BAC Information

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BAC

Clone NameB6Ng01-039A10
Chromosome19 (Build37)
Map Location 38,636,342 - 38,783,887
singlet/doubletdoublet
Overlap genePlce1, EG667587
Upstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
Downstream geneNoc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A10.bB6Ng01-039A10.g
ACCDH866416DH866417
length1,049701
definitionDH866416|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A10, 5' end.DH866417|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,782,834 - 38,783,887)(38,636,342 - 38,637,042)
sequence
gaattcactctaatccttcaccttttttccccctcctgtgtgtttttctt
ttttctttttctatttttaaatgctttctttaattctgtaaggctgtgac
aggatgcactctgatcatgttcattcccctctcccaagtcctcccagatt
ctcctgctcctcccctaccaacacaaatttttgtcactccctgacacagt
taactgctactggtatagtgtctgccctggagtgtgctcagtgtaccaaa
gtcactccattgaagaaaactgaccttttatttgccagcagtaattaaac
gtcaacatctcctctgggccctagtggagaaccaatagtattattctgct
aatgatgtattgccatacccatagatgagtgtatccatcgaccctcatcc
ttcaaccctcatcagagaaacttcttgcagtagactccaactgacacaga
gactcacaactagccaatgagagagaatactaagccctcaatgggatgtc
gatccttcatttcttccctcatagctcggggatctttgccgaagaagaaa
agattctaggagccagaggtggtgagtgacttcaaggaaacaatgttttc
tggacacacatgaactcccagcaattgtgacatcatgctcaagaccagct
caaggacaagccagacaagatcccagcatggaggagaggaactgggcacc
aaatcccccttttaaatgcttttattactatttcactttattgtgtttta
aaaggctttgtgtatctttatgtattcttttgttttgttttgttttgatt
tgattttcgagacagggtttctctgtatagccctagctgtcttggaactc
actttgtagaccaggctggcctcgaactcataaatccgcctgcctctgcc
tcctgagtgctgggactaaggaggcgccacacgcctgcttgtattcattt
tttttatccccttatacatctacctaactttgtcacccatgttttttctg
ggacagtttccttttctggtctcccttttaagcttttcttctacggcac
gaattcaaagccagtcttgcatatatatacagtttgaggccagcctgggc
tacatgaccttcccttcagaaaaaggaaggaaggaagtcaggaagggagg
aggagttgctcttatttttaaacactaggtgtgaggtgcttattttgtta
gtggagggtttctgtctttgctccatcaaatgcttgctaataattattgc
taataataccagccaggtggtggcagcacacgcctgtaatcctagcactc
aggaggcagaggcaggtagatctctgagttcaaggccagcctggcctgtt
gagtgagttccaggacagccaggtctatacagagaaaccctgtccaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaacccaaaaaaacaaaaaacaaaac
aaaacaaaacaacaacaacaaaataaataaataaacaaagaaagaaagaa
actaagaaacaaagaaagaatgaagaataccagtgaagcaaggttctgac
tatgctctctgataagccagagtccaaaagactaggacaggaggaccaca
gagttggaccaccctgggctgtttgttgagacccccattccaacaaagaa
gtgcatcgaagctggcatttttctcttttaccccctttcaaacccggctc
tattgcccagctactaggttgctagtggtggttgttagtggtgcttccta
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38782834_38783887
seq2: B6Ng01-039A10.b_46_1094 (reverse)

seq1  GTGCAGTAGAAAGAAAAGC-TAAAAGGGAGACCAGAAAAAGAAACTGT-C  48
      |||| |||| ||||||||| ||||||||||||||||||| |||||||| |
seq2  GTGCCGTAG-AAGAAAAGCTTAAAAGGGAGACCAGAAAAGGAAACTGTCC  49

seq1  CAGAAAAAACATGGGTGACAAAGTTAGGTAGATGTATAAAGGGGAATAAA  98
      ||||||||||||||||||||||||||||||||||||| |||||||  |||
seq2  CAGAAAAAACATGGGTGACAAAGTTAGGTAGATGTAT-AAGGGGATAAAA  98

seq1  AAAATGAATACATAGCAGGGCGTGGTGGCGCACTCCTTTAGTCCCAGCAC  148
      |||||||||||| |||| ||||| ||||||| |||| |||||||||||||
seq2  AAAATGAATACA-AGCA-GGCGT-GTGGCGC-CTCC-TTAGTCCCAGCAC  143

seq1  TCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTA  198
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGGAGGCAGAGGCAGGCGGATTTATGAGTTCGAGGCCAGCCTGGTCTA  193

seq1  CAAAGTGAGTTCCAAGACAGCTAGGGCTATACAGAGAAACCCTGTCTCGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAGTTCCAAGACAGCTAGGGCTATACAGAGAAACCCTGTCTCGA  243

seq1  AAATCAAATCAAAACAAAACAAAACAAAAAGAATACATAAAGATACACAA  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATCAAATCAAAACAAAACAAAAC-AAAAGAATACATAAAGATACACAA  292

seq1  AGCCTTTTAAAACACAATAAAGTGAAATAGTAATAAAAGCATTT-AAAGG  347
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCCTTTTAAAACACAATAAAGTGAAATAGTAATAAAAGCATTTAAAAGG  342

seq1  GGGATTTGGTGCCCAGTTCCTCTCCTCCATGCTGGGATCTTGTCTGGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGGTGCCCAGTTCCTCTCCTCCATGCTGGGATCTTGTCTGGCTT  392

seq1  GTCCTTGAGCTGGTCTTGAGCATGATGTCACAATTGCTGGGAGTTCATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAGCTGGTCTTGAGCATGATGTCACAATTGCTGGGAGTTCATGT  442

seq1  GTGTCCAGAAAACATTGTTTCCTTGAAGTCACTCACCACCTCTGGCTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGAAAACATTGTTTCCTTGAAGTCACTCACCACCTCTGGCTCCT  492

seq1  AGAATCTTTTCTTCTTCGGCAAAGATCCCCGAGCTATGAGGGAAGAAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTTTCTTCTTCGGCAAAGATCCCCGAGCTATGAGGGAAGAAATG  542

seq1  AAGGATCGACATCCCATTGAGGGCTTAGTATTCTCTCTCATTGGCTAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCGACATCCCATTGAGGGCTTAGTATTCTCTCTCATTGGCTAGTT  592

seq1  GTGAGTCTCTGTGTCAGTTGGAGTCTACTGCAAGAAGTTTCTCTGATGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTCTGTGTCAGTTGGAGTCTACTGCAAGAAGTTTCTCTGATGAG  642

seq1  GGTTGAAGGATGAGGGTCGATGGATACACTCATCTATGGGTATGGCAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGGATGAGGGTCGATGGATACACTCATCTATGGGTATGGCAATA  692

seq1  CATCATTAGCAGAATAATACTATTGGTTCTCCACTAGGGCCCAGAGGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAGCAGAATAATACTATTGGTTCTCCACTAGGGCCCAGAGGAGA  742

seq1  TGTTGACGTTTAATTACTGCTGGCAAATAAAAGGTCAGTTTTCTTCAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACGTTTAATTACTGCTGGCAAATAAAAGGTCAGTTTTCTTCAATG  792

seq1  GAGTGACTTTGGTACACTGAGCACACTCCAGGGCAGACACTATACCAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTTTGGTACACTGAGCACACTCCAGGGCAGACACTATACCAGTA  842

seq1  GCAGTTAACTGTGTCAGGGAGTGACAAAAATTTGTGTTGGTAGGGGAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAACTGTGTCAGGGAGTGACAAAAATTTGTGTTGGTAGGGGAGGA  892

seq1  GCAGGAGAATCTGGGAGGACTTGGGAGAGGGGAATGAACATGATCAGAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAATCTGGGAGGACTTGGGAGAGGGGAATGAACATGATCAGAGT  942

seq1  GCATCCTGTCACAGCCTTACAGAATTAAAGAAAGCATTTAAAAATAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGTCACAGCCTTACAGAATTAAAGAAAGCATTTAAAAATAGAAA  992

seq1  AAGAAAAAAGAAAAACACACAGGAGGGGGAAAAAAGGTGAAGGATTAGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAGAAAAACACACAGGAGGGGGAAAAAAGGTGAAGGATTAGAG  1042

seq1  TGAATTC  1054
      |||||||
seq2  TGAATTC  1049

seq1: chr19_38636342_38637042
seq2: B6Ng01-039A10.g_61_761

seq1  GAATTCAAAGCCAGTCTTGCATATATATACAGTTTGAGGCCAGCCTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGTCTTGCATATATATACAGTTTGAGGCCAGCCTGGGC  50

seq1  TACATGACCTTCCCTTCAGAAAAAGGAAGGAAGGAAGTCAGGAAGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACCTTCCCTTCAGAAAAAGGAAGGAAGGAAGTCAGGAAGGGAGG  100

seq1  AGGAGTTGCTCTTATTTTTAAACACTAGGTGTGAGGTGCTTATTTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGCTCTTATTTTTAAACACTAGGTGTGAGGTGCTTATTTTGTTA  150

seq1  GTGGAGGGTTTCTGTCTTTGCTCCATCAAATGCTTGCTAATAATTATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGGTTTCTGTCTTTGCTCCATCAAATGCTTGCTAATAATTATTGC  200

seq1  TAATAATACCAGCCAGGTGGTGGCAGCACACGCCTGTAATCCTAGCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATACCAGCCAGGTGGTGGCAGCACACGCCTGTAATCCTAGCACTC  250

seq1  AGGAGGCAGAGGCAGGTAGATCTCTGAGTTCAAGGCCAGCCTGGCCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGAGGCAGGTAGATCTCTGAGTTCAAGGCCAGCCTGGCCTGTT  300

seq1  GAGTGAGTTCCAGGACAGCCAGGTCTATACAGAGAAACCCTGTCCAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCAGGTCTATACAGAGAAACCCTGTCCAAAAA  350

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAACAAAAAACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAACAAAAAACAAAAC  400

seq1  AAAACAAAACAACAACAACAAAATAAATAAATAAACAAAGAAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAACAACAACAAAATAAATAAATAAACAAAGAAAGAAAGAA  450

seq1  ACTAAGAAACAAAGAAAGAATGAAGAATACCAGTGAAGCAAGGTTCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAAACAAAGAAAGAATGAAGAATACCAGTGAAGCAAGGTTCTGAC  500

seq1  TATGCTCTCTGATAAGCCAGAGTCCAAAAGACTAGGACAGGAGGACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTCTGATAAGCCAGAGTCCAAAAGACTAGGACAGGAGGACCACA  550

seq1  GAGTTGGACCACCCTGGGCTGCTTGTTGAGACCCCCATTCCAACAAAGAA  600
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGTTGGACCACCCTGGGCTGTTTGTTGAGACCCCCATTCCAACAAAGAA  600

seq1  GTGCATCGAAGCTGGCATTTTTCTCTTTTACCCCCTTTCAGACCCGGCTC  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGCATCGAAGCTGGCATTTTTCTCTTTTACCCCCTTTCAAACCCGGCTC  650

seq1  TATTGCCCAGCTACTAGGTTGCTAGTGGTGGTTGTTAGTGGTGCTTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCCAGCTACTAGGTTGCTAGTGGTGGTTGTTAGTGGTGCTTCCTA  700

seq1  G  701
      |
seq2  G  701