BAC Information

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BAC

Clone NameB6Ng01-038N24
Chromosome19 (Build37)
Map Location 8,174,505 - 8,175,699
singlet/doubletsinglet
Overlap geneEG434674
Upstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
Downstream geneLOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038N24.bB6Ng01-038N24.g
ACCDH866305DH866306
length1,186669
definitionDH866305|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N24, 5' end.DH866306|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtttgcaaaattcttctgcagaggatttcattcacaaagaact
gttttagtggaatgttagtgatatatgctattgtgctacatttaatacat
ttagatatatattgtcattttatcctttcattaatcccacagtaccctac
agggcataagaggaacataggatgatggtgggattaaactgactcttttc
ttcttcccaacaaatactcaactactttttctctctgtgtgtcttttatt
ttttggtgaactaatatgatacattaagatttcttaaaggatctatttat
aggagcattggacaatatacaagaggctacattattttaaaaaaatccct
ctcccccatctagaacaatcattaatcatccatcatatctcaagatgatg
gaactttattcactgaatttcaggcatgtctagtgcagataaccacagct
gttgagagtgcaatggtcatgtcatgccttgaatacagcattacatatca
cactgtacctaactttagagcttatattatgttataactctctttcttta
tggttcctgattttttgaaatagtgttgtagacatctagtttacgactta
ctcatttaataattatttaatttaataatcacttatcttctgaagaagaa
gcttttagtaactttcttaaactgttgaaagaagcttctctgatcaaaac
tgaaaacagcattaatatatgattaatatatgaacatgaacaaaatcatt
aggagacacttaaactggcacacaataccgatatagataaaaagctgaat
tagctctactgctagggcccaagagtccattattgaataaaatgatgtag
acaattgactagcagcagcctacataacaactttcagtgcagtgagacta
accagcagagaataagattccaggttagttttagcttggtatttatatgt
ccagcaaccagaagttgtagtaatattcagcatttgactctatcattctt
tctttttgggattcagtcagaaagaggtgagtaagtagtactgatccagt
gaagatagagccagtcaggaagtattgattcagttctctaagaacacaga
aggtctttgatggatggcgagacaagagcacttgttcaaagacactgtca
taagaacaaagccacaacagattgaaaagactttac
gaattctttgctcaagaagataaggagattaaacgatgtttgatctcaga
gtaaaatcccacccagataaatatattgtttatgtatttgtggttgaaca
aggcacgtttaggaggtatggcctttctggagtagctgtagccttgttgg
aggaagtatgccactgtggccataggctttggggtctcagtactaagatc
tacccatatgaaagagagtctccttctggctgcctgcaacaaacaatatt
tttctgcctacctttggatctaaatacagaattctcagctccttctctag
catcatgattgcctgtatgctggcatgcttcctgccatgatgataattga
ttgaacctctaaatctataagccagtcacaattaaatgtcctgtataaga
gttattttgggaagtgaaagatctgtatgataagaacttcaagtctctga
agaaagaaattaaagatctcagaagatctcccatgctcatggattggcag
gatcaatatagtaaaaatggacatcttgctgaaaacaatctacagattca
atgcaatccccataaaaatttcaacacaattcttcaacgaattagaaagt
gtaacttgtctggggaacaccaggaccaagaagtaggaatgggtgggtag
agaagtggcaggggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8174505_8175699
seq2: B6Ng01-038N24.b_46_1231 (reverse)

seq1  GTAAAGGTCCTTTTCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGT  50
      ||||| |||  ||| ||||||||| |||||  |||  ||||| |||||||
seq2  GTAAA-GTC--TTTTCAATCTGTT-GTGGC--TTTGTTCTTA-TGACAGT  43

seq1  GTCTTTGTACAAGTGCCTCTTGCTCT-GCCACTCATCATAAGACC-TCTG  98
      ||||||| ||||||| |||||| ||| ||||  ||||| |||||| ||||
seq2  GTCTTTGAACAAGTG-CTCTTG-TCTCGCCATCCATCA-AAGACCTTCTG  90

seq1  CTGTTCTTAGAG-ACTGGATCAATACTACCTGACTTGCTCTATCTTCACT  147
       ||||||||||| |||| ||||||||| ||||||| ||||||||||||||
seq2  -TGTTCTTAGAGAACTGAATCAATACTTCCTGACTGGCTCTATCTTCACT  139

seq1  GGATCAGTACTACCTTACTCA-CTCTATCTTGACTGGATTCCAAATAGAA  196
      |||||||||||| |||||||| |||| || |||||| || ||||| ||||
seq2  GGATCAGTACTA-CTTACTCACCTCTTTC-TGACTGAATCCCAAAAAGAA  187

seq1  AGAATGATAAGAGTCAAATGCTGAATA-TACTACAACTTCTGGTTGCTGG  245
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  AGAATGAT-AGAGTCAAATGCTGAATATTACTACAACTTCTGGTTGCTGG  236

seq1  ACATATAAATACCAAGCTAAAACTAACCTGGAATCTTATTCTCTGCTGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAATACCAAGCTAAAACTAACCTGGAATCTTATTCTCTGCTGGT  286

seq1  TAGTCTCACTGCACTGAAAGTTGTTATGTAGGCTGCTGCTAGTCAATTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCACTGCACTGAAAGTTGTTATGTAGGCTGCTGCTAGTCAATTGT  336

seq1  CTACATCATTTTATTCAATAATGGACTCTTGGGCCCTAGCAGTAGAGCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCATTTTATTCAATAATGGACTCTTGGGCCCTAGCAGTAGAGCTA  386

seq1  ATTCAGCTTTTTATCTATATCGGTATTGTGTGCCAGTTTAAGTGTCTCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTTTTATCTATATCGGTATTGTGTGCCAGTTTAAGTGTCTCCT  436

seq1  AATGATTTTGTTCATGTTCATATATTAATCATATATTAATGCTGTTTTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTGTTCATGTTCATATATTAATCATATATTAATGCTGTTTTCA  486

seq1  GTTTTGATCAGAGAAGCTTCTTTCAACAGTTTAAGAAAGTTACTAAAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATCAGAGAAGCTTCTTTCAACAGTTTAAGAAAGTTACTAAAAGC  536

seq1  TTCTTCTTCAGAAGATAAGTGATTATTAAATTAAATAATTATTAAATGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCAGAAGATAAGTGATTATTAAATTAAATAATTATTAAATGAG  586

seq1  TAAGTCGTAAACTAGATGTCTACAACACTATTTCAAAAAATCAGGAACCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCGTAAACTAGATGTCTACAACACTATTTCAAAAAATCAGGAACCA  636

seq1  TAAAGAAAGAGAGTTATAACATAATATAAGCTCTAAAGTTAGGTACAGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGAGAGTTATAACATAATATAAGCTCTAAAGTTAGGTACAGTG  686

seq1  TGATATGTAATGCTGTATTCAAGGCATGACATGACCATTGCACTCTCAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTAATGCTGTATTCAAGGCATGACATGACCATTGCACTCTCAAC  736

seq1  AGCTGTGGTTATCTGCACTAGACATGCCTGAAATTCAGTGAATAAAGTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGTTATCTGCACTAGACATGCCTGAAATTCAGTGAATAAAGTTC  786

seq1  CATCATCTTGAGATATGATGGATGATTAATGATTGTTCTAGATGGGGGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTTGAGATATGATGGATGATTAATGATTGTTCTAGATGGGGGAG  836

seq1  AGGGATTTTTTTAAAATAATGTAGCCTCTTGTATATTGTCCAATGCTCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTTTTTAAAATAATGTAGCCTCTTGTATATTGTCCAATGCTCCT  886

seq1  ATAAATAGATCCTTTAAGAAATCTTAATGTATCATATTAGTTCACCAAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGATCCTTTAAGAAATCTTAATGTATCATATTAGTTCACCAAAA  936

seq1  AATAAAAGACACACAGAGAGAAAAAGTAGTTGAGTATTTGTTGGGAAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGACACACAGAGAGAAAAAGTAGTTGAGTATTTGTTGGGAAGAA  986

seq1  GAAAAGAGTCAGTTTAATCCCACCATCATCCTATGTTCCTCTTATGCCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTCAGTTTAATCCCACCATCATCCTATGTTCCTCTTATGCCCT  1036

seq1  GTAGGGTACTGTGGGATTAATGAAAGGATAAAATGACAATATATATCTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTACTGTGGGATTAATGAAAGGATAAAATGACAATATATATCTAA  1086

seq1  ATGTATTAAATGTAGCACAATAGCATATATCACTAACATTCCACTAAAAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAAATGTAGCACAATAGCATATATCACTAACATTCCACTAAAAC  1136

seq1  AGTTCTTTGTGAATGAAATCCTCTGCAGAAGAATTTTGCAAACTGAATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGTGAATGAAATCCTCTGCAGAAGAATTTTGCAAACTGAATTC  1186