BAC Information

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BAC

Clone NameB6Ng01-037P06
Chromosome19 (Build37)
Map Location 11,218,934 - 11,220,074
singlet/doubletsinglet
Overlap gene1700025F22Rik
Upstream geneLOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395
Downstream geneMs4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037P06.bB6Ng01-037P06.g
ACCDH865663DH865664
length1,124776
definitionDH865663|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P06, 5' end.DH865664|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatcccacatctgtggtgcattgtcttgattactaattgatgt
aaaaggatgcagcctactgagggtggtgccatgcctaggcaagtgtgtcc
gggctgtgtaagaaagctagctgagcaagccagagggagcaagccagtaa
gtgatgtttctccatggttcctgcctcaatgtttctacttcgagttctat
cttgagtttcctctataatggactgtaaactgatataaaccctttctttc
cctaaattgcttttggtcatggtattcatcacagcaacagaaagcaatct
gaaacagtcagtaacagtgtacatgtgcactatgccaaaaaattcattta
acaggacatcagagttgttatttaaagtagtgagtcaaggggggaaaaga
tacaaagagctttgagactagagagtccgactatgtgcttcatccacagc
catcagaaacatgctaagacatcctacaacatccaaagaagtctagatcc
atcaaaaaatccagaataaattagtaagatttatcagtgttacagaacat
aagtttcctgtaagggaaaaaaattaactgggtgtctgtgtaatttgtta
cacttacctagtaagggaattcacattgttctgaatattgaacccttgca
aataaagctgctatgaataccaataagtcttgatacagacatattccttg
ttcctcttatatatggatacttttcattttctaaagaaactacccaagta
tttccaaagtatttattgcctattgcatttctgtatcacccacaccccca
ccaaatagaggccaaacaagtgttcttgtttgttgtattcagataacttt
gcccagcaaaacttgttctataaacaccccttctccaagtggccttataa
tacagttgctggttaacgctctttttaaaaaaaaataaaaatgatgatcc
tgtaacatctctttccatgtaactaaagcttcagcgagtgtttgaattct
agttacaagaaccatatattatgtggttcttttaaggcataaagttaatt
ggtgctttccttttatccggtaaatttttgttatggttaaacttccagca
catatacaatatatttcatcatat
gaattctatgtcttcatccaaaggctgctagtggaagactgacttccagg
cacctagggtgggagtattaagctcacacccacagtgacacacctactcc
aacaagggcacacctattccaacaagggcacacctccaaatggtgccact
ccctggtgtaagaatatacaaaccatcacaggtgtatttgcttctttttg
ttttagagctttcagacgtactgtcaagctgctagtgtatgctctctcca
gtttctttttggaggcactcagaactctgagttttcctcttagcactgct
ttcattgtgtcccaaaagtttgggtttgttgtaccttcattttcattgaa
ttctaaaaagtttttaatgtctttctttatttcttccttgaccaagttat
cattgagtagggcattgttcatgtgtatgtgggcttttttgtttttgttg
ttattgaagagcagccttagtctgtggtgatctgataggatgtatgggat
tgcttcaatcttcttgtatctgttgagacctgttttgtgaccgattatgt
ggtcagttttggagaaggtaccatgaggtgctgagaagacggtatattct
tttgttttaggatgaaatgttctattgatatctgttaaatccatttggtt
cataacttctgttagtttcactgtgtctctgtttagtttctgttttcatg
atctgtccattgatgagagtggggtgttaaagtctcccactattattttg
tgaggtcaatgtgtgctttaaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11218934_11220074
seq2: B6Ng01-037P06.b_44_1167 (reverse)

seq1  ATATGATGGAAATATATTGTATATGTGTGTGAAAGTTTAAAACCATAAAC  50
      ||||||| |||||||||||||||||||  || ||||||  |||||| |||
seq2  ATATGAT-GAAATATATTGTATATGTG-CTGGAAGTTT--AACCAT-AAC  45

seq1  AAAAATATTACCAGATAAAAGGAAAGACAACCAAATTAAAACTTTATGCC  100
      |||||| ||||| |||||||||||||   ||||| |   |||||||||||
seq2  AAAAAT-TTACCGGATAAAAGGAAAG--CACCAATT---AACTTTATGCC  89

seq1  CTAAAAGACCAACATTATTATATGGTTCTTTGTAACTAGAATTCAAAACA  150
       ||||||| | ||| || |||||||||| ||||||||||||||| |||||
seq2  TTAAAAGAACCACA-TAATATATGGTTC-TTGTAACTAGAATTC-AAACA  136

seq1  CTCGCTGAAGCTTTAGTTACATGGAAAAGAGATGTTTACAGGATCATCAT  200
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  CTCGCTGAAGCTTTAGTTACATGG-AAAGAGATG-TTACAGGATCATCAT  184

seq1  TTTTATTTTTTTTTAAAAAAGAGCGTTAACCAGCAACTGTATTATAAGGC  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTTTT-AAAAAGAGCGTTAACCAGCAACTGTATTATAAGGC  233

seq1  CACTTGGAGAAGGGGTGTTTATAGAACAAGTTTTGCTGGGCAAAGTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAGAAGGGGTGTTTATAGAACAAGTTTTGCTGGGCAAAGTTATC  283

seq1  TGAATACAACAAACAAGAACACTTGTTTGGCCTCTATTTGGTGGGGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACAACAAACAAGAACACTTGTTTGGCCTCTATTTGGTGGGGGTGT  333

seq1  GGGTGATACAGAAATGCAATAGGCAATAAATACTTTGGAAATACTTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATACAGAAATGCAATAGGCAATAAATACTTTGGAAATACTTGGGT  383

seq1  AGTTTCTTTAGAAAATGAAAAGTATCCATATATAAGAGGAACAAGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTTAGAAAATGAAAAGTATCCATATATAAGAGGAACAAGGAATA  433

seq1  TGTCTGTATCAAGACTTATTGGTATTCATAGCAGCTTTATTTGCAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTATCAAGACTTATTGGTATTCATAGCAGCTTTATTTGCAAGGGT  483

seq1  TCAATATTCAGAACAATGTGAATTCCCTTACTAGGTAAGTGTAACAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTCAGAACAATGTGAATTCCCTTACTAGGTAAGTGTAACAAATT  533

seq1  ACACAGACACCCAGTTAATTTTTTTCCCTTACAGGAAACTTATGTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACCCAGTTAATTTTTTTCCCTTACAGGAAACTTATGTTCTGT  583

seq1  AACACTGATAAATCTTACTAATTTATTCTGGATTTTTTGATGGATCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGATAAATCTTACTAATTTATTCTGGATTTTTTGATGGATCTAGA  633

seq1  CTTCTTTGGATGTTGTAGGATGTCTTAGCATGTTTCTGATGGCTGTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGGATGTTGTAGGATGTCTTAGCATGTTTCTGATGGCTGTGGAT  683

seq1  GAAGCACATAGTCGGACTCTCTAGTCTCAAAGCTCTTTGTATCTTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACATAGTCGGACTCTCTAGTCTCAAAGCTCTTTGTATCTTTTCCC  733

seq1  CCCTTGACTCACTACTTTAAATAACAACTCTGATGTCCTGTTAAATGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGACTCACTACTTTAAATAACAACTCTGATGTCCTGTTAAATGAAT  783

seq1  TTTTTGGCATAGTGCACATGTACACTGTTACTGACTGTTTCAGATTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCATAGTGCACATGTACACTGTTACTGACTGTTTCAGATTGCTT  833

seq1  TCTGTTGCTGTGATGAATACCATGACCAAAAGCAATTTAGGGAAAGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTGTGATGAATACCATGACCAAAAGCAATTTAGGGAAAGAAAG  883

seq1  GGTTTATATCAGTTTACAGTCCATTATAGAGGAAACTCAAGATAGAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATATCAGTTTACAGTCCATTATAGAGGAAACTCAAGATAGAACTC  933

seq1  GAAGTAGAAACATTGAGGCAGGAACCATGGAGAAACATCACTTACTGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAACATTGAGGCAGGAACCATGGAGAAACATCACTTACTGGCT  983

seq1  TGCTCCCTCTGGCTTGCTCAGCTAGCTTTCTTACACAGCCCGGACACACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTCTGGCTTGCTCAGCTAGCTTTCTTACACAGCCCGGACACACT  1033

seq1  TGCCTAGGCATGGCACCACCCTCAGTAGGCTGCATCCTTTTACATCAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGGCATGGCACCACCCTCAGTAGGCTGCATCCTTTTACATCAATT  1083

seq1  AGTAATCAAGACAATGCACCACAGATGTGGGATCTGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCAAGACAATGCACCACAGATGTGGGATCTGAATTC  1124