGCATAAGGATATGATTGTACATGTTTCATCAATACGTCTAATAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATAAGGATATGATTGTACATGTTTCATCAATACGTCTAATAACA  625

seq1  GAAAAGGACGGTCTGGAGGAACAGTTAAACTACAATCAAAGTGCTAACCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACGGTCTGGAGGAACAGTTAAACTACAATCAAAGTGCTAACCA  675

seq1  AGGAAATGGCCAATGGAAACAGGGACGAGAAAAGCAGATGAGAAACTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGCCAATGGAAACAGGGACGAGAAAAGCAGATGAGAAACTTAA  725

seq1  AGTCTGAAGACAAGCTAAGTGGGGAAGCGGGATGGGAAATGAGGGAGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAGACAAGCTAAGTGGGGAAGCGGGATGGGAAATGAGGGAGAGG  775

seq1  CAGGAACGGAGGGAAACAAATCTGAACAACTTAGAGGGAATGGCTGAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACGGAGGGAAACAAATCTGAACAACTTAGAGGGAATGGCTGAGGC  825

seq1  GGAGAAACCTACTTGATGTGGTTTGGAGGCAAGGTAGACTATATGGACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCTACTTGATGTGGTTTGGAGGCAAGGTAGACTATATGGACCC  875

seq1  CATAGTGCTTTCTCTGCTTCAGTTTAATGTTCCTTCCTAAAAACATTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCTTTCTCTGCTTCAGTTTAATGTTCCTTCCTAAAAACATTACA  925

seq1  CAGTGCCTCGTTTCCTGTAGAAAGAGTTTTCCTCCGGTTCTGGCCTGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTCGTTTCCTGTAGAAAGAGTTTTCCTCCGGTTCTGGCCTGTCT  975

seq1  TCCCAGTACTTTCTCTAAGTTTTCCTAACTAAACTCTCCCAAACTGCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACTTTCTCTAAGTTTTCCTAACTAAACTCTCCCAAACTGCAGA  1025

seq1  TTGATCACTCTGCCTCTGCTAGGCTCTAGGGAATTC  1085
      |||| |||||||||||||||||||||||||||||||
seq2  TTGAACACTCTGCCTCTGCTAGGCTCTAGGGAATTC  1061

seq1: chr19_44064635_44065251
seq2: B6Ng01-036L10.g_71_686

seq1  GAATTCTAGCCATGAATAAAAAGGAATAAAATCCTTGGTCCAGTGTGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGCCATGAATAAAAAGGAATAAAATCCTTGGTCCAGTGTGGCG  50

seq1  GGACTCCGAAACCATGATGCAACAGGAGATGAGAAGTGTGCCTGCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCGAAACCATGATGCAACAGGAGATGAGAAGTGTGCCTGCCACAT  100

seq1  TGCACTGTTTTACTTATATGAATCGTCTCACGAAGCTGCCCTGGAGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTTTTACTTATATGAATCGTCTCACGAAGCTGCCCTGGAGTAGA  150

seq1  AATCTACGATGTTTACTAGAGGCTGGAGATGGGAATGGGGGATGGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACGATGTTTACTAGAGGCTGGAGATGGGAATGGGGGATGGGCAGG  200

seq1  AGATCCTACTGGAGCTATGGGGTGCCCCAAAACAGGGTTGGCTGCCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTACTGGAGCTATGGGGTGCCCCAAAACAGGGTTGGCTGCCTAAC  250

seq1  TTGTTAAATCTACCGAAGTTATTGATGTGCACCTTGAAATCCTCTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATCTACCGAAGTTATTGATGTGCACCTTGAAATCCTCTTCTAG  300

seq1  GGTCTCCCACCACAAAACTTCTTCCTTCCAAGCAGCCATCATAGCCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCACCACAAAACTTCTTCCTTCCAAGCAGCCATCATAGCCTGAA  350

seq1  TGCTGCTTCCTCGCGGAGTTTAACCCCTGCTCCAGATTTCGCTGCATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTCCTCGCGGAGTTTAACCCCTGCTCCAGATTTCGCTGCATCAG  400

seq1  CCTCCTACCCGCACTGCGCATGCCTGAGCCTGGTGTCCTCACTATGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACCCGCACTGCGCATGCCTGAGCCTGGTGTCCTCACTATGGAGG  450

seq1  TGGGAGGTGTTAGGACCTAGCACAGGCTTGACTGGCCCAATGTTTCTGCC  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGGAGGTGTTAGGACCTATCACAGGCTTGACTGGCCCAATGTTTCTGCC  500

seq1  CGTGGCACTGTTTCCAGCTCCCCCCAGGAGTCTGTTGTACACGTTTGTTG  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGTGGCACTGTTTCCAGCTCCCCCCAGGAGTCTGTTGTACTCGTTTGTTG  550

seq1  AGTGAATGCACAAATAGGTTCACTCACTGACTTGCCCTGCATCCTGATAT  600
      |||||||||||||||||||||||||||||| ||| |||||||| |||| |
seq2  AGTGAATGCACAAATAGGTTCACTCACTGAATTGTCCTGCATCTTGAT-T  599

seq1  TTTGCTCTTAGCTAACA  617
      ||||||||||||| |||
seq2  TTTGCTCTTAGCTTACA  616