BAC Information

Click to search

BAC

Clone NameB6Ng01-038J06
Chromosome19 (Build37)
Map Location 38,723,796 - 38,724,941
singlet/doubletsinglet
Overlap genePlce1
Upstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
Downstream geneEG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038J06.g
ACCDH866102
length1,143
definitionDH866102|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacagctttcccatttcaattctttcactctctcgatttcaact
ctttcactctctcttgcagagatttttgggtgtatcaccacaaatggctc
taccacagaatcactcagtgtggtggagagcgtctgtaatttcaggacta
gagaaggtgagacaggaagattatgagtttaaagccagtctaggtgggtg
gtggtggcgcacgcctttaatcccagcacttgggaggcaaaggcaggcgg
atttctgagttccaggacagcctggtctacagagtgagttccaggacagc
cagggctacacagagaaaccctgtctcaaaaatcaaaaaacaaaaaaaac
aaaacaaaaaaaaagacagtctagatgagacagtaaatttcaagccagcc
agggcttaacagtgagtggtgagatcttaactcaaaaaaatatatgaaga
aaaatttttaaggttccactgtctttgccctccactgatacaaagctaga
tggttctaaacttattcctggtaacaatttctgttttgttttccctataa
attctattatagccacatgatcacatctgtttaatcctaaaagtcagata
ggtgactgagcgattcactttatacttatctgtctcctggactaaaccac
caaaaacctactgtagcagaaattggggactaccacttggttcctctaac
cttatatttttaaaagtctaacatgtatcccagaatctagccactatgac
cccaaagttcaattctttgaatagtttataaaatagctgtgcttactgga
aattgaatcacactaaagctagatgccagggacagtttttggtactgata
ctttatgtacagtgaaattagtcacatacagaatgctttttctcagaagc
atctaacttgaaaacatggtttcaaataaagtactctacagaggaactaa
cagtaaatcttctgtagtaacaacttgtgtaatatgtatagacgagatga
tgaaacaaaatacataaatactaggatgacatatttgaaacaacaatata
tcctgagataaaatcacttgtcccatggatggatctagtgtaagtaggag
gggacgggaaagagaataaaacggttaaaaaaaggagaagaag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38723796_38724941
seq2: B6Ng01-038J06.g_63_1205 (reverse)

seq1  CTTCTTCTTTTTTTTTTAACTGTTTTATTCTCATCTCCGT-CACTCCTAC  49
      ||||||||  |||||||||| ||||||||||| |  |||| | |||||||
seq2  CTTCTTCTCCTTTTTTTAACCGTTTTATTCTCTTTCCCGTCCCCTCCTAC  50

seq1  TTATCACTAGATCCATCATTGTGAC-AGTGATTTGTATCTCAGGATATAT  98
      ||| |||||||||||||  || ||| |||||||| |||||||||||||||
seq2  TTA-CACTAGATCCATCCATGGGACAAGTGATTT-TATCTCAGGATATAT  98

seq1  TGTTGTTTCAAATATGTCATCTTAGTTATTTATGTATTTTGTTTCATCAT  148
      ||||||||||||||||||||| ||| ||||||||||||||||||||||||
seq2  TGTTGTTTCAAATATGTCATCCTAG-TATTTATGTATTTTGTTTCATCAT  147

seq1  CTCGTCTATTACATATTACACAAGTTGTTACTACAGAAGATTTACTGTTA  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTA-TACATATTACACAAGTTGTTACTACAGAAGATTTACTGTTA  196

seq1  GTTCCTCTGTAGAGTACTTTATTTTGAAACCATGTTTTCAAGTTAGATGC  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTCCTCTGTAGAGTACTTTA-TTTGAAACCATGTTTTCAAGTTAGATGC  245

seq1  TTCTGAGAAAAAGCATTCTGTATGTGACTAATTTCACTGTACATAAAGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAAAAAGCATTCTGTATGTGACTAATTTCACTGTACATAAAGTA  295

seq1  TCAGTACCAAAAACTGTCCCTGGCATCTAGCTTTAGTGTGATTCAATTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCAAAAACTGTCCCTGGCATCTAGCTTTAGTGTGATTCAATTTC  345

seq1  CAGTAAGCACAGCTATTTTATAAACTATTCAAAGAATTGAACTTTGGGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCACAGCTATTTTATAAACTATTCAAAGAATTGAACTTTGGGGT  395

seq1  CATAGTGGCTAGATTCTGGGATACATGTTAGACTTTTAAAAATATAAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGCTAGATTCTGGGATACATGTTAGACTTTTAAAAATATAAGGT  445

seq1  TAGAGGAACCAAGTGGTAGTCCCCAATTTCTGCTACAGTAGGTTTTTGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAACCAAGTGGTAGTCCCCAATTTCTGCTACAGTAGGTTTTTGGT  495

seq1  GGTTTAGTCCAGGAGACAGATAAGTATAAAGTGAATCGCTCAGTCACCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGTCCAGGAGACAGATAAGTATAAAGTGAATCGCTCAGTCACCTA  545

seq1  TCTGACTTTTAGGATTAAACAGATGTGATCATGTGGCTATAATAGAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTTAGGATTAAACAGATGTGATCATGTGGCTATAATAGAATTT  595

seq1  ATAGGGAAAACAAAACAGAAATTGTTACCAGGAATAAGTTTAGAACCATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAAACAAAACAGAAATTGTTACCAGGAATAAGTTTAGAACCATC  645

seq1  TAGCTTTGTATCAGTGGAGGGCAAAGACAGTGGAACCTTAAAAATTTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGTATCAGTGGAGGGCAAAGACAGTGGAACCTTAAAAATTTTTC  695

seq1  TTCATATATTTTTTTGAGTTAAGATCTCACCACTCACTGTTAAGCCCTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATTTTTTTGAGTTAAGATCTCACCACTCACTGTTAAGCCCTGG  745

seq1  CTGGCTTGAAATTTACTGTCTCATCTAGACTGTCTTTTTTTTTGTTTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGAAATTTACTGTCTCATCTAGACTGTCTTTTTTTTTGTTTTGT  795

seq1  TTTTTTTGTTTTTTGATTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTTTGATTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGC  845

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTGGAACTCAGAAATCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTGGAACTCAGAAATCC  895

seq1  GCCTGCCTTTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTTTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCA  945

seq1  CCCACCTAGACTGGCTTTAAACTCATAATCTTCCTGTCTCACCTTCTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTAGACTGGCTTTAAACTCATAATCTTCCTGTCTCACCTTCTCTA  995

seq1  GTCCTGAAATTACAGACGCTCTCCACCACACTGAGTGATTCTGTGGTAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAAATTACAGACGCTCTCCACCACACTGAGTGATTCTGTGGTAGA  1045

seq1  GCCATTTGTGGTGATACACCCAAAAATCTCTGCAAGAGAGAGTGAAAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGTGGTGATACACCCAAAAATCTCTGCAAGAGAGAGTGAAAGAG  1095

seq1  TTGAAATCGAGAGAGTGAAAGAATTGAAATGGGAAAGCTGTGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCGAGAGAGTGAAAGAATTGAAATGGGAAAGCTGTGGAATTC  1143