BAC Information

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BAC

Clone NameB6Ng01-038P07
Chromosome19 (Build37)
Map Location 24,968,240 - 25,150,383
singlet/doubletdoublet
Overlap geneFoxd4, Cbwd1, Dock8, LOC100042503
Upstream geneApba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195
Downstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038P07.bB6Ng01-038P07.g
ACCDH866366DH866367
length1,1251,118
definitionDH866366|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P07, 5' end.DH866367|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,968,240 - 24,969,375)(25,149,259 - 25,150,383)
sequence
gaattcataactttcatttgcagagcgtatgtgtgcatgggatcactgtg
agcacgccctgagttaatgcaggtgatcacctaaggtgagtcccacagtg
actccctaagatgaatctacagtgactgtcatcattatatagctggagaa
actgaggctcagaaaggttgggctgtttgcctcaagtcacagaaagattg
gagaacaagagagaaggaaaaaatcattcagatttcacacaatgactcaa
ctcctccccagggtctagccttggaaaccagactagttcatgagagtctg
cacttgatttcaaccaacaaatgattcattcttacagtaatcatctaaat
aatttaaaatctataatctatccaggattaaagctttaaaactattgaat
gccaaatatactacacatattaaaatttatttgcacatattatgtgatat
atgatatgttattaagtgccaaatgtaatagaccaaaaagtataagaaaa
ttaaacaacacttagtattatatagaataccaactgcttgccaaataggt
acaaaatgattaggaaataagaactattaataaatacagtgaatttttga
cctaccaacctagcctttcctacttgttttaaatgaataataccttttaa
acaaaaatattggccacttgaacaatacttatatccaactaaatttaaat
ttaaattttataccattcacttacacacttgccagtgttataaaaacaat
agatctcaatcagcatatgcagtttcaacagtgtaccagaattcttttga
aataagtaaaacatgaacataatttgatttattccttcccagagattctg
tgaacacagaaacctgggcaaataactgcaaaatgtaggtaattgaaatc
acaaaagctgctgtataataagagtgcaaacagaagttcgatttagtttg
caattcattcataagaagcagaaatagctaactaccttcagattttataa
acttgctctacatgcagtggtttcttgtcaatctattttatatcctgatc
ctcatacattgggttactgaaagtgatcttctttctacaagcacaggatc
atgttcttacttatcatggatgctc
gaattcactcccgcaggttgttttgtagcctctgccacaccctgtgacca
gttcccaaacagccacactactcacaaataaataacagaaaagatgaaaa
gagctgcgggtgatgtagtcctgtaccttgtctacttggccacactgtga
gtggtctaatatcctggcaagaggaaataattaaactaaagtagtggcaa
atataggttaaataagaaatgttgtcttgcaattagacccaaatgagaac
acactaggcctgtggttattagctctgtaatgccctatgtggagcagaaa
aaaaaaaaaaaaagactagatactcacagcagtccctctgaatccattct
aactccccacgatggtgtctgcagttactttttaggacccattccctcta
aagagaactgaattcaaaaacaggttcagtattataagctccttctcaag
gagagattggatttatagagaaacaaacaaaccaaccaacaaacaaaaca
aaactggagaagcagccaaaagacctacatggtgttgctgtcttagcaac
cagaactgcactctgttagcttgcctttttcccccatcttataaactaca
tcgatctctaagagtgtctacttataagcaaacacacacacacacacaca
cacacacacacacacacacacacacacactttagcctttgggacttgtac
tttggaaagcagtaagaccattgtgttcaggttggagtcagacaaacgtt
tctctccttcctcatacccttcagcatccacttccccatcttaaaatctc
agaaagtcacagtgctcttcttggaagcaggggtaatgctggctggggag
aggcagagctggcaagcactgaggtgactcattccagaagtgccagcatg
gaagagccaccactgggtaggtagtgagaccgctggctcagagcctctgg
ctacaggcatctcagcctagtcgtcccaccttgcaaccgactcaaacaag
caagtcccattgagccgtgtgaagacacaggagatggggaaatagcagac
tgggagagcactgttccacacagaatgataagcatcgctgcaaactctgt
cttaaccttctaacacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24968240_24969375
seq2: B6Ng01-038P07.b_48_1172

seq1  GAATTCATAACTTTCATTTGCAGAGCGTATGTGTGCATGGGATCACTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTTTCATTTGCAGAGCGTATGTGTGCATGGGATCACTGTG  50

seq1  AGCACGCCCTGAGTTAATGCAGGTGATCACCTAAGGTGAGTCCCACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCCCTGAGTTAATGCAGGTGATCACCTAAGGTGAGTCCCACAGTG  100

seq1  ACTCCCTAAGATGAATCTACAGTGACTGTCATCATTATATAGCTGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTAAGATGAATCTACAGTGACTGTCATCATTATATAGCTGGAGAA  150

seq1  ACTGAGGCTCAGAAAGGTTGGGCTGTTTGCCTCAAGTCACAGAAAGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTCAGAAAGGTTGGGCTGTTTGCCTCAAGTCACAGAAAGATTG  200

seq1  GAGAACAAGAGAGAAGGAAAAAATCATTCAGATTTCACACAATGACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAGAGAGAAGGAAAAAATCATTCAGATTTCACACAATGACTCAA  250

seq1  CTCCTCCCCAGGGTCTAGCCTTGGAAACCAGACTAGTTCATGAGAGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCAGGGTCTAGCCTTGGAAACCAGACTAGTTCATGAGAGTCTG  300

seq1  CACTTGATTTCAACCAACAAATGATTCATTCTTACAGTAATCATCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATTTCAACCAACAAATGATTCATTCTTACAGTAATCATCTAAAT  350

seq1  AATTTAAAATCTATAATCTATCCAGGATTAAAGCTTTAAAACTATTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATCTATAATCTATCCAGGATTAAAGCTTTAAAACTATTGAAT  400

seq1  GCCAAATATACTACACATATTAAAATTTATTTGCACATATTATGTGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATATACTACACATATTAAAATTTATTTGCACATATTATGTGATAT  450

seq1  ATGATATGTTATTAAGTGCCAAATGTAATAGACCAAAAAGTATAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGTTATTAAGTGCCAAATGTAATAGACCAAAAAGTATAAGAAAA  500

seq1  TTAAACAACACTTAGTATTATATAGAATACCAACTGCTTGCCAAATAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAACACTTAGTATTATATAGAATACCAACTGCTTGCCAAATAGGT  550

seq1  ACAAAATGATTAGGAAATAAGAACTATTAATAAATACAGTGAATTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGATTAGGAAATAAGAACTATTAATAAATACAGTGAATTTTTGA  600

seq1  CCTACCAACCTAGCCTTTCCTACTTGTTTTAAATGAATAATACCTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAACCTAGCCTTTCCTACTTGTTTTAAATGAATAATACCTTTTAA  650

seq1  ACAAAAATATTGGCCACTTGAACAATACTTATATCCAACTAAATTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATTGGCCACTTGAACAATACTTATATCCAACTAAATTTAAAT  700

seq1  TTAAATTTTATACCATTCACTTACACACTTGCCAGTGTTATAAAAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTATACCATTCACTTACACACTTGCCAGTGTTATAAAAACAAT  750

seq1  AGATCTCAATCAGCATATGCAGTTTCAACAGTGTACCAGAATTCTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAATCAGCATATGCAGTTTCAACAGTGTACCAGAATTCTTTTGA  800

seq1  AATAAGTAAAACATGAACATAATTTGATTTATTCCTTCCCAGAGATTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAAACATGAACATAATTTGATTTATTCCTTCCCAGAGATTCTG  850

seq1  TGAACACAGAAACCTGGGCAAATAACTGCAAAATGTAGGTAATTGAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGAAACCTGGGCAAATAACTGCAAAATGTAGGTAATTGAAATC  900

seq1  ACAAAAGCTGCTGTATAATAAAGAGTGCAAACAGAAGTTCGATTTAGTTT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAAAAGCTGCTGTATAAT-AAGAGTGCAAACAGAAGTTCGATTTAGTTT  949

seq1  GCAAATTCATTCATAAGAAGCAGAAATAGCTAACTACCTTCAGATTTTAT  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-AATTCATTCATAAGAAGCAGAAATAGCTAACTACCTTCAGATTTTAT  998

seq1  AAACTTGCTTCTTACATGCAAGTGGTTTCTGTCCAATCTAATTTTATATC  1050
      |||||||||   ||||||| ||||||||||   |||||| ||||||||||
seq2  AAACTTGCT--CTACATGC-AGTGGTTTCTTGTCAATCT-ATTTTATATC  1044

seq1  CTGATCCTCATACATTTGGGGTTACCTGAAAGTGAATCTTCTTTCTACAA  1100
      ||||||||||||||||  |||||| ||||||||| |||||||||||||||
seq2  CTGATCCTCATACATT--GGGTTA-CTGAAAGTG-ATCTTCTTTCTACAA  1090

seq1  GCACAGGATTCATGTTCTTACCTTATCAT-GATGCTC  1136
      |||||||| ||||||||||| |||||||| |||||||
seq2  GCACAGGA-TCATGTTCTTA-CTTATCATGGATGCTC  1125

seq1: chr19_25149259_25150383
seq2: B6Ng01-038P07.g_67_1184 (reverse)

seq1  AGGTGT-------TTAAGACAGAGTTTGGCAAGCGATGGCTGTATTCATT  43
      ||||||       |||||||||||||||   |||||| ||| || |||||
seq2  AGGTGTTAGAAGGTTAAGACAGAGTTTG--CAGCGAT-GCT-TA-TCATT  45

seq1  CTGTGTGG-ACAGTTGCTCTCCCAGTCTGCCTATTTCCCCATCTTCCTGT  92
      |||||||| |||| ||||||||||||||| ||||||||||||| ||||||
seq2  CTGTGTGGAACAG-TGCTCTCCCAGTCTG-CTATTTCCCCATC-TCCTGT  92

seq1  GTCTTCACACGGGCTCAATGGGAACTTGGCTTTGTTTGAGTCGGTTGCCA  142
      |||||||||| ||||||||||| |||||   |||||||||||||||| ||
seq2  GTCTTCACAC-GGCTCAATGGG-ACTTG--CTTGTTTGAGTCGGTTG-CA  137

seq1  GGGTGGGACGACTAGGCTGAGATGCCTGTAGCCAGAGGCTCTGAGCCAGC  192
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGACGACTAGGCTGAGATGCCTGTAGCCAGAGGCTCTGAGCCAGC  187

seq1  GGTCTCACTACCTACCCAGTGGTGGCTCCTTCCATGCTGGCACTTCTGGA  242
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTCTCACTACCTACCCAGTGGTGGCT-CTTCCATGCTGGCACTTCTGGA  236

seq1  ATGAGTCACCTCAGTGCTTGCCAGCTCCTGCCTCTCCCCAGCCAGCATTA  292
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGAGTCACCTCAGTGCTTGCCAGCT-CTGCCTCTCCCCAGCCAGCATTA  285

seq1  CCCCTGCTTCCAAGAAGAGCACTGTGACTTTCTGAGATTTTAAGATGGGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTTCCAAGAAGAGCACTGTGACTTTCTGAGATTTTAAGATGGGG  335

seq1  AAGTGGATGCTGAAGGGTATGAGGAAGGAGAGAAACGTTTGTCTGACTCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATGCTGAAGGGTATGAGGAAGGAGAGAAACGTTTGTCTGACTCC  385

seq1  AACCTGAACACAATGGTCTTACTGCTTTCCAAAGTACAAGTCCCAAAGGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAACACAATGGTCTTACTGCTTTCCAAAGTACAAGTCCCAAAGGC  435

seq1  TAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  485

seq1  GTTTGCTTATAAGTAGACACTCTTAGAGATCGATGTAGTTTATAAGATGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTATAAGTAGACACTCTTAGAGATCGATGTAGTTTATAAGATGG  535

seq1  GGGAAAAAGGCAAGCTAACAGAGTGCAGTTCTGGTTGCTAAGACAGCAAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGGCAAGCTAACAGAGTGCAGTTCTGGTTGCTAAGACAGCAAC  585

seq1  ACCATGTAGGTCTTTTGGCTGCTTCTCCAGTTTTGTTTTGTTTGTTGGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTAGGTCTTTTGGCTGCTTCTCCAGTTTTGTTTTGTTTGTTGGTT  635

seq1  GGTTTGTTTGTTTCTCTATAAATCCAATCTCTCCTTGAGAAGGAGCTTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTGTTTCTCTATAAATCCAATCTCTCCTTGAGAAGGAGCTTAT  685

seq1  AATACTGAACCTGTTTTTGAATTCAGTTCTCTTTAGAGGGAATGGGTCCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAACCTGTTTTTGAATTCAGTTCTCTTTAGAGGGAATGGGTCCT  735

seq1  AAAAAGTAACTGCAGACACCATCGTGGGGAGTTAGAATGGATTCAGAGGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAACTGCAGACACCATCGTGGGGAGTTAGAATGGATTCAGAGGG  785

seq1  ACTGCTGTGAGTATCTAGTCTTTTTTTTTTTTTTTTCTGCTCCACATAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTGAGTATCTAGTCTTTTTTTTTTTTTTTTCTGCTCCACATAGG  835

seq1  GCATTACAGAGCTAATAACCACAGGCCTAGTGTGTTCTCATTTGGGTCTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACAGAGCTAATAACCACAGGCCTAGTGTGTTCTCATTTGGGTCTA  885

seq1  ATTGCAAGACAACATTTCTTATTTAACCTATATTTGCCACTACTTTAGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGACAACATTTCTTATTTAACCTATATTTGCCACTACTTTAGTT  935

seq1  TAATTATTTCCTCTTGCCAGGATATTAGACCACTCACAGTGTGGCCAAGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTCCTCTTGCCAGGATATTAGACCACTCACAGTGTGGCCAAGT  985

seq1  AGACAAGGTACAGGACTACATCACCCGCAGCTCTTTTCATCTTTTCTGTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTACAGGACTACATCACCCGCAGCTCTTTTCATCTTTTCTGTT  1035

seq1  ATTTATTTGTGAGTAGTGTGGCTGTTTGGGAACTGGTCACAGGGTGTGGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTGAGTAGTGTGGCTGTTTGGGAACTGGTCACAGGGTGTGGC  1085

seq1  AGAGGCTACAAAACAACCTGCGGGAGTGAATTC  1125
      |||||||||||||||||||||||||||||||||
seq2  AGAGGCTACAAAACAACCTGCGGGAGTGAATTC  1118